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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:191372..193533 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G00520.1 vs.
Match: EWM28506.1 (hypothetical protein Naga_100058g9 [Nannochloropsis gaditana]) HSP 1 Score: 379.0 bits (972), Expect = 2.700e-101 Identity = 239/467 (51.18%), Postives = 305/467 (65.31%), Query Frame = 0
Query: 141 MAMEGDS---SPFQFSLFAFGRGDGGTVKTSPASGTKKNRQQQPPQKK--EEDKGWFVFSFPFSSISPAEQQEISKKGKKRKKRKAEDEKKGWFSLLSLPWSGGFASFNSEWKDQLALAKKIKKLEKEVADDYIRGSRAKAAQYRYEALRTLEEVQG---GREGGQGALEFDPIIAGKTMKSQRLEVKDAKLLLHQQQQQQQQELQQPGQREESMP-----LKPEDLDRMLQQLESVVKDEQQWARLASACVGALLGLLLIPSHNFFGVTFLALFVTFLTTTPGLVGDAARMSGYGLLSLANALGQFEKKFAVLRRVREAMWDMAEASIPF-KLEFKDENSLKHWRNAYKGEGFLHPDIRPAPPMRDAQYVEYLREVKKWVEVEEREVLRALRKKEDERASGLREREERRERMQKVLVGLWEGSATAATMVGG-MVMSKREGGMGEVEKEFKGEGGMDDDVAFLKRF 593
M EGD+ S F F +FAFG+ P G+K +Q +K +EDKG F F A++ G+ + +R +D + GWFS L PWSG FA+FN+EWK+Q+ LAK+IKKLEKEVA D RG RAK AQYRY+AL+TLEEV+ GR G+G FDP +AGK+ KS +LEV+DA LL +Q + + G ++ P ++PED D +L QLE+ K EQ+WARLASA +GA LG+ L+PSH+ + FLTTTPG+VGDA RM+GY +S+ A E+K AVL ++R +W +EAS PF + EF L WRNAY GEGFLHP IRPAPPMRDAQYVEYL+EVK+WVEVEE+EVL+ALR+KEDER + EREERRERMQ+V+ GLW+G A AAT + +V S EGG +E GEGGM+DD+AFLKRF
Sbjct: 116 MKGEGDAKRVSDFPFRIFAFGKKKKTAAVKEPPPGSKNINKQSKRRKPSAKEDKGGRGF-FSIIDTGRADRNSPKPAGRGKGRRGKKDGQTGWFSSLLYPWSG-FAAFNTEWKEQMVLAKRIKKLEKEVARDSTRGQRAKVAQYRYDALKTLEEVEAARAGRSSGEGG-SFDPALAGKSRKSLQLEVEDAMLL--RQSPSAKPSGSKAGAKKGLGPGGEVLVRPEDADGLLHQLEASAKSEQRWARLASAGIGASLGVALLPSHDVWAGMVGGGLAAFLTTTPGIVGDATRMAGYSAVSVGKAASALEQKCAVLDKLRGTLWKKSEASGPFLRFEFP---FLASWRNAYGGEGFLHPGIRPAPPMRDAQYVEYLQEVKRWVEVEEQEVLQALRRKEDERVRDVMEREERRERMQQVVGGLWQGGAAAATKLKTLLVSSATEGGKEGRWEEPGGEGGMEDDLAFLKRF 574
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G00520.1 ID=NO04G00520.1|Name=NO04G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2070bp
GGGCGGCTGGGGCAGGTGGACTCGTCGCTGATGACCAATGATGGCGTCAG
GCTGACAGGATAAATGCACGTGCCTCTTTGTGTGCATGCCTCACGCTGGC
CACCAAAGGGCTTTCCGGTGGCACTCTTATGGCCTTCTCATGCTCGGAAG
TGCCATTCTCACTGATCTGTTTCTTTCCTTTCCCTATTAGTACCATTACA
GCACAAAGCACCGAAGCTTCTCTGAGTGCTACCAGGATGGACTCGAGACT
ACCAAGAAGACCAAGATGCCCGAAACTGTGGCCTTGGGAAGGTGCTTCTT
CTCATTCATCTAAAAGAATAGCCGCTATCGCTTGTCTCGCCTTCCATGTC
GTGACTGCGGCTTGCAACTCCATAGCCTCCATTCGTCCCTTTCTCCTCCC
CACCCGAAAAGTGGGATTCTGTCCTGCCCCCTCTTCTTCCCTCCCGTGCA
TCTCGCCAAGCCACCGCCTGCTATGGTGTCAGACCTCCTCCTCCTTCCCC
TCCACCGGCAGCAGAAGCGTCTCCAACAACATCAACAACGCAGTGAGGAT
GGCAATGGAGGGAGATTCGTCACCGTTTCAATTTAGCCTCTTTGCATTTG
GAAGGGGCGACGGAGGGACAGTCAAAACGTCACCCGCCAGCGGCACAAAA
AAGAATAGGCAGCAGCAGCCACCCCAGAAAAAAGAGGAAGACAAGGGATG
GTTCGTCTTTTCTTTCCCTTTCTCCAGCATAAGTCCAGCGGAACAGCAAG
AGATTTCTAAGAAGGGGAAGAAGAGGAAGAAGAGGAAAGCGGAGGATGAG
AAGAAAGGTTGGTTCTCCCTTCTTTCTCTCCCTTGGAGTGGTGGCTTCGC
CTCGTTCAATAGCGAATGGAAAGACCAACTCGCCCTCGCGAAGAAAATCA
AGAAGCTGGAGAAGGAGGTCGCTGACGACTACATACGGGGATCGAGAGCC
AAGGCTGCCCAGTACAGGTATGAGGCTTTGCGGACGCTGGAAGAGGTGCA
GGGCGGTAGGGAGGGAGGGCAGGGCGCGTTGGAGTTCGACCCTATCATAG
CGGGGAAGACCATGAAGAGCCAACGGTTGGAAGTGAAGGATGCGAAGCTC
CTCCTCCACCAGCAGCAACAACAGCAGCAGCAGGAGCTTCAACAGCCAGG
GCAAAGAGAGGAAAGCATGCCCCTGAAGCCCGAGGATCTAGACAGGATGC
TACAGCAACTGGAGAGCGTGGTGAAAGACGAACAACAATGGGCCAGGCTC
GCTTCTGCCTGTGTCGGGGCCCTCCTCGGACTGCTCCTCATCCCTTCCCA
TAATTTTTTTGGTGTGACGTTTCTGGCACTCTTCGTGACTTTCCTCACCA
CGACGCCGGGGCTGGTAGGGGACGCGGCGAGGATGAGTGGGTATGGCCTC
CTGTCGCTCGCCAATGCCCTTGGTCAATTCGAGAAGAAATTTGCCGTGTT
ACGAAGGGTACGTGAGGCCATGTGGGACATGGCCGAGGCCTCGATCCCGT
TTAAACTTGAATTTAAAGATGAAAATTCGTTGAAACACTGGCGGAATGCT
TACAAAGGAGAGGGTTTTCTCCATCCAGACATAAGGCCGGCGCCGCCGAT
GAGGGACGCTCAGTATGTGGAGTACCTCAGGGAGGTGAAGAAGTGGGTGG
AGGTGGAAGAGAGAGAGGTGCTGAGGGCCCTCAGGAAGAAGGAGGATGAG
CGGGCGAGTGGGTTGAGGGAGAGGGAGGAGAGGAGGGAGAGGATGCAGAA
GGTGTTGGTTGGCTTGTGGGAGGGGAGTGCGACGGCGGCGACGATGGTGG
GGGGGATGGTGATGAGTAAGAGGGAGGGAGGGATGGGAGAGGTAGAGAAG
GAGTTTAAAGGGGAAGGAGGGATGGACGACGACGTAGCGTTTTTGAAGAG
ATTTGTGGAGAGGGAACGGGGGTAGAAAGGATGACGACGAAGGAGGAAGG
AGGGAGGGGGGGGTTCTGTGACATACATTTATATAGCCGTTAGTAAATTT
TCGTTGTGCAGAGAGACGGTGAAAGGCAGTCTAGAAGAGAGACAAACCAA
AGAGGAAGAGAAGAGAAGGG back to topprotein sequence of NO04G00520.1 >NO04G00520.1-protein ID=NO04G00520.1-protein|Name=NO04G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=599bp
MAFSCSEVPFSLICFFPFPISTITAQSTEASLSATRMDSRLPRRPRCPKL
WPWEGASSHSSKRIAAIACLAFHVVTAACNSIASIRPFLLPTRKVGFCPA
PSSSLPCISPSHRLLWCQTSSSFPSTGSRSVSNNINNAVRMAMEGDSSPF
QFSLFAFGRGDGGTVKTSPASGTKKNRQQQPPQKKEEDKGWFVFSFPFSS
ISPAEQQEISKKGKKRKKRKAEDEKKGWFSLLSLPWSGGFASFNSEWKDQ
LALAKKIKKLEKEVADDYIRGSRAKAAQYRYEALRTLEEVQGGREGGQGA
LEFDPIIAGKTMKSQRLEVKDAKLLLHQQQQQQQQELQQPGQREESMPLK
PEDLDRMLQQLESVVKDEQQWARLASACVGALLGLLLIPSHNFFGVTFLA
LFVTFLTTTPGLVGDAARMSGYGLLSLANALGQFEKKFAVLRRVREAMWD
MAEASIPFKLEFKDENSLKHWRNAYKGEGFLHPDIRPAPPMRDAQYVEYL
REVKKWVEVEEREVLRALRKKEDERASGLREREERRERMQKVLVGLWEGS
ATAATMVGGMVMSKREGGMGEVEKEFKGEGGMDDDVAFLKRFVERERG* back to topmRNA from alignment at chr4:191372..193533- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G00520.1 ID=NO04G00520.1|Name=NO04G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2162bp|location=Sequence derived from alignment at chr4:191372..193533- (Nannochloropsis oceanica)
GGGCGGCTGGGGCAGGTGGACTCGTCGCTGATGACCAATGATGGCGTCAG
GCTGACAGGATAAATGCACGTGCCTCTTTGTGTGCATGCCTCACGCTGGC
CACCAAAGGGCTTTCCGGTGGCACTCTTATGGCCTTCTCATGCTCGGAAG
TGCCATTCTCACTGATCTGTTTCTTTCCTTTCCCTATTAGTACCATTACA
GCACAAAGCACCGAAGCTTCTCTGAGTGCTACCAGGATGGACTCGAGACT
ACCAAGAAGACCAAGATGCCCGAAACTGTGGCCTTGGGAAGGTGCTTCTT
CTCATTCATCTAAAAGAATAGCCGCTATCGCTTGTCTCGCCTTCCATGTC
GTGACTGCGGCTTGCAACTCCATAGCCTCCATTCGTCCCTTTCTCCTCCC
CACCCGAAAAGGTAAGTCTTTCTACTTTCCTTTCCCTATGCACTTCCGCG
CAACCTTTTCGCTCATGTTCATGCATATAATCTCTTCTAAACTCGAAAAC
TAGTGGGATTCTGTCCTGCCCCCTCTTCTTCCCTCCCGTGCATCTCGCCA
AGCCACCGCCTGCTATGGTGTCAGACCTCCTCCTCCTTCCCCTCCACCGG
CAGCAGAAGCGTCTCCAACAACATCAACAACGCAGTGAGGATGGCAATGG
AGGGAGATTCGTCACCGTTTCAATTTAGCCTCTTTGCATTTGGAAGGGGC
GACGGAGGGACAGTCAAAACGTCACCCGCCAGCGGCACAAAAAAGAATAG
GCAGCAGCAGCCACCCCAGAAAAAAGAGGAAGACAAGGGATGGTTCGTCT
TTTCTTTCCCTTTCTCCAGCATAAGTCCAGCGGAACAGCAAGAGATTTCT
AAGAAGGGGAAGAAGAGGAAGAAGAGGAAAGCGGAGGATGAGAAGAAAGG
TTGGTTCTCCCTTCTTTCTCTCCCTTGGAGTGGTGGCTTCGCCTCGTTCA
ATAGCGAATGGAAAGACCAACTCGCCCTCGCGAAGAAAATCAAGAAGCTG
GAGAAGGAGGTCGCTGACGACTACATACGGGGATCGAGAGCCAAGGCTGC
CCAGTACAGGTATGAGGCTTTGCGGACGCTGGAAGAGGTGCAGGGCGGTA
GGGAGGGAGGGCAGGGCGCGTTGGAGTTCGACCCTATCATAGCGGGGAAG
ACCATGAAGAGCCAACGGTTGGAAGTGAAGGATGCGAAGCTCCTCCTCCA
CCAGCAGCAACAACAGCAGCAGCAGGAGCTTCAACAGCCAGGGCAAAGAG
AGGAAAGCATGCCCCTGAAGCCCGAGGATCTAGACAGGATGCTACAGCAA
CTGGAGAGCGTGGTGAAAGACGAACAACAATGGGCCAGGCTCGCTTCTGC
CTGTGTCGGGGCCCTCCTCGGACTGCTCCTCATCCCTTCCCATAATTTTT
TTGGTGTGACGTTTCTGGCACTCTTCGTGACTTTCCTCACCACGACGCCG
GGGCTGGTAGGGGACGCGGCGAGGATGAGTGGGTATGGCCTCCTGTCGCT
CGCCAATGCCCTTGGTCAATTCGAGAAGAAATTTGCCGTGTTACGAAGGG
TACGTGAGGCCATGTGGGACATGGCCGAGGCCTCGATCCCGTTTAAACTT
GAATTTAAAGATGAAAATTCGTTGAAACACTGGCGGAATGCTTACAAAGG
AGAGGGTTTTCTCCATCCAGACATAAGGCCGGCGCCGCCGATGAGGGACG
CTCAGTATGTGGAGTACCTCAGGGAGGTGAAGAAGTGGGTGGAGGTGGAA
GAGAGAGAGGTGCTGAGGGCCCTCAGGAAGAAGGAGGATGAGCGGGCGAG
TGGGTTGAGGGAGAGGGAGGAGAGGAGGGAGAGGATGCAGAAGGTGTTGG
TTGGCTTGTGGGAGGGGAGTGCGACGGCGGCGACGATGGTGGGGGGGATG
GTGATGAGTAAGAGGGAGGGAGGGATGGGAGAGGTAGAGAAGGAGTTTAA
AGGGGAAGGAGGGATGGACGACGACGTAGCGTTTTTGAAGAGATTTGTGG
AGAGGGAACGGGGGTAGAAAGGATGACGACGAAGGAGGAAGGAGGGAGGG
GGGGGTTCTGTGACATACATTTATATAGCCGTTAGTAAATTTTCGTTGTG
CAGAGAGACGGTGAAAGGCAGTCTAGAAGAGAGACAAACCAAAGAGGAAG
AGAAGAGAAGGG back to topCoding sequence (CDS) from alignment at chr4:191372..193533- >NO04G00520.1 ID=NO04G00520.1|Name=NO04G00520.1|organism=Nannochloropsis oceanica|type=CDS|length=1797bp|location=Sequence derived from alignment at chr4:191372..193533- (Nannochloropsis oceanica)
ATGGCCTTCTCATGCTCGGAAGTGCCATTCTCACTGATCTGTTTCTTTCC
TTTCCCTATTAGTACCATTACAGCACAAAGCACCGAAGCTTCTCTGAGTG
CTACCAGGATGGACTCGAGACTACCAAGAAGACCAAGATGCCCGAAACTG
TGGCCTTGGGAAGGTGCTTCTTCTCATTCATCTAAAAGAATAGCCGCTAT
CGCTTGTCTCGCCTTCCATGTCGTGACTGCGGCTTGCAACTCCATAGCCT
CCATTCGTCCCTTTCTCCTCCCCACCCGAAAAGTGGGATTCTGTCCTGCC
CCCTCTTCTTCCCTCCCGTGCATCTCGCCAAGCCACCGCCTGCTATGGTG
TCAGACCTCCTCCTCCTTCCCCTCCACCGGCAGCAGAAGCGTCTCCAACA
ACATCAACAACGCAGTGAGGATGGCAATGGAGGGAGATTCGTCACCGTTT
CAATTTAGCCTCTTTGCATTTGGAAGGGGCGACGGAGGGACAGTCAAAAC
GTCACCCGCCAGCGGCACAAAAAAGAATAGGCAGCAGCAGCCACCCCAGA
AAAAAGAGGAAGACAAGGGATGGTTCGTCTTTTCTTTCCCTTTCTCCAGC
ATAAGTCCAGCGGAACAGCAAGAGATTTCTAAGAAGGGGAAGAAGAGGAA
GAAGAGGAAAGCGGAGGATGAGAAGAAAGGTTGGTTCTCCCTTCTTTCTC
TCCCTTGGAGTGGTGGCTTCGCCTCGTTCAATAGCGAATGGAAAGACCAA
CTCGCCCTCGCGAAGAAAATCAAGAAGCTGGAGAAGGAGGTCGCTGACGA
CTACATACGGGGATCGAGAGCCAAGGCTGCCCAGTACAGGTATGAGGCTT
TGCGGACGCTGGAAGAGGTGCAGGGCGGTAGGGAGGGAGGGCAGGGCGCG
TTGGAGTTCGACCCTATCATAGCGGGGAAGACCATGAAGAGCCAACGGTT
GGAAGTGAAGGATGCGAAGCTCCTCCTCCACCAGCAGCAACAACAGCAGC
AGCAGGAGCTTCAACAGCCAGGGCAAAGAGAGGAAAGCATGCCCCTGAAG
CCCGAGGATCTAGACAGGATGCTACAGCAACTGGAGAGCGTGGTGAAAGA
CGAACAACAATGGGCCAGGCTCGCTTCTGCCTGTGTCGGGGCCCTCCTCG
GACTGCTCCTCATCCCTTCCCATAATTTTTTTGGTGTGACGTTTCTGGCA
CTCTTCGTGACTTTCCTCACCACGACGCCGGGGCTGGTAGGGGACGCGGC
GAGGATGAGTGGGTATGGCCTCCTGTCGCTCGCCAATGCCCTTGGTCAAT
TCGAGAAGAAATTTGCCGTGTTACGAAGGGTACGTGAGGCCATGTGGGAC
ATGGCCGAGGCCTCGATCCCGTTTAAACTTGAATTTAAAGATGAAAATTC
GTTGAAACACTGGCGGAATGCTTACAAAGGAGAGGGTTTTCTCCATCCAG
ACATAAGGCCGGCGCCGCCGATGAGGGACGCTCAGTATGTGGAGTACCTC
AGGGAGGTGAAGAAGTGGGTGGAGGTGGAAGAGAGAGAGGTGCTGAGGGC
CCTCAGGAAGAAGGAGGATGAGCGGGCGAGTGGGTTGAGGGAGAGGGAGG
AGAGGAGGGAGAGGATGCAGAAGGTGTTGGTTGGCTTGTGGGAGGGGAGT
GCGACGGCGGCGACGATGGTGGGGGGGATGGTGATGAGTAAGAGGGAGGG
AGGGATGGGAGAGGTAGAGAAGGAGTTTAAAGGGGAAGGAGGGATGGACG
ACGACGTAGCGTTTTTGAAGAGATTTGTGGAGAGGGAACGGGGGTAG back to top
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