NO04G00250.1, NO04G00250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00250.1
Unique NameNO04G00250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4826
Alignment locationchr4:110568..116516 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:110568..116516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G00250.1 vs.
Match: EWM28428.1 (methionine synthase mitochondrial precursor-like protein [Nannochloropsis gaditana])

HSP 1 Score: 398.7 bits (1023), Expect = 8.700e-107
Identity = 304/721 (42.16%), Postives = 380/721 (52.70%), Query Frame = 0
Query:    2 SDDPASQPSVLVGFGSATGNSEFIAKRIHAELQEKHGLKRVQLFALNDWKKLSDPTFEEYQAGIFVCATTGNGDAPENAEKFWRFLKRRTQPKTLLSKGMHFAVLGLGDTNYDKFCHMGKSMDARLGEVGGCRVCKVGMADEAMGLEGTVEPWIDALYPALLKVLGLDGQAGAGAVEASPPTTTTATSATTASVGNAAAPAAGVETPAVVAATSVAAAAAPTVNGKEVDKEEAAAAAAAAAAKEDAATAAVTTAVEAKLTLKEQKAMHQNPTEMSGPQMQTRGGALTKESGARWLADMVLSEEFSRIQKEAKEMLKATPLVPYAPSVKIVVSKEEEETAAAAPT-----PAATKGT----SIAGRNPLALAAPIPVA-ASPSPASVPSTPPTQPPMTMSNGTPHSLQVK---TTFPPSSVPSSSSPAGAGTSIS---PGPISGRLSPF-SGVANGGWHSPSISSPT---------TTSAGVPAAGVAVAAGGTSPYCYEHPARAPTDRRPWTSSWRGWVGGGEGGGMVKVVAGMALGGLLGAEEWKVEEVVREMMDLEGSPKPHVLRVLASFTQDEEDRAVLFWMGGGGGGSGGGKAMYEKWVVRQRLTIGEVLEMVPSCRPTLAALLDVLSPIPARYYSVASSPLVCPSKLTVAFSVVKYTLAVAGEGEREGGVVRRKGLCTTWLEEMLREAGATGETSGDKIQDLRLSSALPSVSIFLK 697
            +D  AS PS+LV FGSATGNSEFIAKRIHAELQ KHGL   +L A+NDWKKLS+PTFEEY+AGIFVCATTGNGDAPENAEKFWRFLKRRTQPKTLL+  MHFAVLGLGDTNYDKFCHMGKSMD RL EVGG R+  +G ADEA+GLEGTVEPWI+ LYPAL+K LG D        EA       A     ASVGN  A     +   +               G E  +E  A      A     A      AVE K+   E+K    +  +  G   Q RGG LT+ SGA+W+  ++   +F +I++ A    K  P   Y PSVK+V   E    A   P      P   +G+    S + ++ L  + P     A P+P++ PS    +PP            V       P  S P ++ P   G S S   P     R + + +  A  G HS     PT         T     P   V   A G    C   P R     R      R     G     ++V  G+A+GG+LG   W +EEVVRE+MDLEG+PKPHVL+ LA++TQDE D+A+L+W+G GG    GGKA+YE W++ QRL++ EVLE++PS  PTLAALLD+L P+P RY      PL      T      +     +  G  +G V    G    W     R  G    T+   I+      +LP   ++LK
Sbjct:    4 TDGDASHPSILVCFGSATGNSEFIAKRIHAELQNKHGLPGARLLAMNDWKKLSNPTFEEYEAGIFVCATTGNGDAPENAEKFWRFLKRRTQPKTLLANRMHFAVLGLGDTNYDKFCHMGKSMDTRLSEVGGRRMHNLGTADEAVGLEGTVEPWIETLYPALMKALGRD--------EAG------AKDTALASVGNGEASNKANDDSTLGV-------------GPETGREGMAGQGEEGAP----AMEVERVAVEGKV---EEKDAEPHVADRVGLP-QARGGPLTQASGAQWVESLLAPADFQQIRETALAAAKDRPWTAYTPSVKVVFMDESGPGAGCTPPVAEAHPIPRRGSPPRSSTSSQSSLPCSTPFSHGGAFPTPSAAPSPTALKPPSPFKGRLSPFTGVTGGGRAAPTGSAPVAT-PQAQGASYSYEHPAQAKVRHAVYLTKTAGDGHHS---EPPTRRVLELELDTQDCDPPFPYVPGDAVGIR--C---PNRTEAVERVLERVGREGGRAGNRKSRLQVTDGVAVGGVLGTACWTLEEVVREVMDLEGTPKPHVLKALAAYTQDEGDQALLWWLGAGG---EGGKALYESWILEQRLSLAEVLELIPSAAPTLAALLDLLPPLPPRYLLCGVLPLGLSHPATYRLQRGRVRAPTSRGGGSDGRVSAPPG----WKACCERRPGPPVGTTSASIRRPLPPPSLPPSPLYLK 673          
The following BLAST results are available for this feature:
BLAST of NO04G00250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28428.18.700e-10742.16methionine synthase mitochondrial precursor-like p... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00250NO04G00250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00250.1NO04G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00250.1.cds1NO04G00250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00250.1.cds2NO04G00250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00250.1.cds3NO04G00250.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00250.1.cds4NO04G00250.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00250.1.cds5NO04G00250.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00250.1.cds6NO04G00250.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00250.1.cds7NO04G00250.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00250.1.cds8NO04G00250.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00250.1 ID=NO04G00250.1|Name=NO04G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=4826bp
ATGAGCGACGACCCCGCAAGTCAACCGTCGGTGTTGGTTGGCTTTGGCAG
TGCCACGGGCAACTCCGAATTCATCGCTAAGCGGATCCATGCCGAACTAC
AAGAAAAGCACGGCCTGAAAAGAGTGCAGCTCTTTGCCTTGAACGATTGG
AAGAAGTTGTCCGACCCGACCTTTGAGGAGTACCAAGCAGGAATCTTTGT
CTGCGCCACCACAGGGAATGGCGACGCACCGGAGAACGCAGAGAAGTTCT
GGCGGTTTTTGAAACGCCGCACGCAGCCCAAGACCTTGTTGAGTAAGGGC
ATGCACTTCGCCGTCCTGGGGCTGGGCGACACCAACTATGACAAGTTTTG
TCACATGGGCAAGAGCATGGACGCGCGCTTGGGGGAGGTGGGGGGATGCC
GAGTGTGCAAGGTGGGGATGGCTGACGAGGCCATGGGGTTGGAAGGGACT
GTGGAACCTTGGATTGACGCCTTGTACCCGGCCTTGCTCAAGGTGTTGGG
TCTCGATGGGCAAGCAGGAGCAGGAGCAGTGGAGGCCTCACCACCGACGA
CGACGACTGCGACGAGTGCGACGACGGCGAGTGTTGGGAATGCTGCTGCT
CCTGCTGCTGGTGTCGAGACCCCTGCAGTGGTAGCTGCGACATCTGTCGC
GGCGGCCGCTGCCCCGACGGTCAATGGCAAAGAGGTTGATAAGGAGGAGG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAGGAGGACGCGGCTACAGCA
GCAGTAACAACGGCAGTGGAAGCCAAGCTAACCCTGAAGGAACAGAAAGC
CATGCATCAAAACCCCACAGAAATGTCAGGGCCGCAAATGCAAACGCGGG
GGGGGGCGCTGACCAAGGAAAGTGGAGCCAGATGGTTGGCTGATATGGTG
CTTTCTGAGGAGTTCTCTCGGATACAAAAAGAGGCGAAGGAGATGTTGAA
GGCCACGCCCTTGGTACCCTACGCACCCTCGGTCAAGATCGTCGTCTCAA
AGGAGGAGGAGGAAACAGCAGCTGCGGCACCTACTCCTGCTGCTACCAAA
GGTACCAGTATAGCAGGGCGTAACCCCCTCGCCCTTGCTGCACCTATTCC
AGTTGCCGCATCCCCCTCTCCGGCATCGGTGCCCTCCACCCCACCCACTC
AACCCCCAATGACCATGAGCAACGGCACGCCTCATTCCCTGCAAGTGAAG
ACGACCTTCCCCCCGTCCTCTGTTCCCTCCTCTTCCTCCCCTGCCGGCGC
CGGCACCAGCATCAGCCCCGGCCCAATCTCCGGCCGTCTTTCTCCTTTCA
GCGGAGTCGCCAACGGCGGCTGGCACAGTCCCTCCATCTCCTCCCCCACC
ACCACCTCCGCCGGGGTTCCTGCTGCTGGTGTTGCGGTGGCTGCTGGTGG
CACCTCCCCTTACTGCTACGAACATCCGGCCCGTGCCCCAACCGACCGGC
GGCCGTGGACGTCGTCATGGCGAGGGTGGGTTGGAGGGGGGGAGGGGGGG
GGCATGGTGAAGGTGGTGGCGGGGATGGCGCTGGGTGGGCTGTTGGGGGC
AGAGGAATGGAAGGTGGAGGAGGTGGTGAGGGAGATGATGGATTTGGAGG
GCTCGCCCAAGCCGCATGTCCTGCGGGTGCTGGCCTCCTTCACGCAGGAC
GAGGAGGACAGAGCGGTGTTGTTTTGGATGGGTGGAGGAGGGGGAGGGAG
TGGAGGAGGGAAGGCCATGTATGAGAAGTGGGTGGTCAGGCAGCGGTTGA
CGATAGGGGAGGTGTTGGAGATGGTGCCGAGCTGCAGACCCACCTTAGCA
GCATTGCTGGATGTGTTGTCGCCCATCCCCGCCCGGTATTATTCTGTGGC
GTCTTCGCCGTTGGTGTGTCCCTCCAAGCTGACGGTGGCGTTCAGTGTGG
TGAAGTATACGCTGGCCGTGGCCGGGGAGGGAGAGAGGGAGGGAGGGGTG
GTTAGGAGGAAGGGACTGTGCACGACCTGGTTGGAGGAAATGCTGCGGGA
GGCTGGTGCCACGGGTGAGACATCGGGCGACAAAATCCAGGACCTCCGTC
TGTCTTCTGCTTTGCCCTCCGTCTCTATCTTCCTCAAGCCTGCGAAGGAA
TTTGTTTTGCCGGGGAGCGCCAAGTGGCCCTTGGTGCTCGTCGGGCCTGG
CACGGGTGTTGCTCCATTTATGGGCTTTTTGTCGCACCGACGGGCACGCC
GGGCGGCTATTGAGAGCGCGAAAGCGGAGGATTGGATATACCGGGAGGAA
ATGGAGGACTTTTTGAGGCAGGGGGTGTTGACGGAGATGCACACGGCGTT
CTCGAGGGAGGCGGGGAAGAAGGTGTATGTGCAGGATCGTATGCGCGAGC
AGGGGGCGAGGCTGGCACGGTTATTGTTGAAGGAGGGGGCGTATTTATAT
GTGTGTGGTGATGCAGAGAATATGGCTAGGGATGTGCATTCTAACTTGAA
GGCGTTGCTGGTGCAACATGGACAGGGACAACCAGGGAAGCCGGGGCAGG
AGCAAGGAGGGGTGCGGACGGAGGAGGAGGCGGAGGCGTTTTTGAGTGAA
CTTAAGCAGCGACAGCGTTTGGATGCCGGGTGTGTGCTGGATGCGCGATG
GAATCTTTACGGCACGGACGTGGTCCTCCGTCCAGGGCCTCGGATGAGCC
AGTACTACCGGAGGCTGCACGGTGGTAGGGGAAAAAAACAAATTTATTCT
CCCCCTTTGTCGCCGGGCGGAGCGCAAGACGGGCCCACAGATGGTTATGC
ATGGCCACCACAATCAGCGGCAGAAGGAAACCCCATTCCCCCATGCGCCA
ATTTCAATGGCCAGCGATATCCTCGCCAACAACAGAAACAGCACGATGAT
CAGCAGCAGCGAGTAATTCCTTCCCTTTCCTCCTCCTCCTCCACGTCCCA
CCCGCCTTCCGACATCCTCGCCCGTCTACAGATTTCCCCCCCACCTTTCT
CCACCTCAACCTGCTCCCCTATGCCTATGGATATCAAACTTAAAGATAAA
GGGGGAGTCAGAGGCCCACTCGCCCTTCTTTCTCCATCCTCCCCGCCACG
AGAACACCGAGGGAGGGAGGGCAAGGGGGAACGGAAGGATGGGGAGGAGA
AGGAGGAGGAGGAGGAGACATTAGTAGAAGAAGAAGAAGACGACAACGAA
GAGGCCGACAAGATGGATATCGACGAAGAAGAGGTGGAAGAGATGAGACT
TGAACAACAAGGCGGAGGAGGAGCGGGTAAAAGACAACATCAACAACGCC
ACGCGGCGTCTTTCTTTCTCCTACAGCAGCAGGGGGGGGGACACACACGG
AGCAATCACGTCAAATGGCGGTATTCCAAGCAGGGACTCCAGGAGCAGGA
GGGGGGGCAGGAGGGAGGGGGGGAGAGAGGGGCAGAGGGAGAAGAGGTAC
ATTATGGTCAAGGTGGCCCGGCAAACGCGGAGGGAGAGAAGGACAAGTGT
AAGCGGCAGAAAAGGGACAGCACCCGCTTTCCGCCCTCGTCCTCTTTCTC
CTCCTCTTTCTCTTCCTCCTCCTCCTCTTCCTCCTCCCCCTCTCCCTTTC
CCCACGAAATCAACCCCCCTCCTACGCGTCATCCCTTCTTGCCTCCCGTC
TATCCTCGCCAGCCCACCTACGCTCATATTCCGACGCCCAACACCCGCTT
TCCATGTTACATAGTAGGAGGGGGGATGGGAGGGAGGGAGGGAAGGGAGG
AAGACAGGGAGTGGCGTCAGCGGGAGGAAAAGAAGCAAAAGAGGGAGTGG
GCGCTGGCAGAAGCACAGGAAGGACGGCCTCCACCCACGCCCTACTTTTT
CCTCTCGGCCTATCAGCGCAGGCAGTTGCAGCAGCAGCAGCAGCAACAGC
AGCAGCAACAGCAGCAACAGCAGCAACAGCAACAGCTGCGCCCCCCCCTC
CCAGCGCGTCTTTCCTCTTCTCCATCGGGCTTTTCCTCGGTCTTATCCCA
TGATCCTCCTTCCTCGCACTTTCCACCACCTCTATGGGCTCTGGAACCAG
CCCAGCATCAGAAGCAGGAGCAGGAGCGGCAGCCGCAGCAGCGGCAACAC
AAGGAGGAGGAGGAGCAGGAGGAGCAGGAGGGGCAGGAGAGGTTTAAGGA
GGAGGGGGACGAAGAGGAAGAGGGGGATCAGGATGGAAAAAAAGGAGACG
AGGAGACGGATGTAGAGGAGGAGGAGGAAGGGGAGGAGGAGGAGGAAGGG
GAGGAGGGCGAGCTGAAGGGGCTGGAGGAGGAAGGCGAAAGGGAGGGAGC
GAGGGAGGGCGACGACTATCCTGTGTCGGATCTTCATCAGGTGCCAGTTC
GCATGGAGAGGAGGGGGGAAAGGAGGGAGGGAGCAAGGGAGGGATCGAAA
GAGGGAAGGAGCGTATGGAGGCCTCTGGGAGTACTGCTGTGCGTCACGGG
CATGATGCTCTTGGGGTGGGGTTTGGCCATCATCCCTCCTTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCATTTTCCATTCAGGACACT
ACAAGCCCTGTGGATGGGAAGTGTGTGCGTCCTTTTCCAGCCCGAGGGGG
GGAAGGAGGGAGGGGTGGCATGGTGGGGGCAGATAAGCAGATCCGGTCTG
TGTGCCACGAAGGAGGAGGGATTAGAGGAGTAGGAGGAGCTGGAGGAGGA
GGTGGGAGAGGAAACGAGGTTGGAGAGGAGGAGGGAGTAGAAGGAGGAGC
TGGAGATCGAAGGATACGTAAAGAAAGTGGGCGAAATAGTCGATTGCCTG
GCTACGGAAGCTTCGCGGAATGACGGGTGGAAGAGAGGCAGGCAGGGAGG
GAGGGAGGGAGGAAGGGAGGGAGGGA
back to top

protein sequence of NO04G00250.1

>NO04G00250.1-protein ID=NO04G00250.1-protein|Name=NO04G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1591bp
MSDDPASQPSVLVGFGSATGNSEFIAKRIHAELQEKHGLKRVQLFALNDW
KKLSDPTFEEYQAGIFVCATTGNGDAPENAEKFWRFLKRRTQPKTLLSKG
MHFAVLGLGDTNYDKFCHMGKSMDARLGEVGGCRVCKVGMADEAMGLEGT
VEPWIDALYPALLKVLGLDGQAGAGAVEASPPTTTTATSATTASVGNAAA
PAAGVETPAVVAATSVAAAAAPTVNGKEVDKEEAAAAAAAAAAKEDAATA
AVTTAVEAKLTLKEQKAMHQNPTEMSGPQMQTRGGALTKESGARWLADMV
LSEEFSRIQKEAKEMLKATPLVPYAPSVKIVVSKEEEETAAAAPTPAATK
GTSIAGRNPLALAAPIPVAASPSPASVPSTPPTQPPMTMSNGTPHSLQVK
TTFPPSSVPSSSSPAGAGTSISPGPISGRLSPFSGVANGGWHSPSISSPT
TTSAGVPAAGVAVAAGGTSPYCYEHPARAPTDRRPWTSSWRGWVGGGEGG
GMVKVVAGMALGGLLGAEEWKVEEVVREMMDLEGSPKPHVLRVLASFTQD
EEDRAVLFWMGGGGGGSGGGKAMYEKWVVRQRLTIGEVLEMVPSCRPTLA
ALLDVLSPIPARYYSVASSPLVCPSKLTVAFSVVKYTLAVAGEGEREGGV
VRRKGLCTTWLEEMLREAGATGETSGDKIQDLRLSSALPSVSIFLKPAKE
FVLPGSAKWPLVLVGPGTGVAPFMGFLSHRRARRAAIESAKAEDWIYREE
MEDFLRQGVLTEMHTAFSREAGKKVYVQDRMREQGARLARLLLKEGAYLY
VCGDAENMARDVHSNLKALLVQHGQGQPGKPGQEQGGVRTEEEAEAFLSE
LKQRQRLDAGCVLDARWNLYGTDVVLRPGPRMSQYYRRLHGGRGKKQIYS
PPLSPGGAQDGPTDGYAWPPQSAAEGNPIPPCANFNGQRYPRQQQKQHDD
QQQRVIPSLSSSSSTSHPPSDILARLQISPPPFSTSTCSPMPMDIKLKDK
GGVRGPLALLSPSSPPREHRGREGKGERKDGEEKEEEEETLVEEEEDDNE
EADKMDIDEEEVEEMRLEQQGGGGAGKRQHQQRHAASFFLLQQQGGGHTR
SNHVKWRYSKQGLQEQEGGQEGGGERGAEGEEVHYGQGGPANAEGEKDKC
KRQKRDSTRFPPSSSFSSSFSSSSSSSSSPSPFPHEINPPPTRHPFLPPV
YPRQPTYAHIPTPNTRFPCYIVGGGMGGREGREEDREWRQREEKKQKREW
ALAEAQEGRPPPTPYFFLSAYQRRQLQQQQQQQQQQQQQQQQQQQLRPPL
PARLSSSPSGFSSVLSHDPPSSHFPPPLWALEPAQHQKQEQERQPQQRQH
KEEEEQEEQEGQERFKEEGDEEEEGDQDGKKGDEETDVEEEEEGEEEEEG
EEGELKGLEEEGEREGAREGDDYPVSDLHQVPVRMERRGERREGAREGSK
EGRSVWRPLGVLLCVTGMMLLGWGLAIIPPSSSSSSSSSSSSSSFSIQDT
TSPVDGKCVRPFPARGGEGGRGGMVGADKQIRSVCHEGGGIRGVGGAGGG
GGRGNEVGEEEGVEGGAGDRRIRKESGRNSRLPGYGSFAE*
back to top

mRNA from alignment at chr4:110568..116516+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00250.1 ID=NO04G00250.1|Name=NO04G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=5949bp|location=Sequence derived from alignment at chr4:110568..116516+ (Nannochloropsis oceanica)
ATGAGCGACGACCCCGCAAGGTAGGCTTCCTTTCTTCCTTTCCTTATCCT TGTTATTCCTCATCATCGGGCTGCACATGCAGCTGCAACCACCTCACCCT TTCCACCTTACACACACCACCCTCCTCATCCCCAGTCAACCGTCGGTGTT GGTTGGCTTTGGCAGTGCCACGGGCAACTCCGAATTCATCGCTAAGCGGA TCCATGCCGAACTACAAGAAAAGCACGGCCTGAAAAGAGTGCAGCTCTTT GCCTTGAACGATTGGAAGAAGTTGTCCGACCCGACCTTTGAGGAGTACCA AGCAGGAATCTTTGTCTGCGCCACCACAGGGAATGGCGACGCACCGGAGA ACGCAGAGAAGTTCTGGCGGTTTTTGAAACGCCGCACGCAGCCCAAGACC TTGTTGAGTAAGGGCATGCACTTCGCCGTCCTGGGGCTGGGCGACACCAA CTATGACAAGTTTTGTCACATGGGCAAGAGCATGGACGCGCGCTTGGGGG AGGTGGGGGGATGCCGAGTGTGCAAGGTGGGGATGGCTGACGAGGCCATG GGGTTGGAAGGGACTGTGGAACCTTGGATTGACGCCTTGTACCCGGCCTT GCTCAAGGTGTTGGGTCTCGATGGGCAAGCAGGAGCAGGAGCAGTGGAGG CCTCACCACCGACGACGACGACTGCGACGAGTGCGACGACGGCGAGTGTT GGGAATGCTGCTGCTCCTGCTGCTGGTGTCGAGACCCCTGCAGTGGTAGC TGCGACATCTGTCGCGGCGGCCGCTGCCCCGACGGTCAATGGCAAAGAGG TTGATAAGGAGGAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAGGAG GACGCGGCTACAGCAGCAGTAACAACGGCAGTGGAAGCCAAGCTAACCCT GAAGGAACAGAAAGCCATGCATCAAAACCCCACAGAAATGTCAGGGCCGC AAATGCAAACGCGGGGGGGGGCGCTGACCAAGGAAAGTGGAGCCAGATGG TTGGCTGATATGGTGCTTTCTGAGGAGTTCTCTCGGATACAAAAAGAGGC GAAGGAGATGTTGAAGGCCACGCCCTTGGTACCCTACGCACCCTCGGTCA AGATCGTCGTCTCAAAGGAGGAGGAGGAAACAGCAGCTGCGGCACCTACT CCTGCTGCTACCAAAGGTACCAGTATAGCAGGGCGTAACCCCCTCGCCCT TGCTGCACCTATTCCAGTTGCCGCATCCCCCTCTCCGGCATCGGTGCCCT CCACCCCACCCACTCAACCCCCAATGACCATGAGCAACGGCACGCCTCAT TCCCTGCAAGTGAAGACGACCTTCCCCCCGTCCTCTGTTCCCTCCTCTTC CTCCCCTGCCGGCGCCGGCACCAGCATCAGCCCCGGCCCAATCTCCGGCC GTCTTTCTCCTTTCAGCGGAGTCGCCAACGGCGGCTGGCACAGTCCCTCC ATCTCCTCCCCCACCACCACCTCCGCCGGGGTTCCTGCTGCTGGTGTTGC GGTGGCTGCTGGTGGCACCTCCCCTTACTGCTACGAACATCCGGCCCGTG GGTTGGTGACCCGTGCCAGGTATTTGACAAAGACTGCGGAAAAAACTGCG GAGAGACGGGTGCTTGAGATAGAGATCGATACAAGCGCCTGCTCCCCGCC CTTTCCATATGTTCCTGGGGATGCCATAGGCCTAAGGTGCCCCAACCGAC CGGCGGCCGTGGACGTCGTCATGGCGAGGGTGGGTTGGAGGGGGGGAGGG GGGGGGCATGGTGAAGGTGGTGGCGGGGATGGCGCTGGGTGGGCTGTTGG GGGCAGAGGAATGGAAGGTGGAGGAGGTGGTGAGGGAGATGATGGATTTG GAGGGCTCGCCCAAGCCGCATGTCCTGCGGGTGCTGGCCTCCTTCACGCA GGACGAGGAGGACAGAGCGGTGTTGTTTTGGATGGGTGGAGGAGGGGGAG GGAGTGGAGGAGGGAAGGCCATGTATGAGAAGTGGGTGGTCAGGCAGCGG TTGACGATAGGGGAGGTGTTGGAGATGGTGCCGAGCTGCAGACCCACCTT AGCAGCATTGCTGGATGTGTTGTCGCCCATCCCCGCCCGGTATTATTCTG TGGCGTCTTCGCCGTTGGTGTGTCCCTCCAAGCTGACGGTGGCGTTCAGT GTGGTGAAGTATACGCTGGCCGTGGCCGGGGAGGGAGAGAGGGAGGGAGG GGTGGTTAGGAGGAAGGGACTGTGCACGACCTGGTTGGAGGAAATGCTGC GGGAGGCTGGTGCCACGGGTGAGACATCGGGCGACAAAATCCAGGACCTC CGTCTGTCTTCTGCTTTGCCCTCCGTCTCTATCTTCCTCAAGCCTGCGAA GGAATTTGTTTTGCCGGGGAGCGCCAAGTGGCCCTTGGTGCTCGTCGGGC CTGGCACGGGTGTTGCTCCATTTATGGGCTTTTTGTCGCACCGACGGGCA CGCCGGGCGGCTATTGAGAGCGCGAAAGCGGAGGTGTGTAGTGGCTACTG GAGGGGGGGATTTGAAGTGGAGGGGGGGGAGGAGGAGGGGGGTTGGGGGG ATGGGCGCAAAAGGAGGGGGAAGGGCCCATATTGTTGTTCTTTGGCTGTC GGACGCGGGACAAGGATTGGATATACCGGGAGGAAATGGAGGACTTTTTG AGGCAGGGGGTGTTGACGGAGATGCACACGGCGTTCTCGAGGGAGGCGGG GAAGAAGGTGTATGTGCAGGATCGTATGCGCGAGCAGGGGGCGAGGCTGG CACGGTTATTGTTGAAGGAGGGGGCGTATTTATATGTGTGTGGTGATGCA GAGAATATGGCTAGGGATGTGCATTCTAACTTGAAGGCGTTGCTGGTGCA ACATGGACAGGGACAACCAGGGAAGCCGGGGCAGGAGCAAGGAGGGGTGC GGACGGAGGAGGAGGCGGAGGCGTTTTTGAGTGAACTTAAGCAGCGACAG CGGTACGTCCTTGATATTTGGTCTTAAGATGAGGAGGAGGTATGAGGAGA CGGGAATGTGTGGAGGAGGTGATGATGTGTATGCGTAACGTGCGAGATAA AGTAGGTCAAATAACGTAGCCGCAAGAGATAAAGAACAAATTTGATGTCA GTGACATGAATTCAAGTAGTGCATATTTGTACGTCATACCGTTTCCTTTC GCTCTGCCTCTTCCCCCTTCCGTCATGGACTAGTTTGGATGCCGGGTGTG TGCTGGATGCGCGATGGAATCTTTACGGTGTGTTCGGAGGGAGGAGGTTG ACGGGCATCTCGTATGACCGCTTTGCAATTACCTATCCTTGCAATGTCGT TGTACTATGTACTAGCATGCCCTGAGGAACCCTGCGGCGACTAGAGGGCA TGGCTAGATGCCAAAACGGAACGTTAGTCGGCGAGAGATGCAACGCAAGG CGTTCACGACACTCATGATGATAATACTCCACCAGTATCTTGTCACAGTC ACTCACCTCGCCTACAACAACACCAAACAGGCACGGACGTGGTCCTCCGT CCAGGGCCTCGGATGAGCCAGTACTACCGGAGGCTGCACGGTGGTAGGGG AAAAAAACAAATTTATTCTCCCCCTTTGTCGCCGGGCGGAGCGCAAGACG GGCCCACAGGTGAGAGAAAGGGAGAGAAAAAGGGACAGGAGGGAGGGAGG AGCATACGTGCAGAGTAATATAAATGTAGGGATGAATGAGAGAGAAAAGG GCAAAAGGAAGCATGTCGAGTTCAAAAGCGAAATCTTTCGTTTCGCTTTA ATCTGCTTACCTTGTCAACAATAAAAGCAGATGGTTATGCATGGCCACCA CAATCAGCGGCAGAAGGAAACCCCATTCCCCCATGCGCCAATTTCAATGG CCAGCGATATCCTCGCCAACAACAGAAACAGCACGATGATCAGCAGCAGC GAGTAATTCCTTCCCTTTCCTCCTCCTCCTCCACGTCCCACCCGCCTTCC GACATCCTCGCCCGTCTACAGATTTCCCCCCCACCTTTCTCCACCTCAAC CTGCTCCCCTATGCCTATGGATATCAAACTTAAAGATAAAGGGGGAGTCA GAGGCCCACTCGCCCTTCTTTCTCCATCCTCCCCGCCACGAGAACACCGA GGGAGGGAGGGCAAGGGGGAACGGAAGGATGGGGAGGAGAAGGAGGAGGA GGAGGAGACATTAGTAGAAGAAGAAGAAGACGACAACGAAGAGGCCGACA AGATGGATATCGACGAAGAAGAGGTGGAAGAGATGAGACTTGAACAACAA GGCGGAGGAGGAGCGGGTAAAAGACAACATCAACAACGCCACGCGGCGTC TTTCTTTCTCCTACAGCAGCAGGGGGGGGGACACACAGTGGGGATTGGAG CAGGACCTTAACCTCTTTGGTCGCGGCTGCTACGTACGCAGGGGGGACAC CTCTTATAACACCCTCGAAGCGGAGCAATCACGTCAAATGGCGGTATTCC AAGCAGGGACTCCAGGAGCAGGAGGGGGGGCAGGAGGGAGGGGGGGAGAG AGGGGCAGAGGGAGAAGAGGTACATTATGGTCAAGGTGGCCCGGCAAACG CGGAGGGAGAGAAGGACAAGTGTAAGCGGCAGAAAAGGGACAGCACCCGC TTTCCGCCCTCGTCCTCTTTCTCCTCCTCTTTCTCTTCCTCCTCCTCCTC TTCCTCCTCCCCCTCTCCCTTTCCCCACGAAATCAACCCCCCTCCTACGC GTCATCCCTTCTTGCCTCCCGTCTATCCTCGCCAGCCCACCTACGCTCAT ATTCCGACGCCCAACACCCGCTTTCCATGTTACATAGTAGGAGGGGGGAT GGGAGGGAGGGAGGGAAGGGAGGAAGACAGGGAGTGGCGTCAGCGGGAGG AAAAGAAGCAAAAGAGGGAGTGGGCGCTGGCAGAAGCACAGGAAGGACGG CCTCCACCCACGCCCTACTTTTTCCTCTCGGCCTATCAGCGCAGGCAGTT GCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCAACAGCAGCAAC AGCAACAGCTGCGCCCCCCCCTCCCAGCGCGTCTTTCCTCTTCTCCATCG GGCTTTTCCTCGGTCTTATCCCATGATCCTCCTTCCTCGCACTTTCCACC ACCTCTATGGGCTCTGGAACCAGCCCAGCATCAGAAGCAGGAGCAGGAGC GGCAGCCGCAGCAGCGGCAACACAAGGAGGAGGAGGAGCAGGAGGAGCAG GAGGGGCAGGAGAGGTTTAAGGAGGAGGGGGACGAAGAGGAAGAGGGGGA TCAGGATGGAAAAAAAGGAGACGAGGAGACGGATGTAGAGGAGGAGGAGG AAGGGGAGGAGGAGGAGGAAGGGGAGGAGGGCGAGCTGAAGGGGCTGGAG GAGGAAGGCGAAAGGGAGGGAGCGAGGGAGGGCGACGACTATCCTGTGTC GGATCTTCATCAGGTGCCAGTTCGCATGGAGAGGAGGGGGGAAAGGAGGG AGGGAGCAAGGGAGGGATCGAAAGAGGGAAGGAGCGTATGGAGGCCTCTG GGAGTACTGCTGTGCGTCACGGGCATGATGCTCTTGGGGTGGGGTTTGGC CATCATCCCTCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT CGTCATTTTCCATTCAGGACACTACAAGCCCTGTGGATGGGAAGTGTGTG CGTCCTTTTCCAGCCCGAGGGGGGGAAGGAGGGAGGGGTGGCATGGTGGG GGCAGATAAGCAGATCCGGTCTGTGTGCCACGAAGGAGGAGGGATTAGAG GAGTAGGAGGAGCTGGAGGAGGAGGTGGGAGAGGAAACGAGGTTGGAGAG GAGGAGGGAGTAGAAGGAGGAGCTGGAGATCGAAGGATACGTAAAGAAAG TGGGCGAAATAGTCGATTGCCTGGCTACGGAAGCTTCGCGGAATGACGGG TGGAAGAGAGGCAGGCAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGGA
back to top

Coding sequence (CDS) from alignment at chr4:110568..116516+

>NO04G00250.1 ID=NO04G00250.1|Name=NO04G00250.1|organism=Nannochloropsis oceanica|type=CDS|length=4773bp|location=Sequence derived from alignment at chr4:110568..116516+ (Nannochloropsis oceanica)
ATGAGCGACGACCCCGCAAGTCAACCGTCGGTGTTGGTTGGCTTTGGCAG
TGCCACGGGCAACTCCGAATTCATCGCTAAGCGGATCCATGCCGAACTAC
AAGAAAAGCACGGCCTGAAAAGAGTGCAGCTCTTTGCCTTGAACGATTGG
AAGAAGTTGTCCGACCCGACCTTTGAGGAGTACCAAGCAGGAATCTTTGT
CTGCGCCACCACAGGGAATGGCGACGCACCGGAGAACGCAGAGAAGTTCT
GGCGGTTTTTGAAACGCCGCACGCAGCCCAAGACCTTGTTGAGTAAGGGC
ATGCACTTCGCCGTCCTGGGGCTGGGCGACACCAACTATGACAAGTTTTG
TCACATGGGCAAGAGCATGGACGCGCGCTTGGGGGAGGTGGGGGGATGCC
GAGTGTGCAAGGTGGGGATGGCTGACGAGGCCATGGGGTTGGAAGGGACT
GTGGAACCTTGGATTGACGCCTTGTACCCGGCCTTGCTCAAGGTGTTGGG
TCTCGATGGGCAAGCAGGAGCAGGAGCAGTGGAGGCCTCACCACCGACGA
CGACGACTGCGACGAGTGCGACGACGGCGAGTGTTGGGAATGCTGCTGCT
CCTGCTGCTGGTGTCGAGACCCCTGCAGTGGTAGCTGCGACATCTGTCGC
GGCGGCCGCTGCCCCGACGGTCAATGGCAAAGAGGTTGATAAGGAGGAGG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAGGAGGACGCGGCTACAGCA
GCAGTAACAACGGCAGTGGAAGCCAAGCTAACCCTGAAGGAACAGAAAGC
CATGCATCAAAACCCCACAGAAATGTCAGGGCCGCAAATGCAAACGCGGG
GGGGGGCGCTGACCAAGGAAAGTGGAGCCAGATGGTTGGCTGATATGGTG
CTTTCTGAGGAGTTCTCTCGGATACAAAAAGAGGCGAAGGAGATGTTGAA
GGCCACGCCCTTGGTACCCTACGCACCCTCGGTCAAGATCGTCGTCTCAA
AGGAGGAGGAGGAAACAGCAGCTGCGGCACCTACTCCTGCTGCTACCAAA
GGTACCAGTATAGCAGGGCGTAACCCCCTCGCCCTTGCTGCACCTATTCC
AGTTGCCGCATCCCCCTCTCCGGCATCGGTGCCCTCCACCCCACCCACTC
AACCCCCAATGACCATGAGCAACGGCACGCCTCATTCCCTGCAAGTGAAG
ACGACCTTCCCCCCGTCCTCTGTTCCCTCCTCTTCCTCCCCTGCCGGCGC
CGGCACCAGCATCAGCCCCGGCCCAATCTCCGGCCGTCTTTCTCCTTTCA
GCGGAGTCGCCAACGGCGGCTGGCACAGTCCCTCCATCTCCTCCCCCACC
ACCACCTCCGCCGGGGTTCCTGCTGCTGGTGTTGCGGTGGCTGCTGGTGG
CACCTCCCCTTACTGCTACGAACATCCGGCCCGTGCCCCAACCGACCGGC
GGCCGTGGACGTCGTCATGGCGAGGGTGGGTTGGAGGGGGGGAGGGGGGG
GGCATGGTGAAGGTGGTGGCGGGGATGGCGCTGGGTGGGCTGTTGGGGGC
AGAGGAATGGAAGGTGGAGGAGGTGGTGAGGGAGATGATGGATTTGGAGG
GCTCGCCCAAGCCGCATGTCCTGCGGGTGCTGGCCTCCTTCACGCAGGAC
GAGGAGGACAGAGCGGTGTTGTTTTGGATGGGTGGAGGAGGGGGAGGGAG
TGGAGGAGGGAAGGCCATGTATGAGAAGTGGGTGGTCAGGCAGCGGTTGA
CGATAGGGGAGGTGTTGGAGATGGTGCCGAGCTGCAGACCCACCTTAGCA
GCATTGCTGGATGTGTTGTCGCCCATCCCCGCCCGGTATTATTCTGTGGC
GTCTTCGCCGTTGGTGTGTCCCTCCAAGCTGACGGTGGCGTTCAGTGTGG
TGAAGTATACGCTGGCCGTGGCCGGGGAGGGAGAGAGGGAGGGAGGGGTG
GTTAGGAGGAAGGGACTGTGCACGACCTGGTTGGAGGAAATGCTGCGGGA
GGCTGGTGCCACGGGTGAGACATCGGGCGACAAAATCCAGGACCTCCGTC
TGTCTTCTGCTTTGCCCTCCGTCTCTATCTTCCTCAAGCCTGCGAAGGAA
TTTGTTTTGCCGGGGAGCGCCAAGTGGCCCTTGGTGCTCGTCGGGCCTGG
CACGGGTGTTGCTCCATTTATGGGCTTTTTGTCGCACCGACGGGCACGCC
GGGCGGCTATTGAGAGCGCGAAAGCGGAGGATTGGATATACCGGGAGGAA
ATGGAGGACTTTTTGAGGCAGGGGGTGTTGACGGAGATGCACACGGCGTT
CTCGAGGGAGGCGGGGAAGAAGGTGTATGTGCAGGATCGTATGCGCGAGC
AGGGGGCGAGGCTGGCACGGTTATTGTTGAAGGAGGGGGCGTATTTATAT
GTGTGTGGTGATGCAGAGAATATGGCTAGGGATGTGCATTCTAACTTGAA
GGCGTTGCTGGTGCAACATGGACAGGGACAACCAGGGAAGCCGGGGCAGG
AGCAAGGAGGGGTGCGGACGGAGGAGGAGGCGGAGGCGTTTTTGAGTGAA
CTTAAGCAGCGACAGCGTTTGGATGCCGGGTGTGTGCTGGATGCGCGATG
GAATCTTTACGGCACGGACGTGGTCCTCCGTCCAGGGCCTCGGATGAGCC
AGTACTACCGGAGGCTGCACGGTGGTAGGGGAAAAAAACAAATTTATTCT
CCCCCTTTGTCGCCGGGCGGAGCGCAAGACGGGCCCACAGATGGTTATGC
ATGGCCACCACAATCAGCGGCAGAAGGAAACCCCATTCCCCCATGCGCCA
ATTTCAATGGCCAGCGATATCCTCGCCAACAACAGAAACAGCACGATGAT
CAGCAGCAGCGAGTAATTCCTTCCCTTTCCTCCTCCTCCTCCACGTCCCA
CCCGCCTTCCGACATCCTCGCCCGTCTACAGATTTCCCCCCCACCTTTCT
CCACCTCAACCTGCTCCCCTATGCCTATGGATATCAAACTTAAAGATAAA
GGGGGAGTCAGAGGCCCACTCGCCCTTCTTTCTCCATCCTCCCCGCCACG
AGAACACCGAGGGAGGGAGGGCAAGGGGGAACGGAAGGATGGGGAGGAGA
AGGAGGAGGAGGAGGAGACATTAGTAGAAGAAGAAGAAGACGACAACGAA
GAGGCCGACAAGATGGATATCGACGAAGAAGAGGTGGAAGAGATGAGACT
TGAACAACAAGGCGGAGGAGGAGCGGGTAAAAGACAACATCAACAACGCC
ACGCGGCGTCTTTCTTTCTCCTACAGCAGCAGGGGGGGGGACACACACGG
AGCAATCACGTCAAATGGCGGTATTCCAAGCAGGGACTCCAGGAGCAGGA
GGGGGGGCAGGAGGGAGGGGGGGAGAGAGGGGCAGAGGGAGAAGAGGTAC
ATTATGGTCAAGGTGGCCCGGCAAACGCGGAGGGAGAGAAGGACAAGTGT
AAGCGGCAGAAAAGGGACAGCACCCGCTTTCCGCCCTCGTCCTCTTTCTC
CTCCTCTTTCTCTTCCTCCTCCTCCTCTTCCTCCTCCCCCTCTCCCTTTC
CCCACGAAATCAACCCCCCTCCTACGCGTCATCCCTTCTTGCCTCCCGTC
TATCCTCGCCAGCCCACCTACGCTCATATTCCGACGCCCAACACCCGCTT
TCCATGTTACATAGTAGGAGGGGGGATGGGAGGGAGGGAGGGAAGGGAGG
AAGACAGGGAGTGGCGTCAGCGGGAGGAAAAGAAGCAAAAGAGGGAGTGG
GCGCTGGCAGAAGCACAGGAAGGACGGCCTCCACCCACGCCCTACTTTTT
CCTCTCGGCCTATCAGCGCAGGCAGTTGCAGCAGCAGCAGCAGCAACAGC
AGCAGCAACAGCAGCAACAGCAGCAACAGCAACAGCTGCGCCCCCCCCTC
CCAGCGCGTCTTTCCTCTTCTCCATCGGGCTTTTCCTCGGTCTTATCCCA
TGATCCTCCTTCCTCGCACTTTCCACCACCTCTATGGGCTCTGGAACCAG
CCCAGCATCAGAAGCAGGAGCAGGAGCGGCAGCCGCAGCAGCGGCAACAC
AAGGAGGAGGAGGAGCAGGAGGAGCAGGAGGGGCAGGAGAGGTTTAAGGA
GGAGGGGGACGAAGAGGAAGAGGGGGATCAGGATGGAAAAAAAGGAGACG
AGGAGACGGATGTAGAGGAGGAGGAGGAAGGGGAGGAGGAGGAGGAAGGG
GAGGAGGGCGAGCTGAAGGGGCTGGAGGAGGAAGGCGAAAGGGAGGGAGC
GAGGGAGGGCGACGACTATCCTGTGTCGGATCTTCATCAGGTGCCAGTTC
GCATGGAGAGGAGGGGGGAAAGGAGGGAGGGAGCAAGGGAGGGATCGAAA
GAGGGAAGGAGCGTATGGAGGCCTCTGGGAGTACTGCTGTGCGTCACGGG
CATGATGCTCTTGGGGTGGGGTTTGGCCATCATCCCTCCTTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCATTTTCCATTCAGGACACT
ACAAGCCCTGTGGATGGGAAGTGTGTGCGTCCTTTTCCAGCCCGAGGGGG
GGAAGGAGGGAGGGGTGGCATGGTGGGGGCAGATAAGCAGATCCGGTCTG
TGTGCCACGAAGGAGGAGGGATTAGAGGAGTAGGAGGAGCTGGAGGAGGA
GGTGGGAGAGGAAACGAGGTTGGAGAGGAGGAGGGAGTAGAAGGAGGAGC
TGGAGATCGAAGGATACGTAAAGAAAGTGGGCGAAATAGTCGATTGCCTG
GCTACGGAAGCTTCGCGGAATGA
back to top
Synonyms
Publications