NO04G00140.3, NO04G00140.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00140.3
Unique NameNO04G00140.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1933
Alignment locationchr4:62498..64665 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:62498..64665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G00140.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00140NO04G00140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00140.3NO04G00140.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00140.3.cds1NO04G00140.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00140.3.cds2NO04G00140.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00140.3 ID=NO04G00140.3|Name=NO04G00140.3|organism=Nannochloropsis oceanica|type=mRNA|length=1933bp
ACAGCTATGCCCGATGCCACCGCCAACCCCCAAAGATGAGGTCAAGTACT
GCCCGCAGCACGTATCCCTGCAAGCTTTCCCGGCCTTGTCTTCTTCCTCT
TCCTCCTGTTGTTGCTTCTCCTGCTCCTCATCCTCCTGCTCCTCCTCTAC
TTGTCACTCTCAAGCCAACGTCGCCGCCAATAGTAGTACTTCATCATCAC
ATGAGGCATCGGCTTGGAAATATAAGGTCGTACGAGGCTCTCTGTATGTC
GTGGGCCCTGCAATCGAGACCTTAGCCGAGGCAGGACATGCATACTGCAT
GGACCATACTACCAGTGCCGCTGCGGCGCCTGCTTGTGATATTATGCCGT
CCCTAATACAAGGTAGGTGAATGGTTGAAGATGAGAAGATGGACGAGAGA
AGGAAAAAAGTATTTAGTAAACTGTGCCCCCACTTACCACCACTTCATTT
TCTTTGTTCATGACTCTTTCCGTCCCTCATTCGCCTTCCCCCGCCTCGTT
CCCTCCCTCCTTCTCGCACTCGACGTACGTCCCACCCTCTTCAATTCCCC
AGCTGAAGACATAGCCTTCTTTGCTGATGCACGGAGACGTCGTGCACAGC
GCGATGGCCCCGCCCACCATCTCACGCTCCTGCACCGAACCGAAATTCAG
GCGGAGGGTGAGAAGGAGGCCGGAATCGAGGACTGTGGAGGGAGAGACAG
AGACGACAATACAGCAAGTGCTGTTGATACTCCTGCTCCTACTCCTACTT
CACCTACATCTACGGGCGCTTCCATTCCGTGCAAGCCCGAGAGGAAAAAG
AGGGTGGACGAAAATGAGCTGCTCTCGTCAGCTCCCTCTCGGCGTAGCTC
CCACGCCACCACCATGCCCGAGGACAAGGCCAAGGGCGACGAGAAAGAGA
CCCAGGAGCAAGAGGGGACGAAGATAATGAGAAAAGGAGCAGATCCATAC
AACAGTACGGAAGGGGTGCCACGTTCGTTTTCTTCCCCTTCCTCTTCCAT
GGACCGCTACAAGGACGACGACAAAGACGAGGCGTTCGCTTCCGCCCTGC
TTGCCATGTTGACCCTTCTCCTGAACACAAACCTCCTCCCTCACATACCT
CCCCTCCTATATGACCCTCTACCTCTTTATGTCTACCGGACAAGTGGGGA
GGGGCGAGCGCTGGCGATGTCGGTCCTGTTCTTGCCGGGGGAGTGGCTTC
GGTATTGGCAAGGGCGGGTAAGGAGGGGAGGAAGAAAGGCATATCATCCC
TTGCACGTAACCCTGGGCTTTGAGAGGCAGGACGAGCGGGACCAAGAGGC
GCGGCGCTGGGGGCGGGTCCGTGTGCTGGGATATGGTTTGTCAAGGCGGA
GGACGGCAGAGGTTTTGGAGGCATTGGTAAATGTGCTCGTGAAAGGAGAA
GGAGAAGGAGAAGGGAGGAAAGGAGGACAATTGGGTACTTTTCTTCCTCG
GGTTCGAGATTTGGCGGTTGAGGTCATGCGTGTGCTGGAAAGGAGGATAG
AGGGAAGAACGGAGGGCGGTCGGGAGAATGAGGAGGAGAATGAGGAGGAG
GTGGAAGAGGAGGAGGAGGAAGTGAGGGAGATCACGGCCACACTCACGGC
CTGCAGGCGGATACTTGATTCTATGGCGGGCGGGTCGGCGTCGGGTTTGT
GTTGGCAAGGGAAAGAGGAGGAGAAAGAGACACCTTTACCGTTGGAGCTT
GCGACAGGTGGGTCGTCGCTTGTCAGATATGCAGCTCGAGGACGTGGGTG
CCTTTGAGAGCAGCAGCTGGATCGCTACCAAGGCACCCAGATGGGCGTAT
ATGTAATAAGACTGACGAGGAGGGAGAGAGGTAGGCCCTGGAAATTGTGC
CTGTTCACATATCAAGTAGCCATGAGAGATGGAGACCCCTGCCGGCCTTC
AAACCACAACACAAGGAAGCACACCAACCGACG
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protein sequence of NO04G00140.3

>NO04G00140.3-protein ID=NO04G00140.3-protein|Name=NO04G00140.3|organism=Nannochloropsis oceanica|type=polypeptide|length=459bp
MRRWTREGKKYLVNCAPTYHHFIFFVHDSFRPSFAFPRLVPSLLLALDVR
PTLFNSPAEDIAFFADARRRRAQRDGPAHHLTLLHRTEIQAEGEKEAGIE
DCGGRDRDDNTASAVDTPAPTPTSPTSTGASIPCKPERKKRVDENELLSS
APSRRSSHATTMPEDKAKGDEKETQEQEGTKIMRKGADPYNSTEGVPRSF
SSPSSSMDRYKDDDKDEAFASALLAMLTLLLNTNLLPHIPPLLYDPLPLY
VYRTSGEGRALAMSVLFLPGEWLRYWQGRVRRGGRKAYHPLHVTLGFERQ
DERDQEARRWGRVRVLGYGLSRRRTAEVLEALVNVLVKGEGEGEGRKGGQ
LGTFLPRVRDLAVEVMRVLERRIEGRTEGGRENEEENEEEVEEEEEEVRE
ITATLTACRRILDSMAGGSASGLCWQGKEEEKETPLPLELATGGSSLVRY
AARGRGCL*
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mRNA from alignment at chr4:62498..64665+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00140.3 ID=NO04G00140.3|Name=NO04G00140.3|organism=Nannochloropsis oceanica|type=mRNA|length=2168bp|location=Sequence derived from alignment at chr4:62498..64665+ (Nannochloropsis oceanica)
ACAGCTATGCCCGATGCCACCGCCAACCCCCAAAGATGAGGTCAAGTACT
GCCCGCAGCACGTATCCCTGCAAGCTTTCCCGGCCTTGTCTTCTTCCTCT
TCCTCCTGTTGTTGCTTCTCCTGCTCCTCATCCTCCTGCTCCTCCTCTAC
TTGTCACTCTCAAGCCAACGTCGCCGCCAATAGTAGTACTTCATCATCAC
ATGAGGCATCGGCTTGGAAATATAAGGTCGTACGAGGCTCTCTGTATGTC
GTGGGCCCTGCAATCGAGACCTTAGCCGAGGCAGGACATGCATACTGCAT
GGACCATACTACCAGTGCCGCTGCGGCGCCTGCTTGTGATATTATGCCGT
CCCTAATACAAGGTAGGTGAATGGTTGAAGATGAGAAGATGGACGAGAGA
AGGAAAAAAGTATTTAGTAAACTGTGCCCCCACTTACCACCACTTCATTT
TCTTTGTTCATGACTCTTTCCGTCCCTCATTCGCCTTCCCCCGCCTCGTT
CCCTCCCTCCTTCTCGCACTCGACGTACGTCCCACCCTCTTCAATTCCCC
AGCTGAAGACATAGCCTTCTTTGCTGATGCACGGAGACGTCGTGCACAGC
GCGATGGCCCCGCCCACCATCTCACGCTCCTGCACCGAACCGAAATTCAG
GCGGAGGGTGAGAAGGAGGCCGGAATCGAGGACTGTGGAGGGAGAGACAG
AGACGACAATACAGCAAGTGCTGTTGATACTCCTGCTCCTACTCCTACTT
CACCTACATCTACGGGCGCTTCCATTCCGTGCAAGCCCGAGAGGAAAAAG
AGGGTGGACGAAAATGAGCTGCTCTCGTCAGCTCCCTCTCGGCGTAGCTC
CCACGCCACCACCATGCCCGAGGACAAGGCCAAGGGCGACGAGAAAGAGA
CCCAGGAGCAAGAGGGGACGAAGATAATGAGAAAAGGAGCAGATCCATAC
AACAGTACGGAAGGGGTGCCACGTTCGTTTTCTTCCCCTTCCTCTTCCAT
GGACCGCTACAAGGACGACGACAAAGACGAGGCGTTCGCTTCCGCCCTGC
TTGCCATGTTGACCCTTCTCCTGAACACAAACCTCCTCCCTCACATACCT
CCCCTCCTATATGACCCTCTACCTCTTTATGTCTACCGGACAAGTGGGGA
GGGGCGAGCGCTGGCGATGTCGGTCCTGTTCTTGCCGGGGGAGTGGCTTC
GGTATTGGCAAGGGCGGGTAAGGAGGGGAGGAAGAAAGGTAGGGGGAGGA
CGGGAAGGGGAGGCAAGGGGAGAGAAGGATGCTTCTCTTTACTCTTGTTA
AGTGGCAGACGACTGTAGGGTAGGAGCCGGCGAGGGTGGAAGCAGGATGA
AAATATCTTGCAGAGCAACAGTCACAAGCAGGCGGCGTACGAAGAATTTA
GTAAATGCATACACTCTCCCACCCTTTCTCCCCCCTCTCCTTCCCTCTCG
TCCTCCCTCCCTCCTTTCCTTAGGCATATCATCCCTTGCACGTAACCCTG
GGCTTTGAGAGGCAGGACGAGCGGGACCAAGAGGCGCGGCGCTGGGGGCG
GGTCCGTGTGCTGGGATATGGTTTGTCAAGGCGGAGGACGGCAGAGGTTT
TGGAGGCATTGGTAAATGTGCTCGTGAAAGGAGAAGGAGAAGGAGAAGGG
AGGAAAGGAGGACAATTGGGTACTTTTCTTCCTCGGGTTCGAGATTTGGC
GGTTGAGGTCATGCGTGTGCTGGAAAGGAGGATAGAGGGAAGAACGGAGG
GCGGTCGGGAGAATGAGGAGGAGAATGAGGAGGAGGTGGAAGAGGAGGAG
GAGGAAGTGAGGGAGATCACGGCCACACTCACGGCCTGCAGGCGGATACT
TGATTCTATGGCGGGCGGGTCGGCGTCGGGTTTGTGTTGGCAAGGGAAAG
AGGAGGAGAAAGAGACACCTTTACCGTTGGAGCTTGCGACAGGTGGGTCG
TCGCTTGTCAGATATGCAGCTCGAGGACGTGGGTGCCTTTGAGAGCAGCA
GCTGGATCGCTACCAAGGCACCCAGATGGGCGTATATGTAATAAGACTGA
CGAGGAGGGAGAGAGGTAGGCCCTGGAAATTGTGCCTGTTCACATATCAA
GTAGCCATGAGAGATGGAGACCCCTGCCGGCCTTCAAACCACAACACAAG
GAAGCACACCAACCGACG
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Coding sequence (CDS) from alignment at chr4:62498..64665+

>NO04G00140.3 ID=NO04G00140.3|Name=NO04G00140.3|organism=Nannochloropsis oceanica|type=CDS|length=1377bp|location=Sequence derived from alignment at chr4:62498..64665+ (Nannochloropsis oceanica)
ATGAGAAGATGGACGAGAGAAGGAAAAAAGTATTTAGTAAACTGTGCCCC
CACTTACCACCACTTCATTTTCTTTGTTCATGACTCTTTCCGTCCCTCAT
TCGCCTTCCCCCGCCTCGTTCCCTCCCTCCTTCTCGCACTCGACGTACGT
CCCACCCTCTTCAATTCCCCAGCTGAAGACATAGCCTTCTTTGCTGATGC
ACGGAGACGTCGTGCACAGCGCGATGGCCCCGCCCACCATCTCACGCTCC
TGCACCGAACCGAAATTCAGGCGGAGGGTGAGAAGGAGGCCGGAATCGAG
GACTGTGGAGGGAGAGACAGAGACGACAATACAGCAAGTGCTGTTGATAC
TCCTGCTCCTACTCCTACTTCACCTACATCTACGGGCGCTTCCATTCCGT
GCAAGCCCGAGAGGAAAAAGAGGGTGGACGAAAATGAGCTGCTCTCGTCA
GCTCCCTCTCGGCGTAGCTCCCACGCCACCACCATGCCCGAGGACAAGGC
CAAGGGCGACGAGAAAGAGACCCAGGAGCAAGAGGGGACGAAGATAATGA
GAAAAGGAGCAGATCCATACAACAGTACGGAAGGGGTGCCACGTTCGTTT
TCTTCCCCTTCCTCTTCCATGGACCGCTACAAGGACGACGACAAAGACGA
GGCGTTCGCTTCCGCCCTGCTTGCCATGTTGACCCTTCTCCTGAACACAA
ACCTCCTCCCTCACATACCTCCCCTCCTATATGACCCTCTACCTCTTTAT
GTCTACCGGACAAGTGGGGAGGGGCGAGCGCTGGCGATGTCGGTCCTGTT
CTTGCCGGGGGAGTGGCTTCGGTATTGGCAAGGGCGGGTAAGGAGGGGAG
GAAGAAAGGCATATCATCCCTTGCACGTAACCCTGGGCTTTGAGAGGCAG
GACGAGCGGGACCAAGAGGCGCGGCGCTGGGGGCGGGTCCGTGTGCTGGG
ATATGGTTTGTCAAGGCGGAGGACGGCAGAGGTTTTGGAGGCATTGGTAA
ATGTGCTCGTGAAAGGAGAAGGAGAAGGAGAAGGGAGGAAAGGAGGACAA
TTGGGTACTTTTCTTCCTCGGGTTCGAGATTTGGCGGTTGAGGTCATGCG
TGTGCTGGAAAGGAGGATAGAGGGAAGAACGGAGGGCGGTCGGGAGAATG
AGGAGGAGAATGAGGAGGAGGTGGAAGAGGAGGAGGAGGAAGTGAGGGAG
ATCACGGCCACACTCACGGCCTGCAGGCGGATACTTGATTCTATGGCGGG
CGGGTCGGCGTCGGGTTTGTGTTGGCAAGGGAAAGAGGAGGAGAAAGAGA
CACCTTTACCGTTGGAGCTTGCGACAGGTGGGTCGTCGCTTGTCAGATAT
GCAGCTCGAGGACGTGGGTGCCTTTGA
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Synonyms
Publications