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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:1659810..1663968 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G05790.5 vs.
Match: ARF12494.1 (hypothetical protein Klosneuvirus_6_56 [Klosneuvirus KNV1]) HSP 1 Score: 117.1 bits (292), Expect = 1.100e-22 Identity = 77/238 (32.35%), Postives = 121/238 (50.84%), Query Frame = 0
Query: 92 SKSMVPSNTTVVVIYPEVIRGALEIGDIHVRWILAAVGINVAENITDSWNRDDLVFNYATSTGNNIPVSNVLQVVDTPTDGDETDISDEDFNNRDRSGIAWMMRKGPKYHNEIEFIHDIPGYETTKFE-RGAVSSLRKFEYFVSYDPYTYWSWFAAMQGTVSIVYPLANVSKAQW--ALGTFVGSYLQDQNLTEIPGVAYGWEESEIEYARRTMHKLRSFLVNLRKWGAEVTVPRFTR 327
SKS + ++ +VIYPE+I+G VRW+L VGI+ + I +W +DDLVF+Y+T P + Q+ + + + + + RSG +M+RKG ++H I+ +H K + + EYF YDPY+++ AA+ G + I+YPL N +K W G F Q NL+ G+AYG E EIEYA+ T+H + +G E T+ +F +
Sbjct: 73 SKSQIINDENTIVIYPEIIKGNPLNAKYVVRWLLCDVGIHTDKEIYKTWGKDDLVFHYSTFNMKYNP-EKITQLYTIWINPNVKNTNPTE----QRSGSCYMIRKGNQFHKTIKNMHPSDSILLDKNSLEDNIKIFNEKEYFYCYDPYSFYDSIAALCGCIPIIYPLENSNKLDWLKTKGLFQVYLNQRDNLS---GIAYGNEPIEIEYAKNTLHLASQEKQDALNFGLE-TIKKFVK 301
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G05790.5 ID=NO03G05790.5|Name=NO03G05790.5|organism=Nannochloropsis oceanica|type=mRNA|length=4042bp
CGATGCCTTATAGCCGCCGACATGCCGGTTTTGAATTCCTTCCCACAATA
GTTTCATGGCCACGAGTTCCCTCTCTTGCCTCAGGGATCTCTTTCCCTTC
CCAAGCGCACACGTGTTTCACCCATGTGTCCATGCCACTGTATTGCCCCG
CCCTTATGCTGCTTGCTTTGACTAGCCAAGCAAGTGCTTCGACCCAGCAG
TCCTTCTCTCATCATCACCCAACGGCTCTCGCTTTCTCCCTTCTTCCGGC
CTGCACATCATAACCTCTATCTGCCCTCCCGACGACCATTGCCAACTCCG
AGCATGGATATAAATGCAGCAAATGCTAGGGTCCCACCCTGTTGCCCTAC
ATCAAGATGCATGTAATGTGCTTTGCCCTCCTTTTGCCAGTGAGGTCATG
GCCCTGCCATCATCATCCCTGGATTTCCTACCACCCGTGCTCATGCCCTT
CTACACCACTCCCTCGTCTCTCGAGGAATGGGTGCGCCGTAGTCCTACCA
CCAACACCTGGGTCCGTTGGCCCCATGTCATGCCATGTCATGGCCCTGGT
TGTGTGCATCGGGCAGCCTCCTGCTGCATGGAAGGCATGGCCTAACCTTC
CCAGCCCTGCTGTTGCTTCCTTTTTTGCGTGCATTACAGCCGCACCCCGG
GGAGCCCTGGACCTACAAGCACGCACCTTACCACACGACTAGGGACCTTT
TGGGAATTTTCAGGGCGTCCAGGTGCGACAGGATGCACGTCTGCGAGAGC
ATAATTGCTGATTGTCCCCGTCCCTCTTTGTTTACCCCCCCTTCTTACCC
CGTGCTCCTACTTCTCTTATCCTCTGAGGGGCTGGGATGCATGATGAGCC
ATTCTTTCCGACCCTTTAGGTCACAGTCGAGAATGCTGGGGAGCTGGTCT
TGGTGTGAGATGCCATCTTGTGCGTGTCCTCGTGGCTCATGCTCCTTCCT
CCCCTGTCCACCGTGCTTTCCTCCCTCTTACTCGAGCTGCGTCACGACCT
TCCGCCACTCCGTGTGTGTATGATGTTGCTATTACCTGTACTACCTGTAC
TCCTTGGATTTCTATTACCATGACAGGAAAGCCAATTACGACAGTACGTC
CTTCCCCCGTCACTCATCCTCCCCACCTCCCTCCTTATCCCATCCTTTTT
GCTCCAGCGCTGTCATGCCGCAAATTTTCCGCTGCACTGACACCAACATC
CACGACGAATGCAAGATTTTCTCTGTCAACAAGCCTCAAAAAGACCGCCA
CCGCCAAAAGTCTTACTCGAACGAAGTGAACCTGACGGTAGACGGCAGGG
TCGTTGTCTTCAAATGCGACGACAACAGGAATTTTCCCTGCGCATGCGTC
ATGGTGTTACTGTGTCAGGTCGTGGATTATTCCGGAAGTTCTATACACGT
AGTGGATGACATTAGGTTTGTGCCGGCCCTGGTGCGGAGAGCCAATAAAC
GAGTGACTACGTAATATAGGCATTTATCCGAATTGTGTTTTGGACGTGTC
CGGGCTATTTTTTAATCGATCTGCTTACGAACTTTTTTCGAACCTTTCCG
TCCTTTCTCACCCTCACTCGATTCAAATTATCCATCCGCATGGCTTTAAA
AACCATATACAATGTAGAGTGCAGGAGGTTGGAAAAAAGCCGGTTCTTCT
TGAAGGGAAGCATTGCGTTTCCCAACGACTTGGTCCAATCCATGTCAGAA
GGTGGCAAGCACCGCAACAAAATGTCCGCATACGGCGTAATGGCCTGTCT
CGGAAAGACTACCTTAATCGACGAATACAATACGGCATACAGCCTATCTG
TATCGCCGCCTTTGGCTTCAAAGATGGACTCCATTTTCGCCCGAGCCGCT
TAGGGGAAGCTTTTTGGCGCCATCCTATTCGTCGGATTCAAGAAGAAGCA
AAGAATTAGGCCAAATGTCATTGTAAATCGATAATAAACAACATACACGG
ATGAAGGGGATCGTCCACACTCAGATCTGGCCACCATTTGTAAGATTCAC
AAGCTGCAGCAACCCACTCATATGACAGAACTACTATTGGTCAAGCCAGT
GTGTTGTGAGACTGACCGTAATAAATATTGTGTTTTTAAAGTTGGCATTA
TGGGCCTGACAATCAGCATCATTTTCCTGGGGGATGTTTGGCTGCTTCGT
TGAAGTAACCTCAGCCATGGGCCTCCAGTGCTATCATATAGGCTGTTTAA
AACCTTGTTCTTCATAAAGTATTTGCATGAGATTTGTGCTTTCATGTAAT
ACATTGTGTAGATGAGCCATCGGCATGATGAATGACGACACAAATCCCAT
TCTACGGCCGAAATGTCAAGATACACACTCCCTACCAACTCGGGCCTAAT
TTTGGCCGTGTCGCGCACTCGCAGCAACAATTGAATCTTATCCGTTGCTT
GGCTGTCGTGGGTTTCAAGCCCCTCGTCGATCACGGCATACCGGCAGGTT
GGTGGTAAAGTCTCTGCGATCCAAAGGATGTTCTCCTCCACACCACCGCG
TTATCGCTAGGAGCGCTGGGAGTGGGGTACATGTACTATCTGAACTATTT
TTTAAAAAGAGCGAACGATATTCCAAACTTCAAGATCGAGCTCTAGCACT
ACCCATCCAAGCTCACCTACACCGCTTGCTCCATTAAATCAGCACCCCTG
CATTCATCCCCCCCCAACCCTTCTCCAAGAAAGATTTTTCAACAGGCGAC
CAAGTGATTTTCAAGCGTTCGAACCATATGGGTCAAAAAATATTTTGGAT
CGCCAACGTCGTGGTTGTAGTAGGCCTCCTATGCATGACAGGTGCGCCCT
GAAATGCACGAGATTCTCAAAGATCTTGTCAGCTCACCACCCCATCCATA
TGCTTTAACAGGATTCGGATTGGTATCGCTCAATAGTCGTACATTTTCCA
ATTCCTTCCCAATAAATCCTAATATTTCTTCCGTTCCTGAGGATTATGGG
CACCATCTCCATTTCATTGTACATACTGTAGGCGATTACGATCCAAACCG
CGATTGTGGTGGATGCGCCGTTCTCTGGGAGTTGTATTTCTCGCTAGTGG
CACACGGGTTCTCAGCTGCGAATAATTCAAAATCGATGGTTCCATCCAAC
ACCACCGTCGTTGTGATATATCCGGAAGTAATTAGAGGCGCGTTAGAGAT
CGGTGATATTCATGTGCGCTGGATTCTGGCTGCTGTTGGCATTAACGTCG
CAGAGAATATCACGGACTCCTGGAATCGCGACGATTTGGTATTCAACTAT
GCTACAAGCACTGGAAATAACATTCCTGTTTCCAACGTGCTACAAGTGGT
CGACACTCCAACCGACGGGGACGAAACTGACATCTCGGATGAGGATTTTA
ATAACAGGGATCGGTCAGGAATAGCGTGGATGATGAGAAAAGGGCCCAAG
TACCACAATGAAATTGAGTTCATACACGATATACCCGGCTATGAGACGAC
TAAGTTCGAGAGAGGTGCTGTTTCGAGTCTACGTAAGTTCGAATACTTCG
TCTCATATGATCCATATACATACTGGTCTTGGTTTGCTGCCATGCAGGGT
ACAGTGTCGATTGTGTATCCCCTTGCCAATGTATCAAAAGCGCAATGGGC
GCTTGGTACTTTTGTAGGATCATACCTACAGGACCAAAATCTCACTGAAA
TCCCGGGCGTTGCCTATGGATGGGAGGAAAGCGAGATCGAGTATGCTCGG
CGGACGATGCATAAGCTCAGGTCCTTCTTAGTGAACCTTCGCAAATGGGG
TGCTGAAGTCACCGTACCAAGATTCACAAGGGATTGTTTCCGTTTCAAAC
AGGGAGAGAGGAAATTCTTTGAAAGCGCATTGATTCTCGAAGATGTATAT
TCCCACTTATAGCTCTACGTCGCTTTCTCGAGGTTTGATAACTCAAAGAG
CATCACTACTACGGTCTCACGCCTTCCTATCGACGGCCTGTAGGTATTAG
CGAGACTATAGCCACTTTCCAGTGGGTGCTCTGATTGGCACTGAGAACTT
GATAGAAAACGTGTGCTAATAAATATGGGCAGTGGTCTGAGG back to topprotein sequence of NO03G05790.5 >NO03G05790.5-protein ID=NO03G05790.5-protein|Name=NO03G05790.5|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MHEILKDLVSSPPHPYALTGFGLVSLNSRTFSNSFPINPNISSVPEDYGH
HLHFIVHTVGDYDPNRDCGGCAVLWELYFSLVAHGFSAANNSKSMVPSNT
TVVVIYPEVIRGALEIGDIHVRWILAAVGINVAENITDSWNRDDLVFNYA
TSTGNNIPVSNVLQVVDTPTDGDETDISDEDFNNRDRSGIAWMMRKGPKY
HNEIEFIHDIPGYETTKFERGAVSSLRKFEYFVSYDPYTYWSWFAAMQGT
VSIVYPLANVSKAQWALGTFVGSYLQDQNLTEIPGVAYGWEESEIEYARR
TMHKLRSFLVNLRKWGAEVTVPRFTRDCFRFKQGERKFFESALILEDVYS
HL* back to topmRNA from alignment at chr3:1659810..1663968+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G05790.5 ID=NO03G05790.5|Name=NO03G05790.5|organism=Nannochloropsis oceanica|type=mRNA|length=4159bp|location=Sequence derived from alignment at chr3:1659810..1663968+ (Nannochloropsis oceanica)
CGATGCCTTATAGCCGCCGACATGCCGGTTTTGAATTCCTTCCCACAATA
GTTTCATGGCCACGAGTTCCCTCTCTTGCCTCAGGGATCTCTTTCCCTTC
CCAAGCGCACACGTGTTTCACCCATGTGTCCATGCCACTGTATTGCCCCG
CCCTTATGCTGCTTGCTTTGACTAGCCAAGCAAGTGCTTCGACCCAGCAG
TCCTTCTCTCATCATCACCCAACGGCTCTCGCTTTCTCCCTTCTTCCGGC
CTGCACATCATAACCTCTATCTGCCCTCCCGACGACCATTGCCAACTCCG
AGCATGGATATAAATGCAGCAAATGCTAGGTACGTGGTACCATCTGGTGG
GAGCATGAGGAGGCCGTGCTCGAGCCCCTCTTTTCTAGACAATAATTGCC
CCCCGTCGTCCACATTATCGCCCCTCACATACCGCGGCTGTCCAAGGGTC
CCACCCTGTTGCCCTACATCAAGATGCATGTAATGTGCTTTGCCCTCCTT
TTGCCAGTGAGGTCATGGCCCTGCCATCATCATCCCTGGATTTCCTACCA
CCCGTGCTCATGCCCTTCTACACCACTCCCTCGTCTCTCGAGGAATGGGT
GCGCCGTAGTCCTACCACCAACACCTGGGTCCGTTGGCCCCATGTCATGC
CATGTCATGGCCCTGGTTGTGTGCATCGGGCAGCCTCCTGCTGCATGGAA
GGCATGGCCTAACCTTCCCAGCCCTGCTGTTGCTTCCTTTTTTGCGTGCA
TTACAGCCGCACCCCGGGGAGCCCTGGACCTACAAGCACGCACCTTACCA
CACGACTAGGGACCTTTTGGGAATTTTCAGGGCGTCCAGGTGCGACAGGA
TGCACGTCTGCGAGAGCATAATTGCTGATTGTCCCCGTCCCTCTTTGTTT
ACCCCCCCTTCTTACCCCGTGCTCCTACTTCTCTTATCCTCTGAGGGGCT
GGGATGCATGATGAGCCATTCTTTCCGACCCTTTAGGTCACAGTCGAGAA
TGCTGGGGAGCTGGTCTTGGTGTGAGATGCCATCTTGTGCGTGTCCTCGT
GGCTCATGCTCCTTCCTCCCCTGTCCACCGTGCTTTCCTCCCTCTTACTC
GAGCTGCGTCACGACCTTCCGCCACTCCGTGTGTGTATGATGTTGCTATT
ACCTGTACTACCTGTACTCCTTGGATTTCTATTACCATGACAGGAAAGCC
AATTACGACAGTACGTCCTTCCCCCGTCACTCATCCTCCCCACCTCCCTC
CTTATCCCATCCTTTTTGCTCCAGCGCTGTCATGCCGCAAATTTTCCGCT
GCACTGACACCAACATCCACGACGAATGCAAGATTTTCTCTGTCAACAAG
CCTCAAAAAGACCGCCACCGCCAAAAGTCTTACTCGAACGAAGTGAACCT
GACGGTAGACGGCAGGGTCGTTGTCTTCAAATGCGACGACAACAGGAATT
TTCCCTGCGCATGCGTCATGGTGTTACTGTGTCAGGTCGTGGATTATTCC
GGAAGTTCTATACACGTAGTGGATGACATTAGGTTTGTGCCGGCCCTGGT
GCGGAGAGCCAATAAACGAGTGACTACGTAATATAGGCATTTATCCGAAT
TGTGTTTTGGACGTGTCCGGGCTATTTTTTAATCGATCTGCTTACGAACT
TTTTTCGAACCTTTCCGTCCTTTCTCACCCTCACTCGATTCAAATTATCC
ATCCGCATGGCTTTAAAAACCATATACAATGTAGAGTGCAGGAGGTTGGA
AAAAAGCCGGTTCTTCTTGAAGGGAAGCATTGCGTTTCCCAACGACTTGG
TCCAATCCATGTCAGAAGGTGGCAAGCACCGCAACAAAATGTCCGCATAC
GGCGTAATGGCCTGTCTCGGAAAGACTACCTTAATCGACGAATACAATAC
GGCATACAGCCTATCTGTATCGCCGCCTTTGGCTTCAAAGATGGACTCCA
TTTTCGCCCGAGCCGCTTAGGGGAAGCTTTTTGGCGCCATCCTATTCGTC
GGATTCAAGAAGAAGCAAAGAATTAGGCCAAATGTCATTGTAAATCGATA
ATAAACAACATACACGGATGAAGGGGATCGTCCACACTCAGATCTGGCCA
CCATTTGTAAGATTCACAAGCTGCAGCAACCCACTCATATGACAGAACTA
CTATTGGTCAAGCCAGTGTGTTGTGAGACTGACCGTAATAAATATTGTGT
TTTTAAAGTTGGCATTATGGGCCTGACAATCAGCATCATTTTCCTGGGGG
ATGTTTGGCTGCTTCGTTGAAGTAACCTCAGCCATGGGCCTCCAGTGCTA
TCATATAGGCTGTTTAAAACCTTGTTCTTCATAAAGTATTTGCATGAGAT
TTGTGCTTTCATGTAATACATTGTGTAGATGAGCCATCGGCATGATGAAT
GACGACACAAATCCCATTCTACGGCCGAAATGTCAAGATACACACTCCCT
ACCAACTCGGGCCTAATTTTGGCCGTGTCGCGCACTCGCAGCAACAATTG
AATCTTATCCGTTGCTTGGCTGTCGTGGGTTTCAAGCCCCTCGTCGATCA
CGGCATACCGGCAGGTTGGTGGTAAAGTCTCTGCGATCCAAAGGATGTTC
TCCTCCACACCACCGCGTTATCGCTAGGAGCGCTGGGAGTGGGGTACATG
TACTATCTGAACTATTTTTTAAAAAGAGCGAACGATATTCCAAACTTCAA
GATCGAGCTCTAGCACTACCCATCCAAGCTCACCTACACCGCTTGCTCCA
TTAAATCAGCACCCCTGCATTCATCCCCCCCCAACCCTTCTCCAAGAAAG
ATTTTTCAACAGGCGACCAAGTGATTTTCAAGCGTTCGAACCATATGGGT
CAAAAAATATTTTGGATCGCCAACGTCGTGGTTGTAGTAGGCCTCCTATG
CATGACAGGTGCGCCCTGAAATGCACGAGATTCTCAAAGATCTTGTCAGC
TCACCACCCCATCCATATGCTTTAACAGGATTCGGATTGGTATCGCTCAA
TAGTCGTACATTTTCCAATTCCTTCCCAATAAATCCTAATATTTCTTCCG
TTCCTGAGGATTATGGGCACCATCTCCATTTCATTGTACATACTGTAGGC
GATTACGATCCAAACCGCGATTGTGGTGGATGCGCCGTTCTCTGGGAGTT
GTATTTCTCGCTAGTGGCACACGGGTTCTCAGCTGCGAATAATTCAAAAT
CGATGGTTCCATCCAACACCACCGTCGTTGTGATATATCCGGAAGTAATT
AGAGGCGCGTTAGAGATCGGTGATATTCATGTGCGCTGGATTCTGGCTGC
TGTTGGCATTAACGTCGCAGAGAATATCACGGACTCCTGGAATCGCGACG
ATTTGGTATTCAACTATGCTACAAGCACTGGAAATAACATTCCTGTTTCC
AACGTGCTACAAGTGGTCGACACTCCAACCGACGGGGACGAAACTGACAT
CTCGGATGAGGATTTTAATAACAGGGATCGGTCAGGAATAGCGTGGATGA
TGAGAAAAGGGCCCAAGTACCACAATGAAATTGAGTTCATACACGATATA
CCCGGCTATGAGACGACTAAGTTCGAGAGAGGTGCTGTTTCGAGTCTACG
TAAGTTCGAATACTTCGTCTCATATGATCCATATACATACTGGTCTTGGT
TTGCTGCCATGCAGGGTACAGTGTCGATTGTGTATCCCCTTGCCAATGTA
TCAAAAGCGCAATGGGCGCTTGGTACTTTTGTAGGATCATACCTACAGGA
CCAAAATCTCACTGAAATCCCGGGCGTTGCCTATGGATGGGAGGAAAGCG
AGATCGAGTATGCTCGGCGGACGATGCATAAGCTCAGGTCCTTCTTAGTG
AACCTTCGCAAATGGGGTGCTGAAGTCACCGTACCAAGATTCACAAGGGA
TTGTTTCCGTTTCAAACAGGGAGAGAGGAAATTCTTTGAAAGCGCATTGA
TTCTCGAAGATGTATATTCCCACTTATAGCTCTACGTCGCTTTCTCGAGG
TTTGATAACTCAAAGAGCATCACTACTACGGTCTCACGCCTTCCTATCGA
CGGCCTGTAGGTATTAGCGAGACTATAGCCACTTTCCAGTGGGTGCTCTG
ATTGGCACTGAGAACTTGATAGAAAACGTGTGCTAATAAATATGGGCAGT
GGTCTGAGG back to topCoding sequence (CDS) from alignment at chr3:1659810..1663968+ >NO03G05790.5 ID=NO03G05790.5|Name=NO03G05790.5|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at chr3:1659810..1663968+ (Nannochloropsis oceanica)
ATGCACGAGATTCTCAAAGATCTTGTCAGCTCACCACCCCATCCATATGC
TTTAACAGGATTCGGATTGGTATCGCTCAATAGTCGTACATTTTCCAATT
CCTTCCCAATAAATCCTAATATTTCTTCCGTTCCTGAGGATTATGGGCAC
CATCTCCATTTCATTGTACATACTGTAGGCGATTACGATCCAAACCGCGA
TTGTGGTGGATGCGCCGTTCTCTGGGAGTTGTATTTCTCGCTAGTGGCAC
ACGGGTTCTCAGCTGCGAATAATTCAAAATCGATGGTTCCATCCAACACC
ACCGTCGTTGTGATATATCCGGAAGTAATTAGAGGCGCGTTAGAGATCGG
TGATATTCATGTGCGCTGGATTCTGGCTGCTGTTGGCATTAACGTCGCAG
AGAATATCACGGACTCCTGGAATCGCGACGATTTGGTATTCAACTATGCT
ACAAGCACTGGAAATAACATTCCTGTTTCCAACGTGCTACAAGTGGTCGA
CACTCCAACCGACGGGGACGAAACTGACATCTCGGATGAGGATTTTAATA
ACAGGGATCGGTCAGGAATAGCGTGGATGATGAGAAAAGGGCCCAAGTAC
CACAATGAAATTGAGTTCATACACGATATACCCGGCTATGAGACGACTAA
GTTCGAGAGAGGTGCTGTTTCGAGTCTACGTAAGTTCGAATACTTCGTCT
CATATGATCCATATACATACTGGTCTTGGTTTGCTGCCATGCAGGGTACA
GTGTCGATTGTGTATCCCCTTGCCAATGTATCAAAAGCGCAATGGGCGCT
TGGTACTTTTGTAGGATCATACCTACAGGACCAAAATCTCACTGAAATCC
CGGGCGTTGCCTATGGATGGGAGGAAAGCGAGATCGAGTATGCTCGGCGG
ACGATGCATAAGCTCAGGTCCTTCTTAGTGAACCTTCGCAAATGGGGTGC
TGAAGTCACCGTACCAAGATTCACAAGGGATTGTTTCCGTTTCAAACAGG
GAGAGAGGAAATTCTTTGAAAGCGCATTGATTCTCGAAGATGTATATTCC
CACTTATAG back to top
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