NO03G05790.4, NO03G05790.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05790.4
Unique NameNO03G05790.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3144
Alignment locationchr3:1659810..1663968 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1659810..1663968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05790.4 vs.
Match: ARF12494.1 (hypothetical protein Klosneuvirus_6_56 [Klosneuvirus KNV1])

HSP 1 Score: 117.1 bits (292), Expect = 1.100e-22
Identity = 77/238 (32.35%), Postives = 121/238 (50.84%), Query Frame = 0 
Query:   94 SKSMVPSNTTVVVIYPEVIRGALEIGDIHVRWILAAVGINVAENITDSWNRDDLVFNYATSTGNNIPVSNVLQVVDTPTDGDETDISDEDFNNRDRSGIAWMMRKGPKYHNEIEFIHDIPGYETTKFE-RGAVSSLRKFEYFVSYDPYTYWSWFAAMQGTVSIVYPLANVSKAQW--ALGTFVGSYLQDQNLTEIPGVAYGWEESEIEYARRTMHKLRSFLVNLRKWGAEVTVPRFTR 329
            SKS + ++   +VIYPE+I+G        VRW+L  VGI+  + I  +W +DDLVF+Y+T      P   + Q+     + +  + +  +     RSG  +M+RKG ++H  I+ +H        K      +    + EYF  YDPY+++   AA+ G + I+YPL N +K  W    G F     Q  NL+   G+AYG E  EIEYA+ T+H       +   +G E T+ +F +
Sbjct:   73 SKSQIINDENTIVIYPEIIKGNPLNAKYVVRWLLCDVGIHTDKEIYKTWGKDDLVFHYSTFNMKYNP-EKITQLYTIWINPNVKNTNPTE----QRSGSCYMIRKGNQFHKTIKNMHPSDSILLDKNSLEDNIKIFNEKEYFYCYDPYSFYDSIAALCGCIPIIYPLENSNKLDWLKTKGLFQVYLNQRDNLS---GIAYGNEPIEIEYAKNTLHLASQEKQDALNFGLE-TIKKFVK 301
The following BLAST results are available for this feature:
BLAST of NO03G05790.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
ARF12494.11.100e-2232.35hypothetical protein Klosneuvirus_6_56 [Klosneuvir... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05790NO03G05790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05790.4NO03G05790.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05790.4.cds1NO03G05790.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05790.4.cds2NO03G05790.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05790.4 ID=NO03G05790.4|Name=NO03G05790.4|organism=Nannochloropsis oceanica|type=mRNA|length=3144bp
CGATGCCTTATAGCCGCCGACATGCCGGTTTTGAATTCCTTCCCACAATA
GTTTCATGGCCACGAGTTCCCTCTCTTGCCTCAGGGATCTCTTTCCCTTC
CCAAGCGCACACGTGTTTCACCCATGTGTCCATGCCACTGTATTGCCCCG
CCCTTATGCTGCTTGCTTTGACTAGCCAAGCAAGTGCTTCGACCCAGCAG
TCCTTCTCTCATCATCACCCAACGGCTCTCGCTTTCTCCCTTCTTCCGGC
CTGCACATCATAACCTCTATCTGCCCTCCCGACGACCATTGCCAACTCCG
AGCATGGATATAAATGCAGCAAATGCTAGCGCTGTCATGCCGCAAATTTT
CCGCTGCACTGACACCAACATCCACGACGAATGCAAGATTTTCTCTGTCA
ACAAGCCTCAAAAAGACCGCCACCGCCAAAAGTCTTACTCGAACGAAGTG
AACCTGACGGTAGACGGCAGGGTCGTTGTCTTCAAATGCGACGACAACAG
GAATTTTCCCTGCGCATGCGTCATGGTGTTACTGTGTCAGGTCGTGGATT
ATTCCGGAAGTTCTATACACGTAGTGGATGACATTAGGTTTGTGCCGGCC
CTGGTGCGGAGAGCCAATAAACGAGTGACTACGTAATATAGGCATTTATC
CGAATTGTGTTTTGGACGTGTCCGGGCTATTTTTTAATCGATCTGCTTAC
GAACTTTTTTCGAACCTTTCCGTCCTTTCTCACCCTCACTCGATTCAAAT
TATCCATCCGCATGGCTTTAAAAACCATATACAATGTAGAGTGCAGGAGG
TTGGAAAAAAGCCGGTTCTTCTTGAAGGGAAGCATTGCGTTTCCCAACGA
CTTGGTCCAATCCATGTCAGAAGGTGGCAAGCACCGCAACAAAATGTCCG
CATACGGCGTAATGGCCTGTCTCGGAAAGACTACCTTAATCGACGAATAC
AATACGGCATACAGCCTATCTGTATCGCCGCCTTTGGCTTCAAAGATGGA
CTCCATTTTCGCCCGAGCCGCTTAGGGGAAGCTTTTTGGCGCCATCCTAT
TCGTCGGATTCAAGAAGAAGCAAAGAATTAGGCCAAATGTCATTGTAAAT
CGATAATAAACAACATACACGGATGAAGGGGATCGTCCACACTCAGATCT
GGCCACCATTTGTAAGATTCACAAGCTGCAGCAACCCACTCATATGACAG
AACTACTATTGGTCAAGCCAGTGTGTTGTGAGACTGACCGTAATAAATAT
TGTGTTTTTAAAGTTGGCATTATGGGCCTGACAATCAGCATCATTTTCCT
GGGGGATGTTTGGCTGCTTCGTTGAAGTAACCTCAGCCATGGGCCTCCAG
TGCTATCATATAGGCTGTTTAAAACCTTGTTCTTCATAAAGTATTTGCAT
GAGATTTGTGCTTTCATGTAATACATTGTGTAGATGAGCCATCGGCATGA
TGAATGACGACACAAATCCCATTCTACGGCCGAAATGTCAAGATACACAC
TCCCTACCAACTCGGGCCTAATTTTGGCCGTGTCGCGCACTCGCAGCAAC
AATTGAATCTTATCCGTTGCTTGGCTGTCGTGGGTTTCAAGCCCCTCGTC
GATCACGGCATACCGGCAGGTTGGTGGTAAAGTCTCTGCGATCCAAAGGA
TGTTCTCCTCCACACCACCGCGTTATCGCTAGGAGCGCTGGGAGTGGGGT
ACATGTACTATCTGAACTATTTTTTAAAAAGAGCGAACGATATTCCAAAC
TTCAAGATCGAGCTCTAGCACTACCCATCCAAGCTCACCTACACCGCTTG
CTCCATTAAATCAGCACCCCTGCATTCATCCCCCCCCAACCCTTCTCCAA
GAAAGATTTTTCAACAGGCGACCAAGTGATTTTCAAGCGTTCGAACCATA
TGGGTCAAAAAATATTTTGGATCGCCAACGTCGTGGTTGTAGTAGGCCTC
CTATGCATGACAGGATTCGGATTGGTATCGCTCAATAGTCGTACATTTTC
CAATTCCTTCCCAATAAATCCTAATATTTCTTCCGTTCCTGAGGATTATG
GGCACCATCTCCATTTCATTGTACATACTGTAGGCGATTACGATCCAAAC
CGCGATTGTGGTGGATGCGCCGTTCTCTGGGAGTTGTATTTCTCGCTAGT
GGCACACGGGTTCTCAGCTGCGAATAATTCAAAATCGATGGTTCCATCCA
ACACCACCGTCGTTGTGATATATCCGGAAGTAATTAGAGGCGCGTTAGAG
ATCGGTGATATTCATGTGCGCTGGATTCTGGCTGCTGTTGGCATTAACGT
CGCAGAGAATATCACGGACTCCTGGAATCGCGACGATTTGGTATTCAACT
ATGCTACAAGCACTGGAAATAACATTCCTGTTTCCAACGTGCTACAAGTG
GTCGACACTCCAACCGACGGGGACGAAACTGACATCTCGGATGAGGATTT
TAATAACAGGGATCGGTCAGGAATAGCGTGGATGATGAGAAAAGGGCCCA
AGTACCACAATGAAATTGAGTTCATACACGATATACCCGGCTATGAGACG
ACTAAGTTCGAGAGAGGTGCTGTTTCGAGTCTACGTAAGTTCGAATACTT
CGTCTCATATGATCCATATACATACTGGTCTTGGTTTGCTGCCATGCAGG
GTACAGTGTCGATTGTGTATCCCCTTGCCAATGTATCAAAAGCGCAATGG
GCGCTTGGTACTTTTGTAGGATCATACCTACAGGACCAAAATCTCACTGA
AATCCCGGGCGTTGCCTATGGATGGGAGGAAAGCGAGATCGAGTATGCTC
GGCGGACGATGCATAAGCTCAGGTCCTTCTTAGTGAACCTTCGCAAATGG
GGTGCTGAAGTCACCGTACCAAGATTCACAAGGGATTGTTTCCGTTTCAA
ACAGGGAGAGAGGAAATTCTTTGAAAGCGCATTGATTCTCGAAGATGTAT
ATTCCCACTTATAGCTCTACGTCGCTTTCTCGAGGTTTGATAACTCAAAG
AGCATCACTACTACGGTCTCACGCCTTCCTATCGACGGCCTGTAGGTATT
AGCGAGACTATAGCCACTTTCCAGTGGGTGCTCTGATTGGCACTGAGAAC
TTGATAGAAAACGTGTGCTAATAAATATGGGCAGTGGTCTGAGG
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protein sequence of NO03G05790.4

>NO03G05790.4-protein ID=NO03G05790.4-protein|Name=NO03G05790.4|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MGQKIFWIANVVVVVGLLCMTGFGLVSLNSRTFSNSFPINPNISSVPEDY
GHHLHFIVHTVGDYDPNRDCGGCAVLWELYFSLVAHGFSAANNSKSMVPS
NTTVVVIYPEVIRGALEIGDIHVRWILAAVGINVAENITDSWNRDDLVFN
YATSTGNNIPVSNVLQVVDTPTDGDETDISDEDFNNRDRSGIAWMMRKGP
KYHNEIEFIHDIPGYETTKFERGAVSSLRKFEYFVSYDPYTYWSWFAAMQ
GTVSIVYPLANVSKAQWALGTFVGSYLQDQNLTEIPGVAYGWEESEIEYA
RRTMHKLRSFLVNLRKWGAEVTVPRFTRDCFRFKQGERKFFESALILEDV
YSHL*
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mRNA from alignment at chr3:1659810..1663968+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05790.4 ID=NO03G05790.4|Name=NO03G05790.4|organism=Nannochloropsis oceanica|type=mRNA|length=4159bp|location=Sequence derived from alignment at chr3:1659810..1663968+ (Nannochloropsis oceanica)
CGATGCCTTATAGCCGCCGACATGCCGGTTTTGAATTCCTTCCCACAATA
GTTTCATGGCCACGAGTTCCCTCTCTTGCCTCAGGGATCTCTTTCCCTTC
CCAAGCGCACACGTGTTTCACCCATGTGTCCATGCCACTGTATTGCCCCG
CCCTTATGCTGCTTGCTTTGACTAGCCAAGCAAGTGCTTCGACCCAGCAG
TCCTTCTCTCATCATCACCCAACGGCTCTCGCTTTCTCCCTTCTTCCGGC
CTGCACATCATAACCTCTATCTGCCCTCCCGACGACCATTGCCAACTCCG
AGCATGGATATAAATGCAGCAAATGCTAGGTACGTGGTACCATCTGGTGG
GAGCATGAGGAGGCCGTGCTCGAGCCCCTCTTTTCTAGACAATAATTGCC
CCCCGTCGTCCACATTATCGCCCCTCACATACCGCGGCTGTCCAAGGGTC
CCACCCTGTTGCCCTACATCAAGATGCATGTAATGTGCTTTGCCCTCCTT
TTGCCAGTGAGGTCATGGCCCTGCCATCATCATCCCTGGATTTCCTACCA
CCCGTGCTCATGCCCTTCTACACCACTCCCTCGTCTCTCGAGGAATGGGT
GCGCCGTAGTCCTACCACCAACACCTGGGTCCGTTGGCCCCATGTCATGC
CATGTCATGGCCCTGGTTGTGTGCATCGGGCAGCCTCCTGCTGCATGGAA
GGCATGGCCTAACCTTCCCAGCCCTGCTGTTGCTTCCTTTTTTGCGTGCA
TTACAGCCGCACCCCGGGGAGCCCTGGACCTACAAGCACGCACCTTACCA
CACGACTAGGGACCTTTTGGGAATTTTCAGGGCGTCCAGGTGCGACAGGA
TGCACGTCTGCGAGAGCATAATTGCTGATTGTCCCCGTCCCTCTTTGTTT
ACCCCCCCTTCTTACCCCGTGCTCCTACTTCTCTTATCCTCTGAGGGGCT
GGGATGCATGATGAGCCATTCTTTCCGACCCTTTAGGTCACAGTCGAGAA
TGCTGGGGAGCTGGTCTTGGTGTGAGATGCCATCTTGTGCGTGTCCTCGT
GGCTCATGCTCCTTCCTCCCCTGTCCACCGTGCTTTCCTCCCTCTTACTC
GAGCTGCGTCACGACCTTCCGCCACTCCGTGTGTGTATGATGTTGCTATT
ACCTGTACTACCTGTACTCCTTGGATTTCTATTACCATGACAGGAAAGCC
AATTACGACAGTACGTCCTTCCCCCGTCACTCATCCTCCCCACCTCCCTC
CTTATCCCATCCTTTTTGCTCCAGCGCTGTCATGCCGCAAATTTTCCGCT
GCACTGACACCAACATCCACGACGAATGCAAGATTTTCTCTGTCAACAAG
CCTCAAAAAGACCGCCACCGCCAAAAGTCTTACTCGAACGAAGTGAACCT
GACGGTAGACGGCAGGGTCGTTGTCTTCAAATGCGACGACAACAGGAATT
TTCCCTGCGCATGCGTCATGGTGTTACTGTGTCAGGTCGTGGATTATTCC
GGAAGTTCTATACACGTAGTGGATGACATTAGGTTTGTGCCGGCCCTGGT
GCGGAGAGCCAATAAACGAGTGACTACGTAATATAGGCATTTATCCGAAT
TGTGTTTTGGACGTGTCCGGGCTATTTTTTAATCGATCTGCTTACGAACT
TTTTTCGAACCTTTCCGTCCTTTCTCACCCTCACTCGATTCAAATTATCC
ATCCGCATGGCTTTAAAAACCATATACAATGTAGAGTGCAGGAGGTTGGA
AAAAAGCCGGTTCTTCTTGAAGGGAAGCATTGCGTTTCCCAACGACTTGG
TCCAATCCATGTCAGAAGGTGGCAAGCACCGCAACAAAATGTCCGCATAC
GGCGTAATGGCCTGTCTCGGAAAGACTACCTTAATCGACGAATACAATAC
GGCATACAGCCTATCTGTATCGCCGCCTTTGGCTTCAAAGATGGACTCCA
TTTTCGCCCGAGCCGCTTAGGGGAAGCTTTTTGGCGCCATCCTATTCGTC
GGATTCAAGAAGAAGCAAAGAATTAGGCCAAATGTCATTGTAAATCGATA
ATAAACAACATACACGGATGAAGGGGATCGTCCACACTCAGATCTGGCCA
CCATTTGTAAGATTCACAAGCTGCAGCAACCCACTCATATGACAGAACTA
CTATTGGTCAAGCCAGTGTGTTGTGAGACTGACCGTAATAAATATTGTGT
TTTTAAAGTTGGCATTATGGGCCTGACAATCAGCATCATTTTCCTGGGGG
ATGTTTGGCTGCTTCGTTGAAGTAACCTCAGCCATGGGCCTCCAGTGCTA
TCATATAGGCTGTTTAAAACCTTGTTCTTCATAAAGTATTTGCATGAGAT
TTGTGCTTTCATGTAATACATTGTGTAGATGAGCCATCGGCATGATGAAT
GACGACACAAATCCCATTCTACGGCCGAAATGTCAAGATACACACTCCCT
ACCAACTCGGGCCTAATTTTGGCCGTGTCGCGCACTCGCAGCAACAATTG
AATCTTATCCGTTGCTTGGCTGTCGTGGGTTTCAAGCCCCTCGTCGATCA
CGGCATACCGGCAGGTTGGTGGTAAAGTCTCTGCGATCCAAAGGATGTTC
TCCTCCACACCACCGCGTTATCGCTAGGAGCGCTGGGAGTGGGGTACATG
TACTATCTGAACTATTTTTTAAAAAGAGCGAACGATATTCCAAACTTCAA
GATCGAGCTCTAGCACTACCCATCCAAGCTCACCTACACCGCTTGCTCCA
TTAAATCAGCACCCCTGCATTCATCCCCCCCCAACCCTTCTCCAAGAAAG
ATTTTTCAACAGGCGACCAAGTGATTTTCAAGCGTTCGAACCATATGGGT
CAAAAAATATTTTGGATCGCCAACGTCGTGGTTGTAGTAGGCCTCCTATG
CATGACAGGTGCGCCCTGAAATGCACGAGATTCTCAAAGATCTTGTCAGC
TCACCACCCCATCCATATGCTTTAACAGGATTCGGATTGGTATCGCTCAA
TAGTCGTACATTTTCCAATTCCTTCCCAATAAATCCTAATATTTCTTCCG
TTCCTGAGGATTATGGGCACCATCTCCATTTCATTGTACATACTGTAGGC
GATTACGATCCAAACCGCGATTGTGGTGGATGCGCCGTTCTCTGGGAGTT
GTATTTCTCGCTAGTGGCACACGGGTTCTCAGCTGCGAATAATTCAAAAT
CGATGGTTCCATCCAACACCACCGTCGTTGTGATATATCCGGAAGTAATT
AGAGGCGCGTTAGAGATCGGTGATATTCATGTGCGCTGGATTCTGGCTGC
TGTTGGCATTAACGTCGCAGAGAATATCACGGACTCCTGGAATCGCGACG
ATTTGGTATTCAACTATGCTACAAGCACTGGAAATAACATTCCTGTTTCC
AACGTGCTACAAGTGGTCGACACTCCAACCGACGGGGACGAAACTGACAT
CTCGGATGAGGATTTTAATAACAGGGATCGGTCAGGAATAGCGTGGATGA
TGAGAAAAGGGCCCAAGTACCACAATGAAATTGAGTTCATACACGATATA
CCCGGCTATGAGACGACTAAGTTCGAGAGAGGTGCTGTTTCGAGTCTACG
TAAGTTCGAATACTTCGTCTCATATGATCCATATACATACTGGTCTTGGT
TTGCTGCCATGCAGGGTACAGTGTCGATTGTGTATCCCCTTGCCAATGTA
TCAAAAGCGCAATGGGCGCTTGGTACTTTTGTAGGATCATACCTACAGGA
CCAAAATCTCACTGAAATCCCGGGCGTTGCCTATGGATGGGAGGAAAGCG
AGATCGAGTATGCTCGGCGGACGATGCATAAGCTCAGGTCCTTCTTAGTG
AACCTTCGCAAATGGGGTGCTGAAGTCACCGTACCAAGATTCACAAGGGA
TTGTTTCCGTTTCAAACAGGGAGAGAGGAAATTCTTTGAAAGCGCATTGA
TTCTCGAAGATGTATATTCCCACTTATAGCTCTACGTCGCTTTCTCGAGG
TTTGATAACTCAAAGAGCATCACTACTACGGTCTCACGCCTTCCTATCGA
CGGCCTGTAGGTATTAGCGAGACTATAGCCACTTTCCAGTGGGTGCTCTG
ATTGGCACTGAGAACTTGATAGAAAACGTGTGCTAATAAATATGGGCAGT
GGTCTGAGG
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Coding sequence (CDS) from alignment at chr3:1659810..1663968+

>NO03G05790.4 ID=NO03G05790.4|Name=NO03G05790.4|organism=Nannochloropsis oceanica|type=CDS|length=1065bp|location=Sequence derived from alignment at chr3:1659810..1663968+ (Nannochloropsis oceanica)
ATGGGTCAAAAAATATTTTGGATCGCCAACGTCGTGGTTGTAGTAGGCCT
CCTATGCATGACAGGATTCGGATTGGTATCGCTCAATAGTCGTACATTTT
CCAATTCCTTCCCAATAAATCCTAATATTTCTTCCGTTCCTGAGGATTAT
GGGCACCATCTCCATTTCATTGTACATACTGTAGGCGATTACGATCCAAA
CCGCGATTGTGGTGGATGCGCCGTTCTCTGGGAGTTGTATTTCTCGCTAG
TGGCACACGGGTTCTCAGCTGCGAATAATTCAAAATCGATGGTTCCATCC
AACACCACCGTCGTTGTGATATATCCGGAAGTAATTAGAGGCGCGTTAGA
GATCGGTGATATTCATGTGCGCTGGATTCTGGCTGCTGTTGGCATTAACG
TCGCAGAGAATATCACGGACTCCTGGAATCGCGACGATTTGGTATTCAAC
TATGCTACAAGCACTGGAAATAACATTCCTGTTTCCAACGTGCTACAAGT
GGTCGACACTCCAACCGACGGGGACGAAACTGACATCTCGGATGAGGATT
TTAATAACAGGGATCGGTCAGGAATAGCGTGGATGATGAGAAAAGGGCCC
AAGTACCACAATGAAATTGAGTTCATACACGATATACCCGGCTATGAGAC
GACTAAGTTCGAGAGAGGTGCTGTTTCGAGTCTACGTAAGTTCGAATACT
TCGTCTCATATGATCCATATACATACTGGTCTTGGTTTGCTGCCATGCAG
GGTACAGTGTCGATTGTGTATCCCCTTGCCAATGTATCAAAAGCGCAATG
GGCGCTTGGTACTTTTGTAGGATCATACCTACAGGACCAAAATCTCACTG
AAATCCCGGGCGTTGCCTATGGATGGGAGGAAAGCGAGATCGAGTATGCT
CGGCGGACGATGCATAAGCTCAGGTCCTTCTTAGTGAACCTTCGCAAATG
GGGTGCTGAAGTCACCGTACCAAGATTCACAAGGGATTGTTTCCGTTTCA
AACAGGGAGAGAGGAAATTCTTTGAAAGCGCATTGATTCTCGAAGATGTA
TATTCCCACTTATAG
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Synonyms
Publications