NO03G05670.1, NO03G05670.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G05670.1
Unique Name	NO03G05670.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1881
Alignment location	chr3:1632095..1635444 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:1632095..1635444 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO03G05670.1 vs.
Match: EWM30038.1 (serine protease family [Nannochloropsis gaditana])

HSP 1 Score: 740.3 bits (1910), Expect = 3.800e-210
Identity = 327/471 (69.43%), Postives = 401/471 (85.14%), Query Frame = 0

Query:   26 LLLLLGVVAMVSSSILDRKSNAWHARFPQRGWLWENREYIGRLVGEDVETKLCDPDVNSQAGYFKITGSKDKNYFYWFFESRSSPSTDPFIIWLSGGPGCSSTLALLMENGPCSVNANGNDTIPNPNSWTNHANMMWIDQPAGVGFSYQSSADSVTDSEDQVAEDIYQFLQSFFTANPQFTNNDFYVFGESYGGHFVPAVGHKIFMENQRNKGRAIMINLKGLGIGNGLTDPELQYQFYSKYARNNTYGIELVSAEDAQKMEAAIPRCVSLIKSCQSWGGKAPCQLARLFCSKYILEYFPVGRRNIYDIRRDCSNPPICYNFDPIEKWLNIPSIQSALHVRKKPGNDMGRWRVCSDDVSIQFSGDVMLSFDKMLVPLLESGIKVLNYAGDADFICNHMGVEAWSDALVWKGQEAFQATTGNVWITEDGKEGGIVRSAEGFTFLRMFESGHMCPFDQPAVSAEMVAAWTGVG 497
            + LLL    ++SS+ ++R    W A FP RGW+WE++ +IG L G+DVETKLCDPDVNSQAGYFKI+GSKDKNYFYWFFESR++P TDP IIWL+GGPGCSS LALL ENGPC+VN +G +T  NP SWT HANM+WIDQPAGVGFSY    D VTD+ED+VAED+Y FLQSF TANPQ+  N+FYVFGESYGGHFVPAV HKIF+ N +N G+AI INL+GLGIGNG+TDPELQYQ+Y+ YA +N+YGI L+SAE+ + +++A+P+CVSLIKSCQSWGG+  C+LA LFC+++IL++FP+   N+YDIR++C+ PP+CY+F P+EKWLN PS+Q ALHVRK+   D  RW+VCSD V++QFSGD+M S+DK+L+PLLESG+KVLNYAGDADFICN++G+EAWSDALVW GQ+AFQAT  + W+TE G EGG+VRSAEGFTFLRMF+SGHMCP DQPAVSAEMVAAWTG G
Sbjct:   49 IFLLLRASVVISSAAMERNGRPWQAFFPTRGWVWEDKAFIGELAGQDVETKLCDPDVNSQAGYFKISGSKDKNYFYWFFESRATPETDPLIIWLTGGPGCSSILALLYENGPCTVNDDGKNTTLNPYSWTKHANMLWIDQPAGVGFSYDGPGDKVTDTEDEVAEDLYHFLQSFLTANPQYIKNEFYVFGESYGGHFVPAVAHKIFVANIQNSGQAIPINLQGLGIGNGMTDPELQYQYYADYAVSNSYGINLISAENVEVVDSAVPQCVSLIKSCQSWGGETACRLAWLFCTQHILKHFPLEEVNVYDIRKNCTTPPLCYDFQPVEKWLNTPSVQEALHVRKRGFKDNSRWKVCSDKVNLQFSGDMMRSYDKLLIPLLESGVKVLNYAGDADFICNYLGIEAWSDALVWSGQKAFQATNRSAWMTEGGIEGGLVRSAEGFTFLRMFDSGHMCPLDQPAVSAEMVAAWTGRG 519

The following BLAST results are available for this feature:

BLAST of NO03G05670.1 vs.

BLAST of NO03G05670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30038.1	3.800e-210	69.43	serine protease family [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G05670	NO03G05670	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G05670.1	NO03G05670.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G05670.1.cds1	NO03G05670.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05670.1.cds2	NO03G05670.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05670.1.cds3	NO03G05670.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05670.1.cds4	NO03G05670.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05670.1.cds5	NO03G05670.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05670.1.cds6	NO03G05670.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05670.1.cds7	NO03G05670.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05670.1.cds8	NO03G05670.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05670.1.cds9	NO03G05670.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05670.1.cds10	NO03G05670.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G05670.1.cds11	NO03G05670.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:1632095..1635444+
coding sequence from alignment at chr3:1632095..1635444+

mRNA sequence

>NO03G05670.1 ID=NO03G05670.1|Name=NO03G05670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1881bp
ACAGGCGGCTCCAGGCGAGAGCGTTGGCAGGAGCGAGTAGGAGGCAGATC
GCCGCCCTCCGTCGCCCTTCCTCCGTATCGCAGCCATGGAAACTGCACCA
AGAGCACTACGACCTGTTCTAATCTCCGTCTCCTCCTCCAGGCCTACTAT
GCCTCTTCTTCTTCTCTTGCTTCTTGGCGTGGTAGCCATGGTCTCGTCGT
CGATATTGGACAGAAAGAGCAATGCATGGCACGCGCGGTTTCCGCAACGG
GGCTGGCTTTGGGAGAACAGAGAATATATTGGCAGGCTGGTTGGAGAGGA
TGTCGAGACGAAACTGTGCGATCCGGACGTCAACTCGCAAGCAGGCTATT
TCAAAATCACCGGAAGCAAGGACAAAAACTACTTCTACTGGTTCTTCGAG
TCCCGCTCAAGCCCCTCGACAGATCCTTTCATTATCTGGCTCTCGGGCGG
TCCAGGTTGCTCATCCACCCTGGCCCTTTTAATGGAGAACGGCCCCTGCA
GCGTCAACGCCAACGGGAACGACACCATCCCTAACCCCAACTCCTGGACC
AATCACGCCAACATGATGTGGATCGATCAGCCCGCGGGCGTCGGATTCTC
CTATCAATCTTCGGCGGACAGCGTCACAGATTCGGAGGATCAGGTCGCCG
AGGACATATATCAGTTCCTCCAATCCTTCTTCACGGCCAACCCTCAGTTC
ACGAACAACGATTTTTATGTCTTCGGGGAGAGTTATGGCGGGCACTTTGT
CCCGGCGGTGGGGCACAAGATTTTCATGGAAAACCAACGGAACAAAGGCC
GCGCTATCATGATCAATTTGAAGGGGCTTGGCATCGGCAACGGGCTCACT
GACCCGGAGCTCCAGTATCAATTCTACTCGAAGTACGCCCGCAACAACAC
CTACGGCATCGAATTAGTGTCGGCCGAGGATGCGCAGAAAATGGAAGCCG
CCATTCCCCGGTGCGTGTCTCTGATCAAATCCTGCCAGTCCTGGGGAGGC
AAGGCGCCCTGTCAGCTGGCCCGCCTTTTTTGCAGCAAGTACATCTTGGA
GTACTTCCCCGTAGGCCGACGCAACATCTACGACATCCGGCGAGACTGTT
CCAACCCTCCCATCTGCTATAATTTCGACCCCATCGAGAAGTGGCTCAAC
ATACCTAGCATTCAGTCTGCTCTGCATGTGCGGAAGAAGCCAGGGAACGA
CATGGGCCGGTGGCGTGTGTGTAGCGACGATGTGAGCATCCAGTTTTCCG
GGGACGTGATGCTCAGCTTTGACAAGATGCTTGTTCCCTTGCTCGAGTCA
GGCATCAAGGTCTTGAATTATGCCGGGGACGCGGACTTCATCTGCAATCA
CATGGGGGTGGAGGCCTGGAGCGATGCCCTGGTTTGGAAGGGGCAAGAGG
CATTCCAAGCCACCACAGGCAACGTATGGATAACCGAGGACGGAAAAGAG
GGAGGAATAGTGCGGTCTGCGGAGGGATTCACGTTTTTGAGGATGTTTGA
GAGTGGCCACATGTGTCCTTTTGACCAGCCAGCGGTGAGTGCTGAGATGG
TGGCGGCCTGGACGGGCGTGGGGGGGGGGGGGTAAAAGATAGGTGGGAGG
CGGTGGTGCTGGCACCTGAGAAAGAAGGGAAAGAGGAAGAGGTCGGTGGA
TTGGAAGGAGAGGAAGAGGAGAAGGAGGGGCCAGACAAAGAAGCTGTGCA
AGAGGTAGAGGTGGTGGCGGTCTAGAAGAGGAAGGCGAATAAAGGCAGGG
AGGGGGACGTGAGAGGGGTGACGAAACGAATGAAGAAATTGACAAATTCG
TCGTTGGAGCGAGAAGTGATCCATGACTTGATTTAGGACACTGAAAACAC
GACCAAATGATGGCAGGAAAATAGAAAAATG

protein sequence of NO03G05670.1

>NO03G05670.1-protein ID=NO03G05670.1-protein|Name=NO03G05670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
METAPRALRPVLISVSSSRPTMPLLLLLLLGVVAMVSSSILDRKSNAWHA
RFPQRGWLWENREYIGRLVGEDVETKLCDPDVNSQAGYFKITGSKDKNYF
YWFFESRSSPSTDPFIIWLSGGPGCSSTLALLMENGPCSVNANGNDTIPN
PNSWTNHANMMWIDQPAGVGFSYQSSADSVTDSEDQVAEDIYQFLQSFFT
ANPQFTNNDFYVFGESYGGHFVPAVGHKIFMENQRNKGRAIMINLKGLGI
GNGLTDPELQYQFYSKYARNNTYGIELVSAEDAQKMEAAIPRCVSLIKSC
QSWGGKAPCQLARLFCSKYILEYFPVGRRNIYDIRRDCSNPPICYNFDPI
EKWLNIPSIQSALHVRKKPGNDMGRWRVCSDDVSIQFSGDVMLSFDKMLV
PLLESGIKVLNYAGDADFICNHMGVEAWSDALVWKGQEAFQATTGNVWIT
EDGKEGGIVRSAEGFTFLRMFESGHMCPFDQPAVSAEMVAAWTGVGGGG*

mRNA from alignment at chr3:1632095..1635444+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G05670.1 ID=NO03G05670.1|Name=NO03G05670.1|organism=Nannochloropsis oceanica|type=mRNA|length=3350bp|location=Sequence derived from alignment at chr3:1632095..1635444+ (Nannochloropsis oceanica)
ACAGGCGGCTCCAGGCGAGAGCGTTGGCAGGAGCGAGTAGGAGGCAGATC
GCCGCCCTCCGTCGCCCTTCCTCCGTATCGCAGCCATGGAAACTGCACCA
AGAGCACTACGACCTGTTCTAATCTCCGTCTCCTCCTCCAGGCCTACTAT
GCCTCTTCTTCTTCTCTTGCTTCTTGGCGTGGTAGCCATGGTCTCGTCGT
CGATATTGGACAGAAAGAGCAATGCATGGCACGCGCGGTTTCCGCAACGG
GGCTGGCTTTGGGAGAACAGAGAATATATTGGCAGGCTGGTTGGAGAGGA
TGGTGCGTACACGAATATGTAGGAATGGGAATCTTTCGGTTTAACAGAAT
AGATTATCCGTATATGTTGGGGTTATCTGCATGCTGTGAGAGGAGAGGCA
ATCAGAGAGGAGTGGCTGCCCTTTTCACCTTGCTATCTTGTTTTCTCACA
CTCTCTTTCACCTTATCCTCCTCACTCTTCGTATCGTCTGCAGTCGAGAC
GAAACTGTGCGATCCGGACGTCAACTCGCAAGCAGGCTATTTCAAAATCA
CCGGAAGCAAGGACAAAAACTGTACGTATAAAGAAAATTGGGATAAAGGA
AGGGAGGAAATGCTACTTGTTCGCTACCTTCCTTCCCACACACTTAAAAT
TTTAACGTATCTTATAATTGACTGTCGCAGACTTCTACTGGTTCTTCGAG
TCCCGCTCAAGCCCCTCGACAGATCCTTTCATTATCTGGCTCTCGGGCGG
TCCAGGTAAGGCCACCAGTTCCCTCCCTGCCCTCCCTCCCATCTTCCCTT
CCTTTCACCGTACTCAAATTATCTTCAATATGTAAACAATGACTCATAAA
GGTTGCTCATCCACCCTGGCCCTTTTAATGGAGAACGGCCCCTGCAGCGT
CAACGCCAACGGGAACGACACCATCCCTAACCCCAACTCCTGGACCAATC
ACGTAAGGCGGAAATAAGGGGAAATGAATGTAAAGCAGTTGAGATGGAGA
GAAGGTCCCTTATCTCGATCATCTGGCTCTGAGTTTACATCATTTTCATC
GCCATTTCATAAATTAATTGACACGTGAACTTTCTCCTTTCCCCCCTCCC
ACTCTCCCTCCATCTCTCGCTATCCCAGGCCAACATGATGTGGATCGATC
AGCCCGCGGGCGTCGGATTCTCCTATCAATCTTCGGCGGACAGCGTCACA
GATTCGGAGGATCAGGTCGCCGAGGACATATATCAGTTCCTCCAATCCTT
CTTCACGGCCAACCCTCAGTTCACGAACAACGATTTTTATGTCTTCGGGG
AGAGTTATGGTGGGTGCCGGCAGGGATGAAGGGGGGAAGGGAGGAAGAGA
ACAAAGAGACAGGAGAAGGGAGAGAGAAATCTACCGACGCCATTCCCCCT
TTCACTTTCCTATCGATTCTCTAAATCATCTTTCCCGCTCTCTCCCTTCC
TATTGCAGGCGGGCACTTTGTCCCGGCGGTGGGGCACAAGATTTTCATGG
AAAACCAACGGAACAAAGGCCGCGCTATCATGATCAATTTGAAGGGGCTT
GGCATCGGCAACGGGCTCACTGGTAAGGGATAAGAAGAAAAAGGAAGGGA
GGGGAGGGAAAGGGAGGGAAAGGGAGGGAAAGAGAGGGACGGAGGGGAGA
GATACGGGAACGATAGCCCGTACATGAAATAGACATTCACAGCTGGCCAC
CACCACATCCTCCTTCCCTCCCTCCCTCCCTCCCTCGTTCCAGACCCGGA
GCTCCAGTATCAATTCTACTCGAAGTACGCCCGCAACAACACCTACGGCA
TCGAATTAGTGTCGGCCGAGGATGCGCAGAAAATGGAAGCCGGTACGTAG
GGGAGGAATGAGGGGAGGATAAGAAATTTGAAGGAAACGTGTAGCAGATC
ACACGACAAGGCGTTTTCATCTTTTTTCGAAGCTCTTATACTCCCTCAAA
CGTTTTCCCTCTCGTCCTCTCCACCCGTCCCTCACAGCCATTCCCCGGTG
CGTGTCTCTGATCAAATCCTGCCAGTCCTGGGGAGGCAAGGCGCCCTGTC
AGCTGGCCCGCCTTTTTTGCAGCAAGTACATCTTGGAGTACTTCCCCGTA
GGTGAGTATAGAGAGAGGGAGGGATCAAAGGAGAAAGGATGGGAGGGAGG
AAGGGAGGGGAAAGTGGATGTTGCCCTACAGCGCAAACGAATGAATGGTG
ACGAACGTGCTAGGTGGGTCTGCAAACCGACCGTGACTCACCCTCGATCC
ATACTTGACTCCCTTTGCTCCCTCCTTCCCTCCCTTCCCCAGGCCGACGC
AACATCTACGACATCCGGCGAGACTGTTCCAACCCTCCCATCTGCTATAA
TTTCGACCCCATCGAGAAGTGGCTCAACATACCTAGCATTCAGTCTGCTC
TGCATGTGCGGAAGAGTAAGTCGACAACACTCCCTTCTACCCTCCCTCTC
TCTCAGATCGACTCACTCACAATTTTCAACGCCCTCCCTCCCTGCCGCCC
TCCCTTGTTCCTTCCAGAGCCAGGGAACGACATGGGCCGGTGGCGTGTGT
GTAGCGACGATGTGAGCATCCAGTTTTCCGGGGACGTGATGCTCAGCTTT
GACAAGATGCTTGTTCCCTTGCTCGAGTCAGGCATCAAGGTAGACGGAAG
GAGGGAGGAAGGGACGGATGGAGGGAAGGGACAATAATAAGGGTGGAGGC
TAAACCTTGCACTACTTGGAGGTCTCTCACCTCCTCTCTCCTTCCCTCCC
TCCCTACCTTCTTCTCATTTGGGCTCAGGTCTTGAATTATGCCGGGGACG
CGGACTTCATCTGCAATCACATGGGGGTGGAGGCCTGGAGCGATGCCCTG
GTTTGGAAGGGGCAAGAGGCATTCCAAGCCACCACAGGCAACGTATGGAT
AACCGAGGACGGAAAAGAGGGAGGAATAGTGCGGTCTGCGGAGGGATTCA
CGTTTTTGAGGATGTTTGAGAGTGGCCACATGTGTCCTTTTGACCAGCCA
GCGGTGAGTGCTGAGATGGTGGCGGCCTGGACGGGCGTGGGGGGGGGGGG
GTAAAAGATAGGTGGGAGGCGGTGGTGCTGGCACCTGAGAAAGAAGGGAA
AGAGGAAGAGGTCGGTGGATTGGAAGGAGAGGAAGAGGAGAAGGAGGGGC
CAGACAAAGAAGCTGTGCAAGAGGTAGAGGTGGTGGCGGTCTAGAAGAGG
AAGGCGAATAAAGGCAGGGAGGGGGACGTGAGAGGGGTGACGAAACGAAT
GAAGAAATTGACAAATTCGTCGTTGGAGCGAGAAGTGATCCATGACTTGA
TTTAGGACACTGAAAACACGACCAAATGATGGCAGGAAAATAGAAAAATG

Coding sequence (CDS) from alignment at chr3:1632095..1635444+

>NO03G05670.1 ID=NO03G05670.1|Name=NO03G05670.1|organism=Nannochloropsis oceanica|type=CDS|length=1500bp|location=Sequence derived from alignment at chr3:1632095..1635444+ (Nannochloropsis oceanica)
ATGGAAACTGCACCAAGAGCACTACGACCTGTTCTAATCTCCGTCTCCTC
CTCCAGGCCTACTATGCCTCTTCTTCTTCTCTTGCTTCTTGGCGTGGTAG
CCATGGTCTCGTCGTCGATATTGGACAGAAAGAGCAATGCATGGCACGCG
CGGTTTCCGCAACGGGGCTGGCTTTGGGAGAACAGAGAATATATTGGCAG
GCTGGTTGGAGAGGATGTCGAGACGAAACTGTGCGATCCGGACGTCAACT
CGCAAGCAGGCTATTTCAAAATCACCGGAAGCAAGGACAAAAACTACTTC
TACTGGTTCTTCGAGTCCCGCTCAAGCCCCTCGACAGATCCTTTCATTAT
CTGGCTCTCGGGCGGTCCAGGTTGCTCATCCACCCTGGCCCTTTTAATGG
AGAACGGCCCCTGCAGCGTCAACGCCAACGGGAACGACACCATCCCTAAC
CCCAACTCCTGGACCAATCACGCCAACATGATGTGGATCGATCAGCCCGC
GGGCGTCGGATTCTCCTATCAATCTTCGGCGGACAGCGTCACAGATTCGG
AGGATCAGGTCGCCGAGGACATATATCAGTTCCTCCAATCCTTCTTCACG
GCCAACCCTCAGTTCACGAACAACGATTTTTATGTCTTCGGGGAGAGTTA
TGGCGGGCACTTTGTCCCGGCGGTGGGGCACAAGATTTTCATGGAAAACC
AACGGAACAAAGGCCGCGCTATCATGATCAATTTGAAGGGGCTTGGCATC
GGCAACGGGCTCACTGACCCGGAGCTCCAGTATCAATTCTACTCGAAGTA
CGCCCGCAACAACACCTACGGCATCGAATTAGTGTCGGCCGAGGATGCGC
AGAAAATGGAAGCCGCCATTCCCCGGTGCGTGTCTCTGATCAAATCCTGC
CAGTCCTGGGGAGGCAAGGCGCCCTGTCAGCTGGCCCGCCTTTTTTGCAG
CAAGTACATCTTGGAGTACTTCCCCGTAGGCCGACGCAACATCTACGACA
TCCGGCGAGACTGTTCCAACCCTCCCATCTGCTATAATTTCGACCCCATC
GAGAAGTGGCTCAACATACCTAGCATTCAGTCTGCTCTGCATGTGCGGAA
GAAGCCAGGGAACGACATGGGCCGGTGGCGTGTGTGTAGCGACGATGTGA
GCATCCAGTTTTCCGGGGACGTGATGCTCAGCTTTGACAAGATGCTTGTT
CCCTTGCTCGAGTCAGGCATCAAGGTCTTGAATTATGCCGGGGACGCGGA
CTTCATCTGCAATCACATGGGGGTGGAGGCCTGGAGCGATGCCCTGGTTT
GGAAGGGGCAAGAGGCATTCCAAGCCACCACAGGCAACGTATGGATAACC
GAGGACGGAAAAGAGGGAGGAATAGTGCGGTCTGCGGAGGGATTCACGTT
TTTGAGGATGTTTGAGAGTGGCCACATGTGTCCTTTTGACCAGCCAGCGG
TGAGTGCTGAGATGGTGGCGGCCTGGACGGGCGTGGGGGGGGGGGGGTAA

Synonyms

Publications