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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:1517236..1519564 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G05320.1 vs.
Match: CBN78720.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 179.1 bits (453), Expect = 5.000e-41 Identity = 241/702 (34.33%), Postives = 348/702 (49.57%), Query Frame = 0
Query: 8 GRPAGKGKVKAKKWGGGDGNKKAVAAFTNNKSKGKASSSS----SSAGPKQPRRRPQDI-------YEYTDEDTARHRRPRDDE--DDGNSKYNFVPGGDDEEIDEDGAFDSEDEKRYGDLMRQIEENDETRKKRRRSDRGEESEEEDEDEEMDADPEEGEMSLSDMLG----------GGGKAGGGKLEQEQKKKSKKAAMEQEEEKDMEEEEEEEEEEEEEDED--DEEEEEEGEEEEDDDEEGDHDGLMDMI----TQLAATQQQQQASSSSSFSSSSAANQALQSFPDSLFATGPASGLTMEAMLNALENTKGYGNVRRRLSALVQDGKT-AIQAPAPSTVQARAERSLVYKEKKKDVETWLPLIASARQAESLNFAHNPVLQPSQAALIGKFAPETEMEKAVHDLLVHAKADRETAVEQGEEEDLQARGISPENVKIRRAELAKMRALLFYEQQKRHQANKIKSKAYHRIRKRQRLRAEDTARENLRAVDPAAARKMDEEEAAGRAQERMTLRHKNTSKWAKQVLRAGGGKGSGGLETRRAVTEQILLGEQLRRKAGIREGEREEDEGVEEDESDEEGLEGMDDAQRADVLRKRAAGKVRSLLGEVVEGGKEGGKEGGLMGMKFMTQAVEKQRAKAQAEVEKVLRELEQQEEEEEEEEEE-----EEEGHVVEEAGRKGGRKDMEGLREGSLQVAGV 675
GR G+G+ GG G ++ + +G A SS G K RR ++ YE+ D A R DDE D N +DEE+DED AFDS DE RYG+LM I + R+ ++ +E +E EDE D E G MS+ DML G AG GK K K+K QE + E E E + DED DEE E+ +++D+DE+ H LM + Q AA Q+ + SS N A +TME ++ +L+ +KG+ V+++++A GK+ A AP T + RAER + Y +KKD+ W+ + + R+AE+L+FA S AAL K T+MEK V ++L+ A E + + E E+L+++ + E VK R+AEL+KMRAL+FY+++K+H NKIKSK Y +I+KRQR RA D +E + AARK RA+ERM+LRHKNTSKW K LRA KG G + R+A+ EQ+ +G++LR K G +G ED E +EEG G + ++ K + +GE +G GK LM M FM +A++KQR +A+ E VLRELE+ + + + + + ++ V R R G G + AGV
Sbjct: 15 GRGRGRGR-------GGGGGRRPRGRGGRSSGRGTALPSSITGRGGGGAKGRDRRQRNGGDGRGAGYEFDDGGGASDRHKYDDEAGDSDNGPGPEDSDFEDEEVDEDAAFDSADEARYGELMDTILQ----RRSGKQGGSSDEEGDESEDESEDDGGEGGGMSVMDMLAANEAAELAQKNGVVAGTGK----GKGKAKGGGGVQESSRTAEVSSAESSEGDAMDEDVSDEEALEDDSDDDDEDEDERHARLMGFVGGLGDQAAAAQRAAEDRRSSQLLKEGEFNSASGGLAAGRGGGARKGAVTMETLMGSLQKSKGFAAVKKQVAAF--SGKSGAPAAPVSKTAELRAEREMAYDNRKKDMGKWVAPVQANRKAETLDFAPTVKTNLSNAALASKMEATTDMEKEV-EMLLTAGGASEAGLAENEMEELKSKAYTVEEVKERQAELSKMRALMFYQERKQHHMNKIKSKVYRKIKKRQRDRAGDAQQEEEGELGEVAARK--------RAEERMSLRHKNTSKWVKNALRA---KGGAGKDDRKAIAEQLKIGQELRAKMGGVDGNSSEDSSSSE---EEEGGGGASNGKKRRSALKDTDREELERIGEDEDGIAMSGKGAALMKMAFMQKAMDKQRERAREEASVVLRELEEAADADADADADADADGSDDDETVRRNKRSKKRAGKAGGAAGKTEDAGV 684
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G05320.1 ID=NO03G05320.1|Name=NO03G05320.1|organism=Nannochloropsis oceanica|type=mRNA|length=2329bp
ACAGCAAATCAAAAACCCCACGAATGGGCTTGGTGCGACGACAAGGCCGG
CCGGCAGGTAAGGGCAAAGTCAAAGCTAAGAAGTGGGGTGGCGGCGATGG
CAACAAGAAAGCGGTGGCCGCTTTCACCAATAACAAGAGCAAGGGGAAGG
CCAGTAGCAGTAGCAGCAGCGCAGGCCCGAAGCAGCCGCGGCGACGGCCG
CAGGACATCTACGAGTACACGGACGAGGATACGGCACGCCATCGTCGGCC
TAGGGATGACGAGGACGATGGGAATTCCAAGTACAATTTTGTGCCAGGGG
GGGACGACGAGGAGATCGACGAGGATGGGGCGTTTGACTCGGAAGACGAG
AAACGTTATGGGGATTTGATGCGGCAGATCGAGGAGAACGACGAGACACG
GAAGAAGAGGAGGCGCAGCGATCGTGGTGAAGAAAGTGAAGAGGAGGACG
AGGACGAGGAGATGGATGCAGATCCCGAGGAAGGAGAGATGAGCTTGTCG
GACATGCTGGGTGGAGGTGGAAAGGCAGGAGGAGGGAAATTGGAGCAGGA
GCAGAAGAAGAAAAGTAAAAAGGCTGCTATGGAGCAGGAGGAGGAAAAGG
ATATGGAGGAAGAGGAAGAAGAGGAGGAGGAGGAAGAAGAGGAGGACGAG
GACGACGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGATGACGACGA
GGAAGGAGACCACGACGGTCTGATGGACATGATCACCCAGCTGGCAGCCA
CGCAGCAACAGCAACAAGCGTCTTCTTCCTCTTCTTTCTCATCCTCCTCC
GCAGCCAACCAGGCGCTCCAGTCATTTCCCGACTCCCTCTTTGCCACCGG
CCCTGCCTCCGGCCTGACCATGGAGGCCATGCTCAATGCCCTGGAGAACA
CAAAAGGTTACGGCAACGTCCGTCGACGCCTCTCCGCCCTAGTCCAAGAC
GGCAAGACTGCGATCCAAGCCCCCGCGCCCTCAACTGTCCAAGCCCGTGC
AGAACGTTCCCTCGTATACAAGGAGAAGAAAAAAGACGTCGAAACCTGGC
TTCCCCTCATCGCCTCCGCCCGCCAAGCCGAATCCCTCAATTTCGCGCAT
AACCCAGTCCTCCAACCGTCCCAAGCGGCCTTAATTGGTAAGTTTGCACC
AGAAACGGAAATGGAAAAGGCCGTGCACGACCTCCTCGTCCATGCCAAAG
CGGACCGAGAAACAGCAGTCGAGCAAGGGGAAGAGGAGGACCTGCAGGCC
CGCGGCATCTCTCCTGAAAACGTCAAGATCCGTCGGGCGGAGTTGGCCAA
GATGCGTGCCCTGCTGTTTTACGAGCAGCAAAAGAGGCATCAAGCGAATA
AAATCAAGTCCAAGGCTTACCATCGCATCCGAAAGCGACAGCGGCTTCGG
GCCGAGGACACGGCGCGAGAGAATCTCCGCGCGGTCGACCCGGCTGCGGC
CCGTAAGATGGACGAGGAGGAGGCAGCAGGGAGGGCACAAGAAAGGATGA
CACTAAGGCATAAAAATACAAGCAAGTGGGCGAAGCAGGTGCTTCGGGCG
GGAGGGGGGAAGGGGTCGGGAGGGCTGGAGACACGACGGGCTGTAACGGA
ACAGATCTTGCTGGGGGAGCAGTTGAGGAGGAAGGCGGGAATCAGGGAGG
GGGAAAGGGAGGAGGATGAGGGAGTGGAGGAGGATGAGAGTGATGAGGAG
GGGTTGGAAGGGATGGACGATGCACAGAGGGCGGATGTGCTGAGGAAGAG
AGCGGCCGGGAAGGTGAGGTCGTTGCTCGGGGAGGTGGTGGAAGGAGGTA
AGGAGGGAGGGAAGGAGGGAGGGCTGATGGGTATGAAATTTATGACCCAG
GCGGTGGAGAAGCAGAGGGCTAAAGCTCAGGCAGAGGTGGAAAAGGTTTT
GAGGGAACTGGAGCAGCAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGGACATGTGGTGGAAGAGGCGGGGAGGAAGGGAGGGAGGAAG
GACATGGAGGGTTTGAGGGAGGGGTCGTTGCAGGTGGCAGGGGTGATGTG
GGGGGGCAGGGAGGGCGAGTTAAGGTGGCGGGACCCATCACTGTTGAAGG
AGGAGGAGGAGGGAGCGGTGGCAACAGTGGCAGCAGTAGCAGCGGCTCTG
CCTTTCCTTCCATTGGACAGGATTCGACGGGAGTTCAAGAGCCTCGGCTT
AAAGAGGCGCAAGCCCGTGGCCCTGTTAGTTTTGCCACAGAGGTTAAGAG
GGTAGCAGTAGCTGCAGTAGGAGCAGCGGCAGGAGCAGCAGCAGCGGTGC
ATAAGCGCGTGGCGTCGTTCGCTGTCAGC back to topprotein sequence of NO03G05320.1 >NO03G05320.1-protein ID=NO03G05320.1-protein|Name=NO03G05320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=744bp
MGLVRRQGRPAGKGKVKAKKWGGGDGNKKAVAAFTNNKSKGKASSSSSSA
GPKQPRRRPQDIYEYTDEDTARHRRPRDDEDDGNSKYNFVPGGDDEEIDE
DGAFDSEDEKRYGDLMRQIEENDETRKKRRRSDRGEESEEEDEDEEMDAD
PEEGEMSLSDMLGGGGKAGGGKLEQEQKKKSKKAAMEQEEEKDMEEEEEE
EEEEEEEDEDDEEEEEEGEEEEDDDEEGDHDGLMDMITQLAATQQQQQAS
SSSSFSSSSAANQALQSFPDSLFATGPASGLTMEAMLNALENTKGYGNVR
RRLSALVQDGKTAIQAPAPSTVQARAERSLVYKEKKKDVETWLPLIASAR
QAESLNFAHNPVLQPSQAALIGKFAPETEMEKAVHDLLVHAKADRETAVE
QGEEEDLQARGISPENVKIRRAELAKMRALLFYEQQKRHQANKIKSKAYH
RIRKRQRLRAEDTARENLRAVDPAAARKMDEEEAAGRAQERMTLRHKNTS
KWAKQVLRAGGGKGSGGLETRRAVTEQILLGEQLRRKAGIREGEREEDEG
VEEDESDEEGLEGMDDAQRADVLRKRAAGKVRSLLGEVVEGGKEGGKEGG
LMGMKFMTQAVEKQRAKAQAEVEKVLRELEQQEEEEEEEEEEEEEGHVVE
EAGRKGGRKDMEGLREGSLQVAGVMWGGREGELRWRDPSLLKEEEEGAVA
TVAAVAAALPFLPLDRIRREFKSLGLKRRKPVALLVLPQRLRG* back to topmRNA from alignment at chr3:1517236..1519564+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G05320.1 ID=NO03G05320.1|Name=NO03G05320.1|organism=Nannochloropsis oceanica|type=mRNA|length=2329bp|location=Sequence derived from alignment at chr3:1517236..1519564+ (Nannochloropsis oceanica)
ACAGCAAATCAAAAACCCCACGAATGGGCTTGGTGCGACGACAAGGCCGG
CCGGCAGGTAAGGGCAAAGTCAAAGCTAAGAAGTGGGGTGGCGGCGATGG
CAACAAGAAAGCGGTGGCCGCTTTCACCAATAACAAGAGCAAGGGGAAGG
CCAGTAGCAGTAGCAGCAGCGCAGGCCCGAAGCAGCCGCGGCGACGGCCG
CAGGACATCTACGAGTACACGGACGAGGATACGGCACGCCATCGTCGGCC
TAGGGATGACGAGGACGATGGGAATTCCAAGTACAATTTTGTGCCAGGGG
GGGACGACGAGGAGATCGACGAGGATGGGGCGTTTGACTCGGAAGACGAG
AAACGTTATGGGGATTTGATGCGGCAGATCGAGGAGAACGACGAGACACG
GAAGAAGAGGAGGCGCAGCGATCGTGGTGAAGAAAGTGAAGAGGAGGACG
AGGACGAGGAGATGGATGCAGATCCCGAGGAAGGAGAGATGAGCTTGTCG
GACATGCTGGGTGGAGGTGGAAAGGCAGGAGGAGGGAAATTGGAGCAGGA
GCAGAAGAAGAAAAGTAAAAAGGCTGCTATGGAGCAGGAGGAGGAAAAGG
ATATGGAGGAAGAGGAAGAAGAGGAGGAGGAGGAAGAAGAGGAGGACGAG
GACGACGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGATGACGACGA
GGAAGGAGACCACGACGGTCTGATGGACATGATCACCCAGCTGGCAGCCA
CGCAGCAACAGCAACAAGCGTCTTCTTCCTCTTCTTTCTCATCCTCCTCC
GCAGCCAACCAGGCGCTCCAGTCATTTCCCGACTCCCTCTTTGCCACCGG
CCCTGCCTCCGGCCTGACCATGGAGGCCATGCTCAATGCCCTGGAGAACA
CAAAAGGTTACGGCAACGTCCGTCGACGCCTCTCCGCCCTAGTCCAAGAC
GGCAAGACTGCGATCCAAGCCCCCGCGCCCTCAACTGTCCAAGCCCGTGC
AGAACGTTCCCTCGTATACAAGGAGAAGAAAAAAGACGTCGAAACCTGGC
TTCCCCTCATCGCCTCCGCCCGCCAAGCCGAATCCCTCAATTTCGCGCAT
AACCCAGTCCTCCAACCGTCCCAAGCGGCCTTAATTGGTAAGTTTGCACC
AGAAACGGAAATGGAAAAGGCCGTGCACGACCTCCTCGTCCATGCCAAAG
CGGACCGAGAAACAGCAGTCGAGCAAGGGGAAGAGGAGGACCTGCAGGCC
CGCGGCATCTCTCCTGAAAACGTCAAGATCCGTCGGGCGGAGTTGGCCAA
GATGCGTGCCCTGCTGTTTTACGAGCAGCAAAAGAGGCATCAAGCGAATA
AAATCAAGTCCAAGGCTTACCATCGCATCCGAAAGCGACAGCGGCTTCGG
GCCGAGGACACGGCGCGAGAGAATCTCCGCGCGGTCGACCCGGCTGCGGC
CCGTAAGATGGACGAGGAGGAGGCAGCAGGGAGGGCACAAGAAAGGATGA
CACTAAGGCATAAAAATACAAGCAAGTGGGCGAAGCAGGTGCTTCGGGCG
GGAGGGGGGAAGGGGTCGGGAGGGCTGGAGACACGACGGGCTGTAACGGA
ACAGATCTTGCTGGGGGAGCAGTTGAGGAGGAAGGCGGGAATCAGGGAGG
GGGAAAGGGAGGAGGATGAGGGAGTGGAGGAGGATGAGAGTGATGAGGAG
GGGTTGGAAGGGATGGACGATGCACAGAGGGCGGATGTGCTGAGGAAGAG
AGCGGCCGGGAAGGTGAGGTCGTTGCTCGGGGAGGTGGTGGAAGGAGGTA
AGGAGGGAGGGAAGGAGGGAGGGCTGATGGGTATGAAATTTATGACCCAG
GCGGTGGAGAAGCAGAGGGCTAAAGCTCAGGCAGAGGTGGAAAAGGTTTT
GAGGGAACTGGAGCAGCAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGGACATGTGGTGGAAGAGGCGGGGAGGAAGGGAGGGAGGAAG
GACATGGAGGGTTTGAGGGAGGGGTCGTTGCAGGTGGCAGGGGTGATGTG
GGGGGGCAGGGAGGGCGAGTTAAGGTGGCGGGACCCATCACTGTTGAAGG
AGGAGGAGGAGGGAGCGGTGGCAACAGTGGCAGCAGTAGCAGCGGCTCTG
CCTTTCCTTCCATTGGACAGGATTCGACGGGAGTTCAAGAGCCTCGGCTT
AAAGAGGCGCAAGCCCGTGGCCCTGTTAGTTTTGCCACAGAGGTTAAGAG
GGTAGCAGTAGCTGCAGTAGGAGCAGCGGCAGGAGCAGCAGCAGCGGTGC
ATAAGCGCGTGGCGTCGTTCGCTGTCAGC back to topCoding sequence (CDS) from alignment at chr3:1517236..1519564+ >NO03G05320.1 ID=NO03G05320.1|Name=NO03G05320.1|organism=Nannochloropsis oceanica|type=CDS|length=2232bp|location=Sequence derived from alignment at chr3:1517236..1519564+ (Nannochloropsis oceanica)
ATGGGCTTGGTGCGACGACAAGGCCGGCCGGCAGGTAAGGGCAAAGTCAA
AGCTAAGAAGTGGGGTGGCGGCGATGGCAACAAGAAAGCGGTGGCCGCTT
TCACCAATAACAAGAGCAAGGGGAAGGCCAGTAGCAGTAGCAGCAGCGCA
GGCCCGAAGCAGCCGCGGCGACGGCCGCAGGACATCTACGAGTACACGGA
CGAGGATACGGCACGCCATCGTCGGCCTAGGGATGACGAGGACGATGGGA
ATTCCAAGTACAATTTTGTGCCAGGGGGGGACGACGAGGAGATCGACGAG
GATGGGGCGTTTGACTCGGAAGACGAGAAACGTTATGGGGATTTGATGCG
GCAGATCGAGGAGAACGACGAGACACGGAAGAAGAGGAGGCGCAGCGATC
GTGGTGAAGAAAGTGAAGAGGAGGACGAGGACGAGGAGATGGATGCAGAT
CCCGAGGAAGGAGAGATGAGCTTGTCGGACATGCTGGGTGGAGGTGGAAA
GGCAGGAGGAGGGAAATTGGAGCAGGAGCAGAAGAAGAAAAGTAAAAAGG
CTGCTATGGAGCAGGAGGAGGAAAAGGATATGGAGGAAGAGGAAGAAGAG
GAGGAGGAGGAAGAAGAGGAGGACGAGGACGACGAGGAGGAGGAGGAGGA
GGGGGAGGAGGAGGAGGATGACGACGAGGAAGGAGACCACGACGGTCTGA
TGGACATGATCACCCAGCTGGCAGCCACGCAGCAACAGCAACAAGCGTCT
TCTTCCTCTTCTTTCTCATCCTCCTCCGCAGCCAACCAGGCGCTCCAGTC
ATTTCCCGACTCCCTCTTTGCCACCGGCCCTGCCTCCGGCCTGACCATGG
AGGCCATGCTCAATGCCCTGGAGAACACAAAAGGTTACGGCAACGTCCGT
CGACGCCTCTCCGCCCTAGTCCAAGACGGCAAGACTGCGATCCAAGCCCC
CGCGCCCTCAACTGTCCAAGCCCGTGCAGAACGTTCCCTCGTATACAAGG
AGAAGAAAAAAGACGTCGAAACCTGGCTTCCCCTCATCGCCTCCGCCCGC
CAAGCCGAATCCCTCAATTTCGCGCATAACCCAGTCCTCCAACCGTCCCA
AGCGGCCTTAATTGGTAAGTTTGCACCAGAAACGGAAATGGAAAAGGCCG
TGCACGACCTCCTCGTCCATGCCAAAGCGGACCGAGAAACAGCAGTCGAG
CAAGGGGAAGAGGAGGACCTGCAGGCCCGCGGCATCTCTCCTGAAAACGT
CAAGATCCGTCGGGCGGAGTTGGCCAAGATGCGTGCCCTGCTGTTTTACG
AGCAGCAAAAGAGGCATCAAGCGAATAAAATCAAGTCCAAGGCTTACCAT
CGCATCCGAAAGCGACAGCGGCTTCGGGCCGAGGACACGGCGCGAGAGAA
TCTCCGCGCGGTCGACCCGGCTGCGGCCCGTAAGATGGACGAGGAGGAGG
CAGCAGGGAGGGCACAAGAAAGGATGACACTAAGGCATAAAAATACAAGC
AAGTGGGCGAAGCAGGTGCTTCGGGCGGGAGGGGGGAAGGGGTCGGGAGG
GCTGGAGACACGACGGGCTGTAACGGAACAGATCTTGCTGGGGGAGCAGT
TGAGGAGGAAGGCGGGAATCAGGGAGGGGGAAAGGGAGGAGGATGAGGGA
GTGGAGGAGGATGAGAGTGATGAGGAGGGGTTGGAAGGGATGGACGATGC
ACAGAGGGCGGATGTGCTGAGGAAGAGAGCGGCCGGGAAGGTGAGGTCGT
TGCTCGGGGAGGTGGTGGAAGGAGGTAAGGAGGGAGGGAAGGAGGGAGGG
CTGATGGGTATGAAATTTATGACCCAGGCGGTGGAGAAGCAGAGGGCTAA
AGCTCAGGCAGAGGTGGAAAAGGTTTTGAGGGAACTGGAGCAGCAGGAAG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGACATGTGGTGGAA
GAGGCGGGGAGGAAGGGAGGGAGGAAGGACATGGAGGGTTTGAGGGAGGG
GTCGTTGCAGGTGGCAGGGGTGATGTGGGGGGGCAGGGAGGGCGAGTTAA
GGTGGCGGGACCCATCACTGTTGAAGGAGGAGGAGGAGGGAGCGGTGGCA
ACAGTGGCAGCAGTAGCAGCGGCTCTGCCTTTCCTTCCATTGGACAGGAT
TCGACGGGAGTTCAAGAGCCTCGGCTTAAAGAGGCGCAAGCCCGTGGCCC
TGTTAGTTTTGCCACAGAGGTTAAGAGGGTAG back to top
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