Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr3 genome chr3:1517236..1519564 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G05320.1 vs.
Match: CBN78720.1 (conserved unknown protein [Ectocarpus siliculosus])
HSP 1 Score: 179.1 bits (453), Expect = 5.000e-41
Identity = 241/702 (34.33%), Postives = 348/702 (49.57%), Query Frame = 0
Query: 8 GRPAGKGKVKAKKWGGGDGNKKAVAAFTNNKSKGKASSSS----SSAGPKQPRRRPQDI-------YEYTDEDTARHRRPRDDE--DDGNSKYNFVPGGDDEEIDEDGAFDSEDEKRYGDLMRQIEENDETRKKRRRSDRGEESEEEDEDEEMDADPEEGEMSLSDMLG----------GGGKAGGGKLEQEQKKKSKKAAMEQEEEKDMEEEEEEEEEEEEEDED--DEEEEEEGEEEEDDDEEGDHDGLMDMI----TQLAATQQQQQASSSSSFSSSSAANQALQSFPDSLFATGPASGLTMEAMLNALENTKGYGNVRRRLSALVQDGKT-AIQAPAPSTVQARAERSLVYKEKKKDVETWLPLIASARQAESLNFAHNPVLQPSQAALIGKFAPETEMEKAVHDLLVHAKADRETAVEQGEEEDLQARGISPENVKIRRAELAKMRALLFYEQQKRHQANKIKSKAYHRIRKRQRLRAEDTARENLRAVDPAAARKMDEEEAAGRAQERMTLRHKNTSKWAKQVLRAGGGKGSGGLETRRAVTEQILLGEQLRRKAGIREGEREEDEGVEEDESDEEGLEGMDDAQRADVLRKRAAGKVRSLLGEVVEGGKEGGKEGGLMGMKFMTQAVEKQRAKAQAEVEKVLRELEQQEEEEEEEEEE-----EEEGHVVEEAGRKGGRKDMEGLREGSLQVAGV 675
GR G+G+ GG G ++ + +G A SS G K RR ++ YE+ D A R DDE D N +DEE+DED AFDS DE RYG+LM I + R+ ++ +E +E EDE D E G MS+ DML G AG GK K K+K QE + E E E + DED DEE E+ +++D+DE+ H LM + Q AA Q+ + SS N A +TME ++ +L+ +KG+ V+++++A GK+ A AP T + RAER + Y +KKD+ W+ + + R+AE+L+FA S AAL K T+MEK V ++L+ A E + + E E+L+++ + E VK R+AEL+KMRAL+FY+++K+H NKIKSK Y +I+KRQR RA D +E + AARK RA+ERM+LRHKNTSKW K LRA KG G + R+A+ EQ+ +G++LR K G +G ED E +EEG G + ++ K + +GE +G GK LM M FM +A++KQR +A+ E VLRELE+ + + + + + ++ V R R G G + AGV
Sbjct: 15 GRGRGRGR-------GGGGGRRPRGRGGRSSGRGTALPSSITGRGGGGAKGRDRRQRNGGDGRGAGYEFDDGGGASDRHKYDDEAGDSDNGPGPEDSDFEDEEVDEDAAFDSADEARYGELMDTILQ----RRSGKQGGSSDEEGDESEDESEDDGGEGGGMSVMDMLAANEAAELAQKNGVVAGTGK----GKGKAKGGGGVQESSRTAEVSSAESSEGDAMDEDVSDEEALEDDSDDDDEDEDERHARLMGFVGGLGDQAAAAQRAAEDRRSSQLLKEGEFNSASGGLAAGRGGGARKGAVTMETLMGSLQKSKGFAAVKKQVAAF--SGKSGAPAAPVSKTAELRAEREMAYDNRKKDMGKWVAPVQANRKAETLDFAPTVKTNLSNAALASKMEATTDMEKEV-EMLLTAGGASEAGLAENEMEELKSKAYTVEEVKERQAELSKMRALMFYQERKQHHMNKIKSKVYRKIKKRQRDRAGDAQQEEEGELGEVAARK--------RAEERMSLRHKNTSKWVKNALRA---KGGAGKDDRKAIAEQLKIGQELRAKMGGVDGNSSEDSSSSE---EEEGGGGASNGKKRRSALKDTDREELERIGEDEDGIAMSGKGAALMKMAFMQKAMDKQRERAREEASVVLRELEEAADADADADADADADGSDDDETVRRNKRSKKRAGKAGGAAGKTEDAGV 684
The following BLAST results are available for this feature:
BLAST of NO03G05320.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 Expect = 5.00e-41 / Id = 34.33 Sequence CBN78720.1
Match Name E-value Identity Description
CBN78720.1 5.000e-41 34.33 conserved unknown protein [Ectocarpus siliculosus] [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO03G05320.1 ID=NO03G05320.1|Name=NO03G05320.1|organism=Nannochloropsis oceanica|type=mRNA|length=2329bp ACAGCAAATCAAAAACCCCACGAATGGGCTTGGTGCGACGACAAGGCCGG CCGGCAGGTAAGGGCAAAGTCAAAGCTAAGAAGTGGGGTGGCGGCGATGG CAACAAGAAAGCGGTGGCCGCTTTCACCAATAACAAGAGCAAGGGGAAGG CCAGTAGCAGTAGCAGCAGCGCAGGCCCGAAGCAGCCGCGGCGACGGCCG CAGGACATCTACGAGTACACGGACGAGGATACGGCACGCCATCGTCGGCC TAGGGATGACGAGGACGATGGGAATTCCAAGTACAATTTTGTGCCAGGGG GGGACGACGAGGAGATCGACGAGGATGGGGCGTTTGACTCGGAAGACGAG AAACGTTATGGGGATTTGATGCGGCAGATCGAGGAGAACGACGAGACACG GAAGAAGAGGAGGCGCAGCGATCGTGGTGAAGAAAGTGAAGAGGAGGACG AGGACGAGGAGATGGATGCAGATCCCGAGGAAGGAGAGATGAGCTTGTCG GACATGCTGGGTGGAGGTGGAAAGGCAGGAGGAGGGAAATTGGAGCAGGA GCAGAAGAAGAAAAGTAAAAAGGCTGCTATGGAGCAGGAGGAGGAAAAGG ATATGGAGGAAGAGGAAGAAGAGGAGGAGGAGGAAGAAGAGGAGGACGAG GACGACGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGATGACGACGA GGAAGGAGACCACGACGGTCTGATGGACATGATCACCCAGCTGGCAGCCA CGCAGCAACAGCAACAAGCGTCTTCTTCCTCTTCTTTCTCATCCTCCTCC GCAGCCAACCAGGCGCTCCAGTCATTTCCCGACTCCCTCTTTGCCACCGG CCCTGCCTCCGGCCTGACCATGGAGGCCATGCTCAATGCCCTGGAGAACA CAAAAGGTTACGGCAACGTCCGTCGACGCCTCTCCGCCCTAGTCCAAGAC GGCAAGACTGCGATCCAAGCCCCCGCGCCCTCAACTGTCCAAGCCCGTGC AGAACGTTCCCTCGTATACAAGGAGAAGAAAAAAGACGTCGAAACCTGGC TTCCCCTCATCGCCTCCGCCCGCCAAGCCGAATCCCTCAATTTCGCGCAT AACCCAGTCCTCCAACCGTCCCAAGCGGCCTTAATTGGTAAGTTTGCACC AGAAACGGAAATGGAAAAGGCCGTGCACGACCTCCTCGTCCATGCCAAAG CGGACCGAGAAACAGCAGTCGAGCAAGGGGAAGAGGAGGACCTGCAGGCC CGCGGCATCTCTCCTGAAAACGTCAAGATCCGTCGGGCGGAGTTGGCCAA GATGCGTGCCCTGCTGTTTTACGAGCAGCAAAAGAGGCATCAAGCGAATA AAATCAAGTCCAAGGCTTACCATCGCATCCGAAAGCGACAGCGGCTTCGG GCCGAGGACACGGCGCGAGAGAATCTCCGCGCGGTCGACCCGGCTGCGGC CCGTAAGATGGACGAGGAGGAGGCAGCAGGGAGGGCACAAGAAAGGATGA CACTAAGGCATAAAAATACAAGCAAGTGGGCGAAGCAGGTGCTTCGGGCG GGAGGGGGGAAGGGGTCGGGAGGGCTGGAGACACGACGGGCTGTAACGGA ACAGATCTTGCTGGGGGAGCAGTTGAGGAGGAAGGCGGGAATCAGGGAGG GGGAAAGGGAGGAGGATGAGGGAGTGGAGGAGGATGAGAGTGATGAGGAG GGGTTGGAAGGGATGGACGATGCACAGAGGGCGGATGTGCTGAGGAAGAG AGCGGCCGGGAAGGTGAGGTCGTTGCTCGGGGAGGTGGTGGAAGGAGGTA AGGAGGGAGGGAAGGAGGGAGGGCTGATGGGTATGAAATTTATGACCCAG GCGGTGGAGAAGCAGAGGGCTAAAGCTCAGGCAGAGGTGGAAAAGGTTTT GAGGGAACTGGAGCAGCAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGG AGGAGGAGGGACATGTGGTGGAAGAGGCGGGGAGGAAGGGAGGGAGGAAG GACATGGAGGGTTTGAGGGAGGGGTCGTTGCAGGTGGCAGGGGTGATGTG GGGGGGCAGGGAGGGCGAGTTAAGGTGGCGGGACCCATCACTGTTGAAGG AGGAGGAGGAGGGAGCGGTGGCAACAGTGGCAGCAGTAGCAGCGGCTCTG CCTTTCCTTCCATTGGACAGGATTCGACGGGAGTTCAAGAGCCTCGGCTT AAAGAGGCGCAAGCCCGTGGCCCTGTTAGTTTTGCCACAGAGGTTAAGAG GGTAGCAGTAGCTGCAGTAGGAGCAGCGGCAGGAGCAGCAGCAGCGGTGC ATAAGCGCGTGGCGTCGTTCGCTGTCAGC back to top protein sequence of NO03G05320.1
>NO03G05320.1-protein ID=NO03G05320.1-protein|Name=NO03G05320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=744bp MGLVRRQGRPAGKGKVKAKKWGGGDGNKKAVAAFTNNKSKGKASSSSSSA GPKQPRRRPQDIYEYTDEDTARHRRPRDDEDDGNSKYNFVPGGDDEEIDE DGAFDSEDEKRYGDLMRQIEENDETRKKRRRSDRGEESEEEDEDEEMDAD PEEGEMSLSDMLGGGGKAGGGKLEQEQKKKSKKAAMEQEEEKDMEEEEEE EEEEEEEDEDDEEEEEEGEEEEDDDEEGDHDGLMDMITQLAATQQQQQAS SSSSFSSSSAANQALQSFPDSLFATGPASGLTMEAMLNALENTKGYGNVR RRLSALVQDGKTAIQAPAPSTVQARAERSLVYKEKKKDVETWLPLIASAR QAESLNFAHNPVLQPSQAALIGKFAPETEMEKAVHDLLVHAKADRETAVE QGEEEDLQARGISPENVKIRRAELAKMRALLFYEQQKRHQANKIKSKAYH RIRKRQRLRAEDTARENLRAVDPAAARKMDEEEAAGRAQERMTLRHKNTS KWAKQVLRAGGGKGSGGLETRRAVTEQILLGEQLRRKAGIREGEREEDEG VEEDESDEEGLEGMDDAQRADVLRKRAAGKVRSLLGEVVEGGKEGGKEGG LMGMKFMTQAVEKQRAKAQAEVEKVLRELEQQEEEEEEEEEEEEEGHVVE EAGRKGGRKDMEGLREGSLQVAGVMWGGREGELRWRDPSLLKEEEEGAVA TVAAVAAALPFLPLDRIRREFKSLGLKRRKPVALLVLPQRLRG* back to top mRNA from alignment at chr3:1517236..1519564+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05320.1 ID=NO03G05320.1|Name=NO03G05320.1|organism=Nannochloropsis oceanica|type=mRNA|length=2329bp|location=Sequence derived from alignment at chr3:1517236..1519564+ (Nannochloropsis oceanica) ACAGCAAATCAAAAACCCCACGAATGGGCTTGGTGCGACGACAAGGCCGG
CCGGCAGGTAAGGGCAAAGTCAAAGCTAAGAAGTGGGGTGGCGGCGATGG
CAACAAGAAAGCGGTGGCCGCTTTCACCAATAACAAGAGCAAGGGGAAGG
CCAGTAGCAGTAGCAGCAGCGCAGGCCCGAAGCAGCCGCGGCGACGGCCG
CAGGACATCTACGAGTACACGGACGAGGATACGGCACGCCATCGTCGGCC
TAGGGATGACGAGGACGATGGGAATTCCAAGTACAATTTTGTGCCAGGGG
GGGACGACGAGGAGATCGACGAGGATGGGGCGTTTGACTCGGAAGACGAG
AAACGTTATGGGGATTTGATGCGGCAGATCGAGGAGAACGACGAGACACG
GAAGAAGAGGAGGCGCAGCGATCGTGGTGAAGAAAGTGAAGAGGAGGACG
AGGACGAGGAGATGGATGCAGATCCCGAGGAAGGAGAGATGAGCTTGTCG
GACATGCTGGGTGGAGGTGGAAAGGCAGGAGGAGGGAAATTGGAGCAGGA
GCAGAAGAAGAAAAGTAAAAAGGCTGCTATGGAGCAGGAGGAGGAAAAGG
ATATGGAGGAAGAGGAAGAAGAGGAGGAGGAGGAAGAAGAGGAGGACGAG
GACGACGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGATGACGACGA
GGAAGGAGACCACGACGGTCTGATGGACATGATCACCCAGCTGGCAGCCA
CGCAGCAACAGCAACAAGCGTCTTCTTCCTCTTCTTTCTCATCCTCCTCC
GCAGCCAACCAGGCGCTCCAGTCATTTCCCGACTCCCTCTTTGCCACCGG
CCCTGCCTCCGGCCTGACCATGGAGGCCATGCTCAATGCCCTGGAGAACA
CAAAAGGTTACGGCAACGTCCGTCGACGCCTCTCCGCCCTAGTCCAAGAC
GGCAAGACTGCGATCCAAGCCCCCGCGCCCTCAACTGTCCAAGCCCGTGC
AGAACGTTCCCTCGTATACAAGGAGAAGAAAAAAGACGTCGAAACCTGGC
TTCCCCTCATCGCCTCCGCCCGCCAAGCCGAATCCCTCAATTTCGCGCAT
AACCCAGTCCTCCAACCGTCCCAAGCGGCCTTAATTGGTAAGTTTGCACC
AGAAACGGAAATGGAAAAGGCCGTGCACGACCTCCTCGTCCATGCCAAAG
CGGACCGAGAAACAGCAGTCGAGCAAGGGGAAGAGGAGGACCTGCAGGCC
CGCGGCATCTCTCCTGAAAACGTCAAGATCCGTCGGGCGGAGTTGGCCAA
GATGCGTGCCCTGCTGTTTTACGAGCAGCAAAAGAGGCATCAAGCGAATA
AAATCAAGTCCAAGGCTTACCATCGCATCCGAAAGCGACAGCGGCTTCGG
GCCGAGGACACGGCGCGAGAGAATCTCCGCGCGGTCGACCCGGCTGCGGC
CCGTAAGATGGACGAGGAGGAGGCAGCAGGGAGGGCACAAGAAAGGATGA
CACTAAGGCATAAAAATACAAGCAAGTGGGCGAAGCAGGTGCTTCGGGCG
GGAGGGGGGAAGGGGTCGGGAGGGCTGGAGACACGACGGGCTGTAACGGA
ACAGATCTTGCTGGGGGAGCAGTTGAGGAGGAAGGCGGGAATCAGGGAGG
GGGAAAGGGAGGAGGATGAGGGAGTGGAGGAGGATGAGAGTGATGAGGAG
GGGTTGGAAGGGATGGACGATGCACAGAGGGCGGATGTGCTGAGGAAGAG
AGCGGCCGGGAAGGTGAGGTCGTTGCTCGGGGAGGTGGTGGAAGGAGGTA
AGGAGGGAGGGAAGGAGGGAGGGCTGATGGGTATGAAATTTATGACCCAG
GCGGTGGAGAAGCAGAGGGCTAAAGCTCAGGCAGAGGTGGAAAAGGTTTT
GAGGGAACTGGAGCAGCAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGGACATGTGGTGGAAGAGGCGGGGAGGAAGGGAGGGAGGAAG
GACATGGAGGGTTTGAGGGAGGGGTCGTTGCAGGTGGCAGGGGTGATGTG
GGGGGGCAGGGAGGGCGAGTTAAGGTGGCGGGACCCATCACTGTTGAAGG
AGGAGGAGGAGGGAGCGGTGGCAACAGTGGCAGCAGTAGCAGCGGCTCTG
CCTTTCCTTCCATTGGACAGGATTCGACGGGAGTTCAAGAGCCTCGGCTT
AAAGAGGCGCAAGCCCGTGGCCCTGTTAGTTTTGCCACAGAGGTTAAGAG
GGTAG CAGTAGCTGCAGTAGGAGCAGCGGCAGGAGCAGCAGCAGCGGTGC
ATAAGCGCGTGGCGTCGTTCGCTGTCAGC back to top Coding sequence (CDS) from alignment at chr3:1517236..1519564+
>NO03G05320.1 ID=NO03G05320.1|Name=NO03G05320.1|organism=Nannochloropsis oceanica|type=CDS|length=2232bp|location=Sequence derived from alignment at chr3:1517236..1519564+ (Nannochloropsis oceanica) ATGGGCTTGGTGCGACGACAAGGCCGGCCGGCAGGTAAGGGCAAAGTCAA AGCTAAGAAGTGGGGTGGCGGCGATGGCAACAAGAAAGCGGTGGCCGCTT TCACCAATAACAAGAGCAAGGGGAAGGCCAGTAGCAGTAGCAGCAGCGCA GGCCCGAAGCAGCCGCGGCGACGGCCGCAGGACATCTACGAGTACACGGA CGAGGATACGGCACGCCATCGTCGGCCTAGGGATGACGAGGACGATGGGA ATTCCAAGTACAATTTTGTGCCAGGGGGGGACGACGAGGAGATCGACGAG GATGGGGCGTTTGACTCGGAAGACGAGAAACGTTATGGGGATTTGATGCG GCAGATCGAGGAGAACGACGAGACACGGAAGAAGAGGAGGCGCAGCGATC GTGGTGAAGAAAGTGAAGAGGAGGACGAGGACGAGGAGATGGATGCAGAT CCCGAGGAAGGAGAGATGAGCTTGTCGGACATGCTGGGTGGAGGTGGAAA GGCAGGAGGAGGGAAATTGGAGCAGGAGCAGAAGAAGAAAAGTAAAAAGG CTGCTATGGAGCAGGAGGAGGAAAAGGATATGGAGGAAGAGGAAGAAGAG GAGGAGGAGGAAGAAGAGGAGGACGAGGACGACGAGGAGGAGGAGGAGGA GGGGGAGGAGGAGGAGGATGACGACGAGGAAGGAGACCACGACGGTCTGA TGGACATGATCACCCAGCTGGCAGCCACGCAGCAACAGCAACAAGCGTCT TCTTCCTCTTCTTTCTCATCCTCCTCCGCAGCCAACCAGGCGCTCCAGTC ATTTCCCGACTCCCTCTTTGCCACCGGCCCTGCCTCCGGCCTGACCATGG AGGCCATGCTCAATGCCCTGGAGAACACAAAAGGTTACGGCAACGTCCGT CGACGCCTCTCCGCCCTAGTCCAAGACGGCAAGACTGCGATCCAAGCCCC CGCGCCCTCAACTGTCCAAGCCCGTGCAGAACGTTCCCTCGTATACAAGG AGAAGAAAAAAGACGTCGAAACCTGGCTTCCCCTCATCGCCTCCGCCCGC CAAGCCGAATCCCTCAATTTCGCGCATAACCCAGTCCTCCAACCGTCCCA AGCGGCCTTAATTGGTAAGTTTGCACCAGAAACGGAAATGGAAAAGGCCG TGCACGACCTCCTCGTCCATGCCAAAGCGGACCGAGAAACAGCAGTCGAG CAAGGGGAAGAGGAGGACCTGCAGGCCCGCGGCATCTCTCCTGAAAACGT CAAGATCCGTCGGGCGGAGTTGGCCAAGATGCGTGCCCTGCTGTTTTACG AGCAGCAAAAGAGGCATCAAGCGAATAAAATCAAGTCCAAGGCTTACCAT CGCATCCGAAAGCGACAGCGGCTTCGGGCCGAGGACACGGCGCGAGAGAA TCTCCGCGCGGTCGACCCGGCTGCGGCCCGTAAGATGGACGAGGAGGAGG CAGCAGGGAGGGCACAAGAAAGGATGACACTAAGGCATAAAAATACAAGC AAGTGGGCGAAGCAGGTGCTTCGGGCGGGAGGGGGGAAGGGGTCGGGAGG GCTGGAGACACGACGGGCTGTAACGGAACAGATCTTGCTGGGGGAGCAGT TGAGGAGGAAGGCGGGAATCAGGGAGGGGGAAAGGGAGGAGGATGAGGGA GTGGAGGAGGATGAGAGTGATGAGGAGGGGTTGGAAGGGATGGACGATGC ACAGAGGGCGGATGTGCTGAGGAAGAGAGCGGCCGGGAAGGTGAGGTCGT TGCTCGGGGAGGTGGTGGAAGGAGGTAAGGAGGGAGGGAAGGAGGGAGGG CTGATGGGTATGAAATTTATGACCCAGGCGGTGGAGAAGCAGAGGGCTAA AGCTCAGGCAGAGGTGGAAAAGGTTTTGAGGGAACTGGAGCAGCAGGAAG AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGACATGTGGTGGAA GAGGCGGGGAGGAAGGGAGGGAGGAAGGACATGGAGGGTTTGAGGGAGGG GTCGTTGCAGGTGGCAGGGGTGATGTGGGGGGGCAGGGAGGGCGAGTTAA GGTGGCGGGACCCATCACTGTTGAAGGAGGAGGAGGAGGGAGCGGTGGCA ACAGTGGCAGCAGTAGCAGCGGCTCTGCCTTTCCTTCCATTGGACAGGAT TCGACGGGAGTTCAAGAGCCTCGGCTTAAAGAGGCGCAAGCCCGTGGCCC TGTTAGTTTTGCCACAGAGGTTAAGAGGGTAG back to top