NO03G04730.1, NO03G04730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04730.1
Unique NameNO03G04730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length989
Alignment locationchr3:1346674..1347792 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1346674..1347792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO03G04730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04730NO03G04730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04730.1NO03G04730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04730.1.cds1NO03G04730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04730.1.cds2NO03G04730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04730.1 ID=NO03G04730.1|Name=NO03G04730.1|organism=Nannochloropsis oceanica|type=mRNA|length=989bp
TGGGCTGGTGAAGCTTGTGATTCAGGATGATGATGCTTTCTGCTCTCCAA
AAGACACGTCGTTCCGACTCACAGATCCTCCCCGCGCGACAGCGCCAGAC
CTAAGTGGGAGTTGCTACATTGCGCTAACCGTGCCAGATATCCTTACGAG
GTCCGTGGACAGATATGGTGGCAAGAAGATAGCCTGGCCAGCCATACCGC
CAGCAGCACTTTCCCCTCGCCAACTCTCGCGCTTTCCGGCTAACTCAATC
GGCTCACTCCCTGACATAACCCAGTACGCTCACTCATGTCACAATTCATG
TCACAAGCTTTTCACGCCCCCACACTCTATCGCAGTGCCCAGAGCGTGGC
TCAACGAACCCTGCATCAAACGTTGCCAAAATAAAAGCCACTACCAACCT
CCCCAGCTCTCCTCTGCCTCCTCTCCTCATACACCCACACGAGGCGAGTG
GGGCACGGCTGGTTGGCTTTTCTGACGCGACGTATCAAAATATTCATGTC
TTCTGCCTCTTCGTCGTGGAACCGTACTGGAGCTGCCATCCCTGCCTCAT
TTCCAAAGACATCCCAGCAGGAGGCCTCGAAGGAGGAGGGCCGAGAATTG
GAAACCTCAAGGGAGATGGTGAGGGAGCCGGGGTTGAATTTGCTGGTGGA
GGGAGGAGGAAAGGGAGATGAAGCAGGAAAGATTCCGCCGTTGGGACCAG
TGGGGGTGGGAGGGGAAGCAGTGCAGGCCTCGGATGACTCCAAGCCCATC
TTCAAAGACACCGCGTTCCTAAGACCCGAGCGCATTGTCCTGCGCATCCC
GCGAGCCAGTGTTAATACCAAGCTTAGGTGAATGAAAGGACTTTTAAAGC
ATATCATACGAAGAAGATAGGACGATTTCAGACTAGAGACATACACATGT
TTGTCATATTTTGGTTTTGACCCGAAGACCACATGAAAAGCACGCACGGC
CTTCCATCATTCGAAAAAAAAATGAGGCATGTCATTACA
back to top

protein sequence of NO03G04730.1

>NO03G04730.1-protein ID=NO03G04730.1-protein|Name=NO03G04730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MSSASSSWNRTGAAIPASFPKTSQQEASKEEGRELETSREMVREPGLNLL
VEGGGKGDEAGKIPPLGPVGVGGEAVQASDDSKPIFKDTAFLRPERIVLR
IPRASVNTKLR*
back to top

mRNA from alignment at chr3:1346674..1347792+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04730.1 ID=NO03G04730.1|Name=NO03G04730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1119bp|location=Sequence derived from alignment at chr3:1346674..1347792+ (Nannochloropsis oceanica)
TGGGCTGGTGAAGCTTGTGATTCAGGATGATGATGCTTTCTGCTCTCCAA
AAGACACGTCGTTCCGACTCACAGATCCTCCCCGCGCGACAGCGCCAGAC
CTAAGTGGGAGTTGCTACATTGCGCTAACCGTGCCAGATATCCTTACGAG
GTCCGTGGACAGATATGGTGGCAAGAAGATAGCCTGGCCAGCCATACCGC
CAGCAGCACTTTCCCCTCGCCAACTCTCGCGCTTTCCGGCTAACTCAATC
GGCTCACTCCCTGACATAACCCAGTACGCTCACTCATGTCACAATTCATG
TCACAAGCTTTTCACGCCCCCACACTCTATCGCAGTGCCCAGAGCGTGGC
TCAACGAACCCTGCATCAAACGTTGCCAAAATAAAAGCCACTACCAACCT
CCCCAGCTCTCCTCTGCCTCCTCTCCTCATACACCCACACGAGGCGAGTG
GGGCACGGCTGGTTGGCTTTTCTGACGCGACGTATCAAAATATTCATGTC
TTCTGCCTCTTCGTCGTGGAACCGTACTGGAGCTGCCATCCCTGCCTCAT
TTCCAAAGACATCCCAGCAGGAGGCCTCGAAGGAGGAGGGCCGAGAATTG
GAAACCTCAAGGGAGATGGTGAGGGAGCCGGGGTTGAATTTGCTGGTGGA
GGGAGGAGGAAAGGGAGATGAAGCAGGAAAGATTCCGCCGTTGGGACCAG
TGGGGGTGGGAGGGGAAGCAGTGCAGGCCTCGGATGACTCCAAGCCCATC
TTCAAAGACACCGCGTTCCTAAGTACGTATCGACTGTTTTTTTCCTTATC
TCGACTTAATCATTCAAGTACATCACGATTTAAATTGATGCTTTCCCCTA
CCATCCCGCCTATATCCTTAATACTCCCTTGTCTCGACCACCAAAATCAT
AGGACCCGAGCGCATTGTCCTGCGCATCCCGCGAGCCAGTGTTAATACCA
AGCTTAGGTGAATGAAAGGACTTTTAAAGCATATCATACGAAGAAGATAG
GACGATTTCAGACTAGAGACATACACATGTTTGTCATATTTTGGTTTTGA
CCCGAAGACCACATGAAAAGCACGCACGGCCTTCCATCATTCGAAAAAAA
AATGAGGCATGTCATTACA
back to top

Coding sequence (CDS) from alignment at chr3:1346674..1347792+

>NO03G04730.1 ID=NO03G04730.1|Name=NO03G04730.1|organism=Nannochloropsis oceanica|type=CDS|length=336bp|location=Sequence derived from alignment at chr3:1346674..1347792+ (Nannochloropsis oceanica)
ATGTCTTCTGCCTCTTCGTCGTGGAACCGTACTGGAGCTGCCATCCCTGC
CTCATTTCCAAAGACATCCCAGCAGGAGGCCTCGAAGGAGGAGGGCCGAG
AATTGGAAACCTCAAGGGAGATGGTGAGGGAGCCGGGGTTGAATTTGCTG
GTGGAGGGAGGAGGAAAGGGAGATGAAGCAGGAAAGATTCCGCCGTTGGG
ACCAGTGGGGGTGGGAGGGGAAGCAGTGCAGGCCTCGGATGACTCCAAGC
CCATCTTCAAAGACACCGCGTTCCTAAGACCCGAGCGCATTGTCCTGCGC
ATCCCGCGAGCCAGTGTTAATACCAAGCTTAGGTGA
back to top
Synonyms
Publications