NO03G04620.1, NO03G04620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04620.1
Unique NameNO03G04620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1026
Alignment locationchr3:1325810..1327222 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1325810..1327222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04620.1 vs.
Match: EWM29887.1 (hypothetical protein Naga_100035g34 [Nannochloropsis gaditana])

HSP 1 Score: 67.8 bits (164), Expect = 5.200e-8
Identity = 74/236 (31.36%), Postives = 108/236 (45.76%), Query Frame = 0 
Query:   30 VDIITNKKVACSSAKKKL---KPSTTRRRVTIVASKQSSRLNVDAAQSDNTRKVVMTVLKSGSSGSTNINSA---VQLHVKPRVVVNTTKNLEVGRAVFHGDQKMLQKDVTNHKIS----GMAAARLRGAAGAVRGGGKVSNMTSSSKNTAIGK-------------------SSVNNRSSSNNSSSKSTTALATAKLIVSAGSHPKNSDIKQLLGAYEKGWVADKTFALELQRLL 237
            V + T K  A   AK+K     PS T+R V  V        N   A+    R++V     +   G  + + +   VQL+VKP+ +   T+    G+      Q +     T  ++S       A +  G AG   G   + +  S S NT + K                   + VNN S+++   SK+  A+A+A LI S GSHP+  D+ QLL AY+KGWVAD TF+ ELQ+LL
Sbjct:   39 VSMNTPKASAAKDAKRKQFMKAPSGTQRIVMAVN-------NQPTAKPQPLRRIVQVRYGNSVKGIKDGHGSKRGVQLYVKPQAI---TRKKSFGKRSEEAGQTLEATGSTGGRMSIAPHRATARKTIGVAGPRVGVKFLLDNNSDSSNTQVKKFHPINHAKRDGLTTYSGRTAMVNNESNNSTRDSKNAIAVASATLISSTGSHPRKKDVTQLLAAYKKGWVADTTFSQELQKLL 264
The following BLAST results are available for this feature:
BLAST of NO03G04620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29887.15.200e-831.36hypothetical protein Naga_100035g34 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04620NO03G04620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04620.1NO03G04620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04620.1.cds1NO03G04620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04620.1.cds2NO03G04620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04620.1.cds3NO03G04620.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04620.1.cds4NO03G04620.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04620.1 ID=NO03G04620.1|Name=NO03G04620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp
CCGTTTTTGGTCCTTCGCGATTCGCTACATTCAAAGCTAGGACGTAAAAA
TGTTGCTCAGTGTCAAGCCATATTGACTCCCGGCTTAAAGCACAGCCTTG
GTCACAGTCACACATATAACTCTTACATAGGTACGCTTCTCCTAGACAAG
ACATGGTTGCGCGCCAGGTTTCGCTCGTGACAGGAGAAGGCAGGTCCAAG
GGCAAGGGTAGTCGCCGCAGCAAATTACATGCCATTTCAGTGGACATAAT
TACGAACAAGAAAGTTGCCTGCAGCAGTGCCAAGAAAAAGCTGAAGCCCT
CCACCACTAGGCGCCGTGTCACCATTGTGGCAAGCAAGCAATCCTCCAGG
CTCAACGTCGATGCCGCCCAAAGTGACAACACGCGGAAAGTGGTGATGAC
TGTTCTGAAATCCGGTAGCAGTGGGAGTACAAACATTAATAGCGCTGTCC
AACTGCACGTAAAACCCCGGGTGGTAGTCAACACCACTAAGAATCTGGAA
GTTGGAAGAGCGGTATTTCACGGTGATCAAAAGATGTTACAGAAGGACGT
CACAAATCACAAGATCAGTGGGATGGCCGCGGCACGTTTACGGGGAGCGG
CTGGAGCAGTCCGAGGCGGAGGGAAGGTCAGCAACATGACCAGCAGCAGC
AAAAACACTGCGATAGGAAAAAGCAGTGTAAACAACAGGAGTAGTAGCAA
CAACAGCAGCAGCAAGAGTACCACGGCGTTGGCGACAGCCAAGTTGATCG
TGTCGGCAGGGAGCCACCCCAAGAATTCGGACATCAAGCAGTTACTGGGC
GCGTACGAGAAGGGATGGGTGGCAGATAAGACCTTCGCGCTGGAGCTCCA
GAGACTGCTCGTCTGAATCTTTGAACGGGGGTGGAAATAGGGGGGAGTGA
TCATGAAAGAGAGGGGGCATGTGCATAGCAAATAAAGTCCGATACTGGCA
GCTCCATAAATTCAAGCAAAGAAGAAGCAATGTGATAATTAAATTCAATA
AGTGATTGTATTACTCTTGTTTGGCG
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protein sequence of NO03G04620.1

>NO03G04620.1-protein ID=NO03G04620.1-protein|Name=NO03G04620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MVARQVSLVTGEGRSKGKGSRRSKLHAISVDIITNKKVACSSAKKKLKPS
TTRRRVTIVASKQSSRLNVDAAQSDNTRKVVMTVLKSGSSGSTNINSAVQ
LHVKPRVVVNTTKNLEVGRAVFHGDQKMLQKDVTNHKISGMAAARLRGAA
GAVRGGGKVSNMTSSSKNTAIGKSSVNNRSSSNNSSSKSTTALATAKLIV
SAGSHPKNSDIKQLLGAYEKGWVADKTFALELQRLLV*
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mRNA from alignment at chr3:1325810..1327222+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04620.1 ID=NO03G04620.1|Name=NO03G04620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp|location=Sequence derived from alignment at chr3:1325810..1327222+ (Nannochloropsis oceanica)
CCGTTTTTGGTCCTTCGCGATTCGCTACATTCAAAGCTAGGACGTAAAAA
TGTTGCTCAGTGTCAAGCCATATTGACTCCCGGCTTAAAGCACAGCCTTG
GTCACAGTCACACATATAACTCTTACATAGGTACGCTTCTCCTAGACAAG
ACATGGTTGCGCGCCAGGTTTCGCTCGTGACAGGTAAGTCGTGTGCGGAG
AGTAACAATGATGATAAAGCTGCCGTTCTGCCTCATATGCTTCCCTCCCA
CCAGGAGAAGGCAGGTCCAAGGGCAAGGGTAGTCGCCGCAGCAAATTACA
TGCCATTTCAGTGGACATAATTACGAACAAGAAAGTTGCCTGCAGCAGTG
CCAAGAAAAAGCTGAAGCCCTCCACCACTAGGCGCCGTGTCACCATTGTG
GCAAGGTAAGTCCCGGGGGCCTGGAAGTCAAAAAGCTTTCCGCCGATGAG
TCGCAGACACGCCAGCAATGCGACATTCCTTTCGATTCTTCGTTTCTACT
TGAGAGCGCCATTGTATGTGCTAAATCTAGAGCGTAGCACGCCTTCCCAA
TAATCCCCCAAAAAGTGTCCTTTCGTTCGCGTTCGTGTTCTTACATCCAC
GCGTTCCCCTTACAAACATACAGCAAGCAATCCTCCAGGCTCAACGTCGA
TGCCGCCCAAAGTGACAACACGCGGAAAGTGGTGATGACTGTTCTGAAAT
CCGGTAGCAGTGGGAGTACAAACATTAATAGCGCTGTCCAACTGCACGTA
AAACCCCGGGTGGTAGTCAACACCACTAAGAATCTGGAAGTTGGAAGAGC
GGTATTTCACGGTGATCAAAAGATGTTACAGAAGGACGTCACAAATCACA
AGATCAGTGGGATGGCCGCGGCACGTTTACGGGGAGCGGCTGGAGCAGTC
CGAGGCGGAGGGAAGGTCAGCAACATGACCAGCAGCAGCAAAAACACTGC
GATAGGAAAAAGCAGTGTAAACAACAGGAGTAGTAGCAACAACAGCAGCA
GCAAGAGTACCACGGCGTTGGCGACAGCCAAGTTGATCGTGTCGGCAGGG
AGCCACCCCAAGAATTCGGACATCAAGCAGGTGCGTCTTGGGGCACATGG
TAACCCGGGGAGAGGAGGTTAGATTTTTCAAAATCACATCATGACTGGCA
TTATTTCACACACAAATATCCTAAACAGTTACTGGGCGCGTACGAGAAGG
GATGGGTGGCAGATAAGACCTTCGCGCTGGAGCTCCAGAGACTGCTCGTC
TGAATCTTTGAACGGGGGTGGAAATAGGGGGGAGTGATCATGAAAGAGAG
GGGGCATGTGCATAGCAAATAAAGTCCGATACTGGCAGCTCCATAAATTC
AAGCAAAGAAGAAGCAATGTGATAATTAAATTCAATAAGTGATTGTATTA
CTCTTGTTTGGCG
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Coding sequence (CDS) from alignment at chr3:1325810..1327222+

>NO03G04620.1 ID=NO03G04620.1|Name=NO03G04620.1|organism=Nannochloropsis oceanica|type=CDS|length=714bp|location=Sequence derived from alignment at chr3:1325810..1327222+ (Nannochloropsis oceanica)
ATGGTTGCGCGCCAGGTTTCGCTCGTGACAGGAGAAGGCAGGTCCAAGGG
CAAGGGTAGTCGCCGCAGCAAATTACATGCCATTTCAGTGGACATAATTA
CGAACAAGAAAGTTGCCTGCAGCAGTGCCAAGAAAAAGCTGAAGCCCTCC
ACCACTAGGCGCCGTGTCACCATTGTGGCAAGCAAGCAATCCTCCAGGCT
CAACGTCGATGCCGCCCAAAGTGACAACACGCGGAAAGTGGTGATGACTG
TTCTGAAATCCGGTAGCAGTGGGAGTACAAACATTAATAGCGCTGTCCAA
CTGCACGTAAAACCCCGGGTGGTAGTCAACACCACTAAGAATCTGGAAGT
TGGAAGAGCGGTATTTCACGGTGATCAAAAGATGTTACAGAAGGACGTCA
CAAATCACAAGATCAGTGGGATGGCCGCGGCACGTTTACGGGGAGCGGCT
GGAGCAGTCCGAGGCGGAGGGAAGGTCAGCAACATGACCAGCAGCAGCAA
AAACACTGCGATAGGAAAAAGCAGTGTAAACAACAGGAGTAGTAGCAACA
ACAGCAGCAGCAAGAGTACCACGGCGTTGGCGACAGCCAAGTTGATCGTG
TCGGCAGGGAGCCACCCCAAGAATTCGGACATCAAGCAGTTACTGGGCGC
GTACGAGAAGGGATGGGTGGCAGATAAGACCTTCGCGCTGGAGCTCCAGA
GACTGCTCGTCTGA
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Synonyms
Publications