NO03G04330.1, NO03G04330.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G04330.1
Unique Name	NO03G04330.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1914
Alignment location	chr3:1249551..1251464 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:1249551..1251464 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO03G04330.1 vs.
Match: EWM29815.1 (iduronate 2-sulfatase [Nannochloropsis gaditana])

HSP 1 Score: 779.2 bits (2011), Expect = 9.500e-222
Identity = 390/585 (66.67%), Postives = 454/585 (77.61%), Query Frame = 0

Query:   41 TSKLFCQGQGIGKEATPSLATSTSTSSSSTLPP-PVKNILYIIVDDLTADLALFGGKVNQVPMPNLEGRLAPRAVNFLRSYAQQSICGPSRNSFLSGRHPDETQTYTFRRSFRDAFPDAVSLPQAFKNAGFLTCGFGKTYHDEGIKSPPDYDNPYSWSPECPYYAPPEEKCGPDHHGWCTPDMPEGNFTDGLVTEAAIERLRAHVNFFKQQQQQHQHQHQQQQPFFFAVGIRKPHLDWAVPRAYVDAQVVQEHIEIPSNALRVSPPGMPPVSYFNCTMESPWQQAMSEIALSPHEPLEDELEQELRRAYYAAISWMDANVGKLLDALVELGLEESTSIVFHSDHGFHLSEEGMWCKQNTREIGTRVPLLISTPSLSTSSKKPAALAAPTEQVAAGEMHSNAIVQLVDIYPTLLELAGLALPDLSLRGTSLVPLLRYAQVAGNSTAAAAAAAAAADGFVAAFSQYPRCLSTPLAPSGLAHEGFLWNRQCAMLGNEKIDVMGYSIRVEGWRYTEWYQWEGRRSRPRWSAEGQVAVELYEMDKGRQEG------KEEDVTPNVVEDGRFQDVRARLSRILYEHFSSLQ 619
            T  LF  G GIG  A P+  +   TS  +      VKNILYII+DDLTADL+LFGGK++Q P+PNL+ RLAPRAVNFLR+YAQQS+CGPSRNSFLSGRHPDETQ+YTF+ SFRD  PDAVSLPQAFKNAG+LTCGFGKT+HD+GI SPPDYDNPYSWSPECPYYAP E+ CG   HGWCTPDMPEGNFTDGLV +AAIERLR HV+           + +  +PFFFAVGIRKPHLDWAVP+AY DAQV    + +PS+++RV+PPGMP V+Y+NC+ E PW+ AM EI LSPHEPL+DELE+ELRRAYYAA++WMDANVGKLLDAL ELGL+E+T+IVFHSDHGFHLSEEGMWCKQNTREIGTRVPLL+S P L+  S+   A     ++  AG   S AIVQLVDIYPTLL+LAGL LPD ++RG SL+PL+R     GN T  A        GF AAFSQYPRC ST LAPSGLA +G+ WNRQCA L N+KIDVMGYS+RVEGWRYTEWY WE RR+RPRW+A G VAVELY MD  R +G       E+ V  NV  D R++  +  LS++LY+HFSS Q
Sbjct:   32 TLTLFGHGFGIGVAAAPATTSCNPTSPCAENGSLAVKNILYIIIDDLTADLSLFGGKIDQAPIPNLQHRLAPRAVNFLRAYAQQSVCGPSRNSFLSGRHPDETQSYTFKTSFRDTLPDAVSLPQAFKNAGYLTCGFGKTFHDDGIPSPPDYDNPYSWSPECPYYAPEEDFCGEGQHGWCTPDMPEGNFTDGLVVDAAIERLRGHVH-------AQSVEGRGDRPFFFAVGIRKPHLDWAVPKAYFDAQVSLRDVRLPSDSVRVAPPGMPAVAYYNCSTEPPWKLAMPEIVLSPHEPLQDELERELRRAYYAAVTWMDANVGKLLDALTELGLDENTAIVFHSDHGFHLSEEGMWCKQNTREIGTRVPLLVSAPGLTVPSE---ARREKEQRETAG--LSEAIVQLVDIYPTLLDLAGLTLPDPNMRGRSLIPLMRRWGSGGNETENAT-------GFGAAFSQYPRCASTSLAPSGLASQGYRWNRQCAWLENDKIDVMGYSVRVEGWRYTEWYTWEARRARPRWNAAGLVAVELYAMDMSRGKGVMEEMKMEDKVARNVANDVRYRQEQEHLSKLLYDHFSSFQ 597

The following BLAST results are available for this feature:

BLAST of NO03G04330.1 vs.

BLAST of NO03G04330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29815.1	9.500e-222	66.67	iduronate 2-sulfatase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G04330	NO03G04330	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G04330.1	NO03G04330.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G04330.1.cds1	NO03G04330.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:1249551..1251464-
coding sequence from alignment at chr3:1249551..1251464-

mRNA sequence

>NO03G04330.1 ID=NO03G04330.1|Name=NO03G04330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1914bp
ATGGCAAGCATTGTGACCCGGAACCCTGGAGTGCTTGCCCCACGACACCC
TCCCATCGTCCTGCGTCTCATCCTCGGCCTTCTACTGATCCTTTTGGACG
TTCCCATACACCCCACGACGACATCGAAGCTGTTCTGTCAAGGTCAAGGT
ATTGGCAAGGAGGCCACTCCCTCGCTCGCAACCTCCACCTCCACCTCCTC
TTCTTCTACCCTCCCTCCTCCGGTGAAAAACATATTGTACATAATTGTCG
ACGACCTTACTGCCGACTTGGCCCTTTTTGGGGGCAAGGTTAATCAAGTG
CCAATGCCAAACCTAGAAGGTCGTCTAGCTCCACGCGCCGTAAACTTCCT
CCGCTCATACGCCCAGCAAAGCATCTGTGGGCCCTCGCGCAACTCCTTCT
TGTCCGGACGACACCCAGACGAGACTCAAACCTATACGTTTCGACGAAGC
TTTAGGGATGCGTTTCCAGACGCCGTGTCACTGCCTCAAGCCTTTAAAAA
CGCGGGGTTTCTGACATGCGGGTTTGGCAAGACATACCATGACGAGGGCA
TCAAGAGCCCCCCAGATTACGACAACCCGTACTCGTGGTCACCCGAGTGC
CCCTATTACGCTCCCCCCGAGGAAAAGTGTGGTCCGGATCACCATGGTTG
GTGCACGCCGGACATGCCCGAAGGCAATTTCACTGATGGTCTGGTCACCG
AGGCGGCCATAGAACGGTTGCGAGCGCATGTAAACTTCTTCAAGCAGCAA
CAGCAACAGCATCAGCATCAGCATCAGCAGCAGCAGCCATTCTTCTTCGC
GGTGGGCATTCGTAAGCCACATCTTGATTGGGCGGTACCCAGAGCGTACG
TCGATGCACAGGTTGTTCAGGAACACATTGAAATTCCCTCCAATGCTCTT
CGTGTGAGTCCTCCCGGGATGCCACCCGTATCTTATTTCAATTGTACTAT
GGAAAGTCCGTGGCAGCAGGCGATGAGTGAAATCGCTCTATCGCCGCACG
AGCCGCTTGAGGACGAATTAGAGCAGGAGTTGCGACGTGCTTACTATGCA
GCAATTTCGTGGATGGACGCGAATGTAGGCAAACTTCTTGATGCGCTGGT
GGAGTTGGGGCTTGAGGAGAGCACGTCCATCGTGTTTCATTCAGACCATG
GCTTTCACTTGTCAGAGGAAGGGATGTGGTGTAAACAAAATACGCGGGAG
ATTGGCACACGTGTGCCCCTGCTAATTTCCACTCCGAGCTTATCGACATC
TAGCAAAAAGCCAGCCGCGTTAGCAGCGCCAACAGAACAAGTAGCAGCAG
GAGAGATGCATTCAAATGCTATTGTACAGCTGGTTGACATTTATCCCACT
TTGCTTGAGCTCGCAGGCCTGGCATTACCTGACCTTAGCCTGCGGGGTAC
GAGTTTGGTGCCCTTGTTGCGGTACGCCCAGGTAGCAGGAAACAGTACTG
CTGCTGCAGCAGCTGCTGCTGCTGCTGCGGATGGTTTTGTCGCGGCCTTC
TCTCAATATCCTCGTTGTTTAAGCACACCGTTGGCGCCCAGTGGATTAGC
ACACGAAGGTTTTCTCTGGAATCGACAATGCGCCATGCTAGGAAATGAGA
AGATTGATGTGATGGGGTATAGTATTCGAGTGGAGGGATGGCGCTACACG
GAGTGGTATCAGTGGGAGGGACGTCGCTCCCGCCCAAGATGGAGTGCGGA
GGGGCAGGTAGCGGTGGAATTGTATGAGATGGATAAAGGAAGGCAAGAGG
GGAAGGAGGAAGATGTCACGCCAAATGTGGTCGAGGATGGTCGATTCCAA
GATGTGCGGGCACGGTTGAGTCGGATTTTGTACGAGCACTTTTCTTCGTT
GCAGAGAGAACAGAAGGAGGGTAAAGAGGTTGGGATCGAGGGAGCCTCTG
TGACTGTTGAGTAG

protein sequence of NO03G04330.1

>NO03G04330.1-protein ID=NO03G04330.1-protein|Name=NO03G04330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=638bp
MASIVTRNPGVLAPRHPPIVLRLILGLLLILLDVPIHPTTTSKLFCQGQG
IGKEATPSLATSTSTSSSSTLPPPVKNILYIIVDDLTADLALFGGKVNQV
PMPNLEGRLAPRAVNFLRSYAQQSICGPSRNSFLSGRHPDETQTYTFRRS
FRDAFPDAVSLPQAFKNAGFLTCGFGKTYHDEGIKSPPDYDNPYSWSPEC
PYYAPPEEKCGPDHHGWCTPDMPEGNFTDGLVTEAAIERLRAHVNFFKQQ
QQQHQHQHQQQQPFFFAVGIRKPHLDWAVPRAYVDAQVVQEHIEIPSNAL
RVSPPGMPPVSYFNCTMESPWQQAMSEIALSPHEPLEDELEQELRRAYYA
AISWMDANVGKLLDALVELGLEESTSIVFHSDHGFHLSEEGMWCKQNTRE
IGTRVPLLISTPSLSTSSKKPAALAAPTEQVAAGEMHSNAIVQLVDIYPT
LLELAGLALPDLSLRGTSLVPLLRYAQVAGNSTAAAAAAAAAADGFVAAF
SQYPRCLSTPLAPSGLAHEGFLWNRQCAMLGNEKIDVMGYSIRVEGWRYT
EWYQWEGRRSRPRWSAEGQVAVELYEMDKGRQEGKEEDVTPNVVEDGRFQ
DVRARLSRILYEHFSSLQREQKEGKEVGIEGASVTVE*

mRNA from alignment at chr3:1249551..1251464-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G04330.1 ID=NO03G04330.1|Name=NO03G04330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1914bp|location=Sequence derived from alignment at chr3:1249551..1251464- (Nannochloropsis oceanica)
ATGGCAAGCATTGTGACCCGGAACCCTGGAGTGCTTGCCCCACGACACCC
TCCCATCGTCCTGCGTCTCATCCTCGGCCTTCTACTGATCCTTTTGGACG
TTCCCATACACCCCACGACGACATCGAAGCTGTTCTGTCAAGGTCAAGGT
ATTGGCAAGGAGGCCACTCCCTCGCTCGCAACCTCCACCTCCACCTCCTC
TTCTTCTACCCTCCCTCCTCCGGTGAAAAACATATTGTACATAATTGTCG
ACGACCTTACTGCCGACTTGGCCCTTTTTGGGGGCAAGGTTAATCAAGTG
CCAATGCCAAACCTAGAAGGTCGTCTAGCTCCACGCGCCGTAAACTTCCT
CCGCTCATACGCCCAGCAAAGCATCTGTGGGCCCTCGCGCAACTCCTTCT
TGTCCGGACGACACCCAGACGAGACTCAAACCTATACGTTTCGACGAAGC
TTTAGGGATGCGTTTCCAGACGCCGTGTCACTGCCTCAAGCCTTTAAAAA
CGCGGGGTTTCTGACATGCGGGTTTGGCAAGACATACCATGACGAGGGCA
TCAAGAGCCCCCCAGATTACGACAACCCGTACTCGTGGTCACCCGAGTGC
CCCTATTACGCTCCCCCCGAGGAAAAGTGTGGTCCGGATCACCATGGTTG
GTGCACGCCGGACATGCCCGAAGGCAATTTCACTGATGGTCTGGTCACCG
AGGCGGCCATAGAACGGTTGCGAGCGCATGTAAACTTCTTCAAGCAGCAA
CAGCAACAGCATCAGCATCAGCATCAGCAGCAGCAGCCATTCTTCTTCGC
GGTGGGCATTCGTAAGCCACATCTTGATTGGGCGGTACCCAGAGCGTACG
TCGATGCACAGGTTGTTCAGGAACACATTGAAATTCCCTCCAATGCTCTT
CGTGTGAGTCCTCCCGGGATGCCACCCGTATCTTATTTCAATTGTACTAT
GGAAAGTCCGTGGCAGCAGGCGATGAGTGAAATCGCTCTATCGCCGCACG
AGCCGCTTGAGGACGAATTAGAGCAGGAGTTGCGACGTGCTTACTATGCA
GCAATTTCGTGGATGGACGCGAATGTAGGCAAACTTCTTGATGCGCTGGT
GGAGTTGGGGCTTGAGGAGAGCACGTCCATCGTGTTTCATTCAGACCATG
GCTTTCACTTGTCAGAGGAAGGGATGTGGTGTAAACAAAATACGCGGGAG
ATTGGCACACGTGTGCCCCTGCTAATTTCCACTCCGAGCTTATCGACATC
TAGCAAAAAGCCAGCCGCGTTAGCAGCGCCAACAGAACAAGTAGCAGCAG
GAGAGATGCATTCAAATGCTATTGTACAGCTGGTTGACATTTATCCCACT
TTGCTTGAGCTCGCAGGCCTGGCATTACCTGACCTTAGCCTGCGGGGTAC
GAGTTTGGTGCCCTTGTTGCGGTACGCCCAGGTAGCAGGAAACAGTACTG
CTGCTGCAGCAGCTGCTGCTGCTGCTGCGGATGGTTTTGTCGCGGCCTTC
TCTCAATATCCTCGTTGTTTAAGCACACCGTTGGCGCCCAGTGGATTAGC
ACACGAAGGTTTTCTCTGGAATCGACAATGCGCCATGCTAGGAAATGAGA
AGATTGATGTGATGGGGTATAGTATTCGAGTGGAGGGATGGCGCTACACG
GAGTGGTATCAGTGGGAGGGACGTCGCTCCCGCCCAAGATGGAGTGCGGA
GGGGCAGGTAGCGGTGGAATTGTATGAGATGGATAAAGGAAGGCAAGAGG
GGAAGGAGGAAGATGTCACGCCAAATGTGGTCGAGGATGGTCGATTCCAA
GATGTGCGGGCACGGTTGAGTCGGATTTTGTACGAGCACTTTTCTTCGTT
GCAGAGAGAACAGAAGGAGGGTAAAGAGGTTGGGATCGAGGGAGCCTCTG
TGACTGTTGAGTAG

Coding sequence (CDS) from alignment at chr3:1249551..1251464-

>NO03G04330.1 ID=NO03G04330.1|Name=NO03G04330.1|organism=Nannochloropsis oceanica|type=CDS|length=1914bp|location=Sequence derived from alignment at chr3:1249551..1251464- (Nannochloropsis oceanica)
ATGGCAAGCATTGTGACCCGGAACCCTGGAGTGCTTGCCCCACGACACCC
TCCCATCGTCCTGCGTCTCATCCTCGGCCTTCTACTGATCCTTTTGGACG
TTCCCATACACCCCACGACGACATCGAAGCTGTTCTGTCAAGGTCAAGGT
ATTGGCAAGGAGGCCACTCCCTCGCTCGCAACCTCCACCTCCACCTCCTC
TTCTTCTACCCTCCCTCCTCCGGTGAAAAACATATTGTACATAATTGTCG
ACGACCTTACTGCCGACTTGGCCCTTTTTGGGGGCAAGGTTAATCAAGTG
CCAATGCCAAACCTAGAAGGTCGTCTAGCTCCACGCGCCGTAAACTTCCT
CCGCTCATACGCCCAGCAAAGCATCTGTGGGCCCTCGCGCAACTCCTTCT
TGTCCGGACGACACCCAGACGAGACTCAAACCTATACGTTTCGACGAAGC
TTTAGGGATGCGTTTCCAGACGCCGTGTCACTGCCTCAAGCCTTTAAAAA
CGCGGGGTTTCTGACATGCGGGTTTGGCAAGACATACCATGACGAGGGCA
TCAAGAGCCCCCCAGATTACGACAACCCGTACTCGTGGTCACCCGAGTGC
CCCTATTACGCTCCCCCCGAGGAAAAGTGTGGTCCGGATCACCATGGTTG
GTGCACGCCGGACATGCCCGAAGGCAATTTCACTGATGGTCTGGTCACCG
AGGCGGCCATAGAACGGTTGCGAGCGCATGTAAACTTCTTCAAGCAGCAA
CAGCAACAGCATCAGCATCAGCATCAGCAGCAGCAGCCATTCTTCTTCGC
GGTGGGCATTCGTAAGCCACATCTTGATTGGGCGGTACCCAGAGCGTACG
TCGATGCACAGGTTGTTCAGGAACACATTGAAATTCCCTCCAATGCTCTT
CGTGTGAGTCCTCCCGGGATGCCACCCGTATCTTATTTCAATTGTACTAT
GGAAAGTCCGTGGCAGCAGGCGATGAGTGAAATCGCTCTATCGCCGCACG
AGCCGCTTGAGGACGAATTAGAGCAGGAGTTGCGACGTGCTTACTATGCA
GCAATTTCGTGGATGGACGCGAATGTAGGCAAACTTCTTGATGCGCTGGT
GGAGTTGGGGCTTGAGGAGAGCACGTCCATCGTGTTTCATTCAGACCATG
GCTTTCACTTGTCAGAGGAAGGGATGTGGTGTAAACAAAATACGCGGGAG
ATTGGCACACGTGTGCCCCTGCTAATTTCCACTCCGAGCTTATCGACATC
TAGCAAAAAGCCAGCCGCGTTAGCAGCGCCAACAGAACAAGTAGCAGCAG
GAGAGATGCATTCAAATGCTATTGTACAGCTGGTTGACATTTATCCCACT
TTGCTTGAGCTCGCAGGCCTGGCATTACCTGACCTTAGCCTGCGGGGTAC
GAGTTTGGTGCCCTTGTTGCGGTACGCCCAGGTAGCAGGAAACAGTACTG
CTGCTGCAGCAGCTGCTGCTGCTGCTGCGGATGGTTTTGTCGCGGCCTTC
TCTCAATATCCTCGTTGTTTAAGCACACCGTTGGCGCCCAGTGGATTAGC
ACACGAAGGTTTTCTCTGGAATCGACAATGCGCCATGCTAGGAAATGAGA
AGATTGATGTGATGGGGTATAGTATTCGAGTGGAGGGATGGCGCTACACG
GAGTGGTATCAGTGGGAGGGACGTCGCTCCCGCCCAAGATGGAGTGCGGA
GGGGCAGGTAGCGGTGGAATTGTATGAGATGGATAAAGGAAGGCAAGAGG
GGAAGGAGGAAGATGTCACGCCAAATGTGGTCGAGGATGGTCGATTCCAA
GATGTGCGGGCACGGTTGAGTCGGATTTTGTACGAGCACTTTTCTTCGTT
GCAGAGAGAACAGAAGGAGGGTAAAGAGGTTGGGATCGAGGGAGCCTCTG
TGACTGTTGAGTAG

Synonyms

Publications