NO03G04310.1, NO03G04310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04310.1
Unique NameNO03G04310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1594
Alignment locationchr3:1244160..1245988 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1244160..1245988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04310.1 vs.
Match: EWM29829.1 (homocysteine s-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 332.0 bits (850), Expect = 2.500e-87
Identity = 168/283 (59.36%), Postives = 204/283 (72.08%), Query Frame = 0 
Query:  119 ITQNQAEDLIRKGVTLAIEARDEFWAPTGGVADEMKKKDSK----RQRPLVAASLGCYGAAQADGSEYRGQYGLTIEELMDWHRPRLALLDTTDADFLAFETIPCESELLAILYLLHEGEDQRKDTHAKSSSSRSRSRKPCWITMACQNGTRLNSGESLEACARHVLALDGSSTSRVVAFGVNCMPPQHVEEALSVIRRTFTSEAAGKEV--------PLLVAYPNLGEIWEDKQWLPGTGSCPTPEGFALSAARWVEAGASIVGGCCRTTPKTIQAVRARLI 390
            +T+ QAEDLIRKGV LAIEARDEFWA         +K +      RQRPLVAAS+GCYGAAQADGSEYRG YGLT+EELMDWHRPRLA+L  TDAD LAFETIPC++E++AIL LL EG +Q         S+ +  R PCWIT+ACQ+ T LNSGESL +C + V ALD  S  +VV  GVNC  PQHVE AL+V+R    + +A KEV         +L+AYPN GE+W+DK+WLPGTG CP+   FA  A +WV AGA ++GGCCRTTP+TI+A+RA L+
Sbjct:    8 VTRAQAEDLIRKGVALAIEARDEFWAAYSREEAGKRKTEEAGGGTRQRPLVAASVGCYGAAQADGSEYRGAYGLTVEELMDWHRPRLAILGETDADLLAFETIPCQAEVVAILQLLREGREQ-------EGSAPTSRRTPCWITLACQDATHLNSGESLVSCVQLVKALDTGSRPQVVGLGVNCCAPQHVEGALTVLREGLLTISAAKEVISAAKGSERILIAYPNSGEVWQDKRWLPGTGVCPSSRDFADLARKWVVAGARVLGGCCRTTPETIKALRACLL 283
The following BLAST results are available for this feature:
BLAST of NO03G04310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29829.12.500e-8759.36homocysteine s-methyltransferase [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04310NO03G04310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04310.1NO03G04310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04310.1.cds1NO03G04310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04310.1.cds2NO03G04310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04310.1.cds3NO03G04310.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04310.1 ID=NO03G04310.1|Name=NO03G04310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1594bp
ACAGGGCATGTGAGGCAGCCATGGCGGTGGCGGCAGCAGCAGCAGAAGCG
GTTGGGTTGTCAAAGGAAAAAGGCTCGGACACGGAGGCAAGCATCGTGAC
GCCAGCCAGCAGCACATGCACTCGTAGGAACCCGTTGGCAGGCCTCTTGG
CGCATCAACGCTACATAATTAATGATGGCGGCATGGGAACACTGCTCGAG
GCCTTGATAGGCATGCCCTTGGACCCATTGTTGTGGTCAGCAGGTTGCGT
CCTAACCCATCCCGATGCCATCAAGGAGGCTCACAAGCAGTATTTTGAGG
CTGGCGCCGACATAGCTACCACTTCCACCTACCAAGCGACAGTGCAAGGG
TACATGCAAAGGGAAAATGATGACATCACGCAAAATCAAGCCGAAGACTT
GATTCGCAAAGGTGTGACCTTGGCCATCGAGGCCCGCGACGAGTTTTGGG
CCCCTACAGGAGGAGTGGCAGATGAGATGAAGAAAAAGGACAGTAAGCGA
CAACGCCCTCTAGTGGCCGCCAGCCTGGGGTGCTACGGCGCGGCCCAAGC
GGACGGCTCTGAATATCGAGGCCAGTACGGGTTGACGATAGAAGAGCTTA
TGGACTGGCACCGTCCCCGTCTTGCCCTTCTCGACACGACAGACGCTGAC
TTTTTGGCATTTGAAACTATCCCTTGCGAATCCGAGCTCCTCGCCATTCT
GTACCTCCTCCACGAAGGAGAAGATCAACGCAAAGACACACATGCCAAGA
GTAGCAGCAGCCGCAGCCGCAGCCGCAAGCCTTGCTGGATTACCATGGCT
TGCCAAAATGGCACACGCCTTAATAGCGGTGAGTCCTTAGAAGCCTGCGC
GCGGCATGTGCTTGCGTTGGACGGTAGCTCAACGTCAAGGGTGGTGGCAT
TTGGAGTCAACTGCATGCCTCCCCAACATGTCGAAGAGGCCCTCTCGGTG
ATCCGGCGCACTTTCACTTCCGAAGCAGCAGGAAAAGAAGTGCCTTTGTT
GGTAGCATATCCCAACTTGGGTGAGATTTGGGAGGACAAACAGTGGCTTC
CGGGGACGGGTTCCTGTCCTACTCCCGAAGGCTTTGCTCTCTCGGCTGCG
CGGTGGGTCGAAGCAGGGGCTTCGATCGTGGGGGGATGTTGCCGGACGAC
GCCCAAAACAATCCAAGCCGTACGGGCACGTCTGATTCCAGTGGAGGAAG
AAGAGAAGCAGGGTGTAAATGACAAGCGAAAGCAAACTTGAAAGACCTTC
ACCTGTATACGGTTATGGCCAAATGGGCCGTCGGGCTTCGGATGGAGAGG
TCGTCTTTGCTTGTCTTTCCTTTGCTTTGGAAGCCGTCGCTACAATATTG
TTTCGACCACCAAACCAAGAAGGTGAATTGCTACGTTTATTTTCGAAGCA
GTGCTCTGCGCTGGTTAGTTGGCAGGCATACTCGGGGCCCAGCTTTCGAA
CCTCCCCTATAAGACAACTTGTTGTTTATAAGGCTTTCCCTCGTAGTGTA
ATTTTTGTAAGGCGGCGGACTTGTGTAAGCATTTGTGTTTACATTTTTTT
GCGGGTAGGTTGCATGCGATAATTTTAGGATCGTAGGAAACTAC
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protein sequence of NO03G04310.1

>NO03G04310.1-protein ID=NO03G04310.1-protein|Name=NO03G04310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MAVAAAAAEAVGLSKEKGSDTEASIVTPASSTCTRRNPLAGLLAHQRYII
NDGGMGTLLEALIGMPLDPLLWSAGCVLTHPDAIKEAHKQYFEAGADIAT
TSTYQATVQGYMQRENDDITQNQAEDLIRKGVTLAIEARDEFWAPTGGVA
DEMKKKDSKRQRPLVAASLGCYGAAQADGSEYRGQYGLTIEELMDWHRPR
LALLDTTDADFLAFETIPCESELLAILYLLHEGEDQRKDTHAKSSSSRSR
SRKPCWITMACQNGTRLNSGESLEACARHVLALDGSSTSRVVAFGVNCMP
PQHVEEALSVIRRTFTSEAAGKEVPLLVAYPNLGEIWEDKQWLPGTGSCP
TPEGFALSAARWVEAGASIVGGCCRTTPKTIQAVRARLIPVEEEEKQGVN
DKRKQT*
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mRNA from alignment at chr3:1244160..1245988-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04310.1 ID=NO03G04310.1|Name=NO03G04310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1829bp|location=Sequence derived from alignment at chr3:1244160..1245988- (Nannochloropsis oceanica)
ACAGGGCATGTGAGGCAGCCATGGCGGTGGCGGCAGCAGCAGCAGAAGCG
GTTGGGTTGTCAAAGGAAAAAGGCTCGGACACGGAGGCAAGCATCGTGAC
GCCAGCCAGCAGCACATGCACTCGTAGGAACCCGTTGGCAGGCCTCTTGG
CGCATCAACGCTACATAATTAATGATGGCGGCATGGGAACACTGCTCGAG
GCCTTGATAGGCATGCCCTTGGACCCATTGTTGTGGTAAGAGTGTGCGAA
TGCGGTGGGGAGTGAGCTGGAGTGCTAGAGCGGCCCGTGGGAAATTTGCC
GTTTTTACTAATGAAGGGGTGCTCAACTTCTCTATTTCATGTATCATACA
TCCAATATTTGTTTATAGGTCAGCAGGTTGCGTCCTAACCCATCCCGATG
CCATCAAGGAGGCTCACAAGCAGTATTTTGAGGCTGGCGCCGACATAGCT
ACCACTTCCACCTACCAAGCGACAGTGCAAGGGTACATGCAAAGGGAAAA
TGATGACATCACGCAAAATCAAGCCGAAGACTTGATTCGCAAAGGTGTGA
CCTTGGCCATCGAGGCCCGCGACGAGTTTTGGGCCCCTACAGGAGGAGTG
GCAGATGAGATGAAGAAAAAGGACAGTAAGCGACAACGCCCTCTAGTGGC
CGCCAGCCTGGGGTGCTACGGCGCGGCCCAAGCGGACGGCTCTGAATATC
GAGGCCAGTACGGGTTGACGATAGAAGAGGTGAGTGTCAGCAGACGAGTC
GCTTCCCGCAATACAACTTATTCTTCCAATCTAAGGCACTTTCTCATTTA
CCCTCCTTTCCTCATTTTAAACGAACAAAAGCTTATGGACTGGCACCGTC
CCCGTCTTGCCCTTCTCGACACGACAGACGCTGACTTTTTGGCATTTGAA
ACTATCCCTTGCGAATCCGAGCTCCTCGCCATTCTGTACCTCCTCCACGA
AGGAGAAGATCAACGCAAAGACACACATGCCAAGAGTAGCAGCAGCCGCA
GCCGCAGCCGCAAGCCTTGCTGGATTACCATGGCTTGCCAAAATGGCACA
CGCCTTAATAGCGGTGAGTCCTTAGAAGCCTGCGCGCGGCATGTGCTTGC
GTTGGACGGTAGCTCAACGTCAAGGGTGGTGGCATTTGGAGTCAACTGCA
TGCCTCCCCAACATGTCGAAGAGGCCCTCTCGGTGATCCGGCGCACTTTC
ACTTCCGAAGCAGCAGGAAAAGAAGTGCCTTTGTTGGTAGCATATCCCAA
CTTGGGTGAGATTTGGGAGGACAAACAGTGGCTTCCGGGGACGGGTTCCT
GTCCTACTCCCGAAGGCTTTGCTCTCTCGGCTGCGCGGTGGGTCGAAGCA
GGGGCTTCGATCGTGGGGGGATGTTGCCGGACGACGCCCAAAACAATCCA
AGCCGTACGGGCACGTCTGATTCCAGTGGAGGAAGAAGAGAAGCAGGGTG
TAAATGACAAGCGAAAGCAAACTTGAAAGACCTTCACCTGTATACGGTTA
TGGCCAAATGGGCCGTCGGGCTTCGGATGGAGAGGTCGTCTTTGCTTGTC
TTTCCTTTGCTTTGGAAGCCGTCGCTACAATATTGTTTCGACCACCAAAC
CAAGAAGGTGAATTGCTACGTTTATTTTCGAAGCAGTGCTCTGCGCTGGT
TAGTTGGCAGGCATACTCGGGGCCCAGCTTTCGAACCTCCCCTATAAGAC
AACTTGTTGTTTATAAGGCTTTCCCTCGTAGTGTAATTTTTGTAAGGCGG
CGGACTTGTGTAAGCATTTGTGTTTACATTTTTTTGCGGGTAGGTTGCAT
GCGATAATTTTAGGATCGTAGGAAACTAC
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Coding sequence (CDS) from alignment at chr3:1244160..1245988-

>NO03G04310.1 ID=NO03G04310.1|Name=NO03G04310.1|organism=Nannochloropsis oceanica|type=CDS|length=1221bp|location=Sequence derived from alignment at chr3:1244160..1245988- (Nannochloropsis oceanica)
ATGGCGGTGGCGGCAGCAGCAGCAGAAGCGGTTGGGTTGTCAAAGGAAAA
AGGCTCGGACACGGAGGCAAGCATCGTGACGCCAGCCAGCAGCACATGCA
CTCGTAGGAACCCGTTGGCAGGCCTCTTGGCGCATCAACGCTACATAATT
AATGATGGCGGCATGGGAACACTGCTCGAGGCCTTGATAGGCATGCCCTT
GGACCCATTGTTGTGGTCAGCAGGTTGCGTCCTAACCCATCCCGATGCCA
TCAAGGAGGCTCACAAGCAGTATTTTGAGGCTGGCGCCGACATAGCTACC
ACTTCCACCTACCAAGCGACAGTGCAAGGGTACATGCAAAGGGAAAATGA
TGACATCACGCAAAATCAAGCCGAAGACTTGATTCGCAAAGGTGTGACCT
TGGCCATCGAGGCCCGCGACGAGTTTTGGGCCCCTACAGGAGGAGTGGCA
GATGAGATGAAGAAAAAGGACAGTAAGCGACAACGCCCTCTAGTGGCCGC
CAGCCTGGGGTGCTACGGCGCGGCCCAAGCGGACGGCTCTGAATATCGAG
GCCAGTACGGGTTGACGATAGAAGAGCTTATGGACTGGCACCGTCCCCGT
CTTGCCCTTCTCGACACGACAGACGCTGACTTTTTGGCATTTGAAACTAT
CCCTTGCGAATCCGAGCTCCTCGCCATTCTGTACCTCCTCCACGAAGGAG
AAGATCAACGCAAAGACACACATGCCAAGAGTAGCAGCAGCCGCAGCCGC
AGCCGCAAGCCTTGCTGGATTACCATGGCTTGCCAAAATGGCACACGCCT
TAATAGCGGTGAGTCCTTAGAAGCCTGCGCGCGGCATGTGCTTGCGTTGG
ACGGTAGCTCAACGTCAAGGGTGGTGGCATTTGGAGTCAACTGCATGCCT
CCCCAACATGTCGAAGAGGCCCTCTCGGTGATCCGGCGCACTTTCACTTC
CGAAGCAGCAGGAAAAGAAGTGCCTTTGTTGGTAGCATATCCCAACTTGG
GTGAGATTTGGGAGGACAAACAGTGGCTTCCGGGGACGGGTTCCTGTCCT
ACTCCCGAAGGCTTTGCTCTCTCGGCTGCGCGGTGGGTCGAAGCAGGGGC
TTCGATCGTGGGGGGATGTTGCCGGACGACGCCCAAAACAATCCAAGCCG
TACGGGCACGTCTGATTCCAGTGGAGGAAGAAGAGAAGCAGGGTGTAAAT
GACAAGCGAAAGCAAACTTGA
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Synonyms
Publications