NO03G04250.2, NO03G04250.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04250.2
Unique NameNO03G04250.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2465
Alignment locationchr3:1225687..1228272 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1225687..1228272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04250.2 vs.
Match: OQR90523.1 (hypothetical protein THRCLA_09308 [Thraustotheca clavata])

HSP 1 Score: 186.8 bits (473), Expect = 1.000e-43
Identity = 105/212 (49.53%), Postives = 144/212 (67.92%), Query Frame = 0 
Query:   96 LGEWSATALCGNDLLSSCLYTIGLVTQKAGKAAPLSFIFVSLVLYLIKNVYAMAVLSFPQNGGSYNVLAHVAPRPLAVLAATLSIISYIATCVVSAVSACDYLSKVIDMNSPVLASVLLLLFFAALVLTGLKESSSIALGIFLVHGITLLVLAVSCFAVATSQGFSVLWLNIDQ-PYPKITMAGSEMSSSLGIALFLGFSSAMLGVSGYETT 307
            L EW ATA+CGND+LSSCLY  GLVT KAGK APL  + V+ +LYL + +Y   V + P NGGSYNVL +   + +A +AA+L+I+SYIAT VVS  SAC YLS  +   S V AS+ LL FFA L   G+ ES+ +AL IF++H +TL+VL V          FS+L+ N+ Q  +P++ +AG+ +S  +  ALF G S+AMLG+SG+E++
Sbjct:   67 LSEWPATAICGNDILSSCLYVSGLVTAKAGKLAPLDLVLVAGILYLYRFIYGEVVNAIPMNGGSYNVLLNTTSKRVASIAASLAILSYIATGVVSGTSACTYLSATVPTLSVVPASIGLLFFFAVLTCMGISESAMVALVIFIIHTLTLVVLCVMSVLFMAKNNFSILYENLFQTDFPEVNVAGTWVSGDVFTALFFGTSTAMLGISGFESS 278
The following BLAST results are available for this feature:
BLAST of NO03G04250.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OQR90523.11.000e-4349.53hypothetical protein THRCLA_09308 [Thraustotheca c... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04250NO03G04250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04250.2NO03G04250.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04250.2.cds1NO03G04250.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04250.2 ID=NO03G04250.2|Name=NO03G04250.2|organism=Nannochloropsis oceanica|type=mRNA|length=2465bp
ATGCACTTTTTGGTTCATGGACTGCTCGCGTGAGCAGACGAGCAAATCAA
AATACTGATTGTCATCCTCCTTCGTCCTTAAACCCAAACAGCAAATCCAT
CAAATGTCTTGGGGGTTGATGGCTCTCATGTGACCAGTCCGATCTCAGCG
CGACAACGAAGTATGTCGAGGAAGGCACCAGGCTTTGTTCATAGCAGCGA
CAACGGAAGCAGTAGCTACAGCAGTGGGAGTTGTAGCAGCAACAGCAGCA
GCGCTGGTAGCAATACGGGACGACCAAGCATCGGCGAGATACGTGACTGG
TCTGCCTTGGATCAGAAGCTGGTGGAAGAAGGTGTCCCAGGAATTATGAT
CGAAAAGCCAGGAAGGATGTCAGAAAGAGGAAAGGAGGGAGGGCGGAGAA
AAGGTGAGAGCACCAGCGAGTGTGGCGGTCCGGAAAAGAAAAACATGTTG
GGAGAGTGGTCGGCAACAGCATTGTGCGGAAATGACCTGCTGTCCTCCTG
CCTCTATACAATCGGACTGGTGACGCAAAAAGCGGGAAAGGCAGCGCCTC
TGTCTTTCATTTTTGTCTCTCTTGTATTGTATCTTATTAAAAACGTGTAC
GCGATGGCCGTGCTTTCCTTCCCTCAAAACGGTGGCAGCTACAATGTCTT
GGCACATGTTGCTCCCCGACCCTTGGCAGTGTTGGCGGCCACTCTTTCCA
TTATCAGTTATATTGCTACGTGTGTGGTGTCTGCTGTGAGTGCATGTGAT
TACCTGAGTAAGGTGATTGACATGAATTCTCCTGTCTTAGCTTCCGTTCT
TCTTCTCCTCTTCTTCGCTGCCTTGGTCTTGACGGGACTTAAAGAGTCTT
CGAGCATTGCCTTGGGTATTTTCCTCGTGCACGGTATCACCCTCTTGGTA
CTGGCTGTCAGTTGTTTTGCCGTTGCTACCTCACAAGGCTTTTCGGTCCT
GTGGCTTAATATTGACCAGCCTTACCCGAAGATCACGATGGCGGGAAGTG
AGATGTCTTCTTCGTTAGGGATAGCACTATTTTTGGGATTCTCATCAGCG
ATGTTGGGTGTGAGTGGTTATGAAACGACGGTAAGTTAGAGGTTCGGAGG
GCGGATGGCTGAATATTGTGGCTGTTTGGGGTTTGAAAACCTTTACGTTT
AAGGATCGCTTAAATGTGCAGCATGCTTTTACGTCTGTGTCTATCAATGG
TCAAACTTCCATATTTTGGATTGTGTCATATTTGTGTCCTATCTCTCGAA
TTTCCTTTTTTTCACACATCTCTCTGCCTCCCCTCTCACCCTCTCACCCT
TCCTCGCTTTCTTTCTTCCTGCCGCCTCTTAGGCACAATGCATCGAACAC
CTCCACTCCGAGACATTCATCAAATGTCTGTGGAATCTCTGGGTTGGCGT
GACAGTCATCAATCCCCTTCTCTCCTTCCTTGCCATCTCCATCCTTCCAA
TCCCTGAGATCAATGCTAACAGTGATACTGTTTTGAGCCGCATGGCCATG
GTGTCAGGGGAGTGGATATTCGGAGAGGGAAGCTCGATGGCCCAGTTGTT
TACAGATTGGATGTCGCTTGAGGCTTTTTGTGTCCTTAGTGGAGCGGTCC
TCACGGCCTTCGTCGGACTTGATGGCCTCGTCTTTCAAATGTCCCTTGAC
AAATGTCTTCCCGGCGTTTTCCTCCGAAAAAATGGATGGCGTGGCACAAA
TCACTATATCATCTTCACCTTTCTCCTTCTGTGCATCGCACTCATCGTGG
CCATGGACGGCAAAGTCACTGAGCTCGCTGGAATGTATTCCATGGCTTTT
CTAGGTGTCCTCGCAACCTTTATAATGGGGAGTATGCTCTTGAAAAACTC
CCCCAAACACATCCCTTTGCTTATCGCAAAAGGTCTGACGGTCAAGTGGT
GGACACTTTGTCTATCTCTAGCCCTGATTTGCATCTCTCTTCTGGGGAAC
CTACTTGGGAGCTCAAGTGTTATCATCTCTTTCCTCTCGTATTTTCTCCC
GATTTATGGGATATGCCTCATCTGTCTTTATGCGGATAAAGCGCGATTAG
TCTGTTGTCCGGGTAGCATGACAGCCACGAGACTCTGCCAGATATTGGTG
AAAAGTGATCCGAAGGCGATCAGTCCTAGGGAGCGCGTAAGGATAACGCT
GAAGGACATTGCGCTGGGTACATTGGACAGAGATGATACGTCTTCCCCCT
CATCCTCATCCTCATCTTCGACCTCACTGTCGTCTGCGTCTTCCTCAACC
TCGCCGAGATATAAATCTGACGGGATTTCGATAGCTTAGTCGCCGTCGCC
AAAGGTGTGGAAACAAAAATAAGGAGGAAAGATGACGGCGAAGAAAAAAA
AGTAAACAGACGTAAAAGAAAAAACAGTCAGCGTACGTAGAGATGTTGTA
ATAAGGTCCTCGCAATCTCCTCATGCTGAAGATATTCCTTCAGAGACATG
GCCACCAAGAGCAAT
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protein sequence of NO03G04250.2

>NO03G04250.2-protein ID=NO03G04250.2-protein|Name=NO03G04250.2|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MSRKAPGFVHSSDNGSSSYSSGSCSSNSSSAGSNTGRPSIGEIRDWSALD
QKLVEEGVPGIMIEKPGRMSERGKEGGRRKGESTSECGGPEKKNMLGEWS
ATALCGNDLLSSCLYTIGLVTQKAGKAAPLSFIFVSLVLYLIKNVYAMAV
LSFPQNGGSYNVLAHVAPRPLAVLAATLSIISYIATCVVSAVSACDYLSK
VIDMNSPVLASVLLLLFFAALVLTGLKESSSIALGIFLVHGITLLVLAVS
CFAVATSQGFSVLWLNIDQPYPKITMAGSEMSSSLGIALFLGFSSAMLGV
SGYETTVS*
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mRNA from alignment at chr3:1225687..1228272-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04250.2 ID=NO03G04250.2|Name=NO03G04250.2|organism=Nannochloropsis oceanica|type=mRNA|length=2586bp|location=Sequence derived from alignment at chr3:1225687..1228272- (Nannochloropsis oceanica)
ATGCACTTTTTGGTTCATGGACTGCTCGCGTGAGCAGACGAGCAAATCAA
AATACTGATTGTCATCCTCCTTCGTCCTTAAACCCAAACAGCAAATCCAT
CAAATGTCTTGGGGGTTGATGGCTCTCATGTGACCAGTCCGATCTCAGCG
CGACAACGAAGTATGTCGAGGAAGGCACCAGGCTTTGTTCATAGCAGCGA
CAACGGAAGCAGTAGCTACAGCAGTGGGAGTTGTAGCAGCAACAGCAGCA
GCGCTGGTAGCAATACGGGACGACCAAGCATCGGCGAGATACGTGACTGG
TCTGCCTTGGATCAGAAGCTGGTGGAAGAAGGTGTCCCAGGAATTATGAT
CGAAAAGCCAGGAAGGATGTCAGAAAGAGGAAAGGAGGGAGGGCGGAGAA
AAGGTGAGAGCACCAGCGAGTGTGGCGGTCCGGAAAAGAAAAACATGTTG
GGAGAGTGGTCGGCAACAGCATTGTGCGGAAATGACCTGCTGTCCTCCTG
CCTCTATACAATCGGACTGGTGACGCAAAAAGCGGGAAAGGCAGCGCCTC
TGTCTTTCATTTTTGTCTCTCTTGTATTGTATCTTATTAAAAACGTGTAC
GCGATGGCCGTGCTTTCCTTCCCTCAAAACGGTGGCAGCTACAATGTCTT
GGCACATGTTGCTCCCCGACCCTTGGCAGTGTTGGCGGCCACTCTTTCCA
TTATCAGTTATATTGCTACGTGTGTGGTGTCTGCTGTGAGTGCATGTGAT
TACCTGAGTAAGGTGATTGACATGAATTCTCCTGTCTTAGCTTCCGTTCT
TCTTCTCCTCTTCTTCGCTGCCTTGGTCTTGACGGGACTTAAAGAGTCTT
CGAGCATTGCCTTGGGTATTTTCCTCGTGCACGGTATCACCCTCTTGGTA
CTGGCTGTCAGTTGTTTTGCCGTTGCTACCTCACAAGGCTTTTCGGTCCT
GTGGCTTAATATTGACCAGCCTTACCCGAAGATCACGATGGCGGGAAGTG
AGATGTCTTCTTCGTTAGGGATAGCACTATTTTTGGGATTCTCATCAGCG
ATGTTGGGTGTGAGTGGTTATGAAACGACGGTAAGTTAGAGGTTCGGAGG
GCGGATGGCTGAATATTGTGGCTGTTTGGGGTTTGAAAACCTTTACGTTT
AAGGATCGCTTAAATGTGCAGCATGCTTTTACGTCTGTGTCTATCAATGG
TCAAACTTCCATATTTTGGATTGTGTCATATTTGTGTCCTATCTCTCGAA
TTTCCTTTTTTTCACACATCTCTCTGCCTCCCCTCTCACCCTCTCACCCT
TCCTCGCTTTCTTTCTTCCTGCCGCCTCTTAGGCACAATGCATCGAACAC
CTCCACTCCGAGACATTCATCAAATGTCTGTGGAATCTCTGGGTTGGCGT
GACAGTCATCAATCCCCTTCTCTCCTTCCTTGCCATCTCCATCCTTCCAA
TCCCTGAGATCAATGCTAACAGTGATACTGTTTTGAGCCGCATGGCCATG
GTGTCAGGGGAGTGGATATTCGGAGAGGGAAGCTCGATGGCCCAGTTGTT
TACAGATTGGATGTCGCTTGAGGCTTTTTGTGTCCTTAGTGGAGGTATGC
TGAGCTACTCAACGTCTTGAGCATGCCATATTTCTCTCTCAAACTCTCTC
CCCCTCTTCAGTCTTCTCACCATCCATTCTTTCACTCCCTCTATCGACCT
TGCTTCCCTTATCAGCGGTCCTCACGGCCTTCGTCGGACTTGATGGCCTC
GTCTTTCAAATGTCCCTTGACAAATGTCTTCCCGGCGTTTTCCTCCGAAA
AAATGGATGGCGTGGCACAAATCACTATATCATCTTCACCTTTCTCCTTC
TGTGCATCGCACTCATCGTGGCCATGGACGGCAAAGTCACTGAGCTCGCT
GGAATGTATTCCATGGCTTTTCTAGGTGTCCTCGCAACCTTTATAATGGG
GAGTATGCTCTTGAAAAACTCCCCCAAACACATCCCTTTGCTTATCGCAA
AAGGTCTGACGGTCAAGTGGTGGACACTTTGTCTATCTCTAGCCCTGATT
TGCATCTCTCTTCTGGGGAACCTACTTGGGAGCTCAAGTGTTATCATCTC
TTTCCTCTCGTATTTTCTCCCGATTTATGGGATATGCCTCATCTGTCTTT
ATGCGGATAAAGCGCGATTAGTCTGTTGTCCGGGTAGCATGACAGCCACG
AGACTCTGCCAGATATTGGTGAAAAGTGATCCGAAGGCGATCAGTCCTAG
GGAGCGCGTAAGGATAACGCTGAAGGACATTGCGCTGGGTACATTGGACA
GAGATGATACGTCTTCCCCCTCATCCTCATCCTCATCTTCGACCTCACTG
TCGTCTGCGTCTTCCTCAACCTCGCCGAGATATAAATCTGACGGGATTTC
GATAGCTTAGTCGCCGTCGCCAAAGGTGTGGAAACAAAAATAAGGAGGAA
AGATGACGGCGAAGAAAAAAAAGTAAACAGACGTAAAAGAAAAAACAGTC
AGCGTACGTAGAGATGTTGTAATAAGGTCCTCGCAATCTCCTCATGCTGA
AGATATTCCTTCAGAGACATGGCCACCAAGAGCAAT
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Coding sequence (CDS) from alignment at chr3:1225687..1228272-

>NO03G04250.2 ID=NO03G04250.2|Name=NO03G04250.2|organism=Nannochloropsis oceanica|type=CDS|length=927bp|location=Sequence derived from alignment at chr3:1225687..1228272- (Nannochloropsis oceanica)
ATGTCGAGGAAGGCACCAGGCTTTGTTCATAGCAGCGACAACGGAAGCAG
TAGCTACAGCAGTGGGAGTTGTAGCAGCAACAGCAGCAGCGCTGGTAGCA
ATACGGGACGACCAAGCATCGGCGAGATACGTGACTGGTCTGCCTTGGAT
CAGAAGCTGGTGGAAGAAGGTGTCCCAGGAATTATGATCGAAAAGCCAGG
AAGGATGTCAGAAAGAGGAAAGGAGGGAGGGCGGAGAAAAGGTGAGAGCA
CCAGCGAGTGTGGCGGTCCGGAAAAGAAAAACATGTTGGGAGAGTGGTCG
GCAACAGCATTGTGCGGAAATGACCTGCTGTCCTCCTGCCTCTATACAAT
CGGACTGGTGACGCAAAAAGCGGGAAAGGCAGCGCCTCTGTCTTTCATTT
TTGTCTCTCTTGTATTGTATCTTATTAAAAACGTGTACGCGATGGCCGTG
CTTTCCTTCCCTCAAAACGGTGGCAGCTACAATGTCTTGGCACATGTTGC
TCCCCGACCCTTGGCAGTGTTGGCGGCCACTCTTTCCATTATCAGTTATA
TTGCTACGTGTGTGGTGTCTGCTGTGAGTGCATGTGATTACCTGAGTAAG
GTGATTGACATGAATTCTCCTGTCTTAGCTTCCGTTCTTCTTCTCCTCTT
CTTCGCTGCCTTGGTCTTGACGGGACTTAAAGAGTCTTCGAGCATTGCCT
TGGGTATTTTCCTCGTGCACGGTATCACCCTCTTGGTACTGGCTGTCAGT
TGTTTTGCCGTTGCTACCTCACAAGGCTTTTCGGTCCTGTGGCTTAATAT
TGACCAGCCTTACCCGAAGATCACGATGGCGGGAAGTGAGATGTCTTCTT
CGTTAGGGATAGCACTATTTTTGGGATTCTCATCAGCGATGTTGGGTGTG
AGTGGTTATGAAACGACGGTAAGTTAG
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Synonyms
Publications