NO03G04250.1, NO03G04250.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G04250.1
Unique Name	NO03G04250.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2213
Alignment location	chr3:1225687..1228272 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:1225687..1228272 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO03G04250.1 vs.
Match: EWM28484.1 (transmembrane protein [Nannochloropsis gaditana])

HSP 1 Score: 349.0 bits (894), Expect = 3.100e-92
Identity = 193/444 (43.47%), Postives = 285/444 (64.19%), Query Frame = 0

Query:   96 LGEWSATALCGNDLLSSCLYTIGLVTQKAGKAAPLSFIFVSLVLYLIKNVYAMAVLSFPQNGGSYNVLAHVAPRPLAVLAATLSIISYIATCVVSAVSACDYLSKVIDMNSPVLASVLLLLFFAALVLTGLKESSSIALGIFLVHGITLLVLAVSCFAVATSQGFSVLWLNIDQPYPKITMAGSEMSSSLGIALFLGFSSAMLGVSGYETTAQCIEHLHSETFIKCLWNLWVGVTVINPLLSFLAISILPIPEINANSDTVLSRMAMVSGEWI-------------FGEGSSMAQLFTDWMSLEAFCVLSGAVLTAFVGLDGLVFQMSLDKCLPGVFLRKNGWRGTNHYIIFTFLLLCIALIVAMDGKVTELAGMYSMAFLGVLATFIMGSMLLKNSPKHIPLLIAKGLTVKWWTLCLSLALICISLLGNLLGSSSVIISFLSY 527
            L +W ATA+CGND+++SC Y +GLVT  AGK APL+ + VS VLYLI+ +YA A+ + P NGGS+NVL +   + +A  AATL+++SYIAT VVSA SA DYL KV+ + +P+LA + LL  FA LV  G+KES+ +A  IF +H  TL +L  +C  V      S L  N   PYP + + G   S S   A+F G++SA+LGVSG+E+++Q ++      F+K L N+WVG  V NP +SFL++ +LP+  I  +   VL++MA   G+W+              G G    +    W+SL+AF VLSG++LTA+VG+ GL+ +M+ D+CLP   LR+N WR T H II  +L+    L++ ++G VT+L+G+YS+AFL VL  F +G+MLLK     +P    + +TV W ++ ++  +I + LLGNL+G+  V++ FL+Y
Sbjct:  110 LNQWEATAICGNDIMASCFYVVGLVTMSAGKMAPLALLLVSCVLYLIRFLYAEAITALPMNGGSFNVLLNSTSKGIASSAATLALVSYIATGVVSATSAVDYLKKVVSVPNPLLAILGLLFLFAVLVFLGIKESAGVAQVIFWIHIFTLTLLC-ACSMVYVVADPSTLRENFRAPYPDVELGGVIRSGSFATAIFFGYTSAILGVSGFESSSQFVQSQAPGVFLKTLRNMWVGAFVFNPTISFLSLGVLPLARIVEDESVVLAKMAKHVGDWMCGGAGAGVEASRRLGAGMGGGRWLEIWVSLDAFLVLSGSLLTAYVGVCGLIERMASDRCLPQFLLRRNPWRRTTHNIILGYLVFSAVLVLILEGNVTDLSGVYSLAFLSVLLLFTVGTMLLKFKRPSLP----RDVTVSWMSVVVAFTMILVGLLGNLMGNPQVLLVFLAY 548

The following BLAST results are available for this feature:

BLAST of NO03G04250.1 vs.

BLAST of NO03G04250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28484.1	3.100e-92	43.47	transmembrane protein [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G04250	NO03G04250	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G04250.1	NO03G04250.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G04250.1.cds1	NO03G04250.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G04250.1.cds2	NO03G04250.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G04250.1.cds3	NO03G04250.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:1225687..1228272-
coding sequence from alignment at chr3:1225687..1228272-

mRNA sequence

>NO03G04250.1 ID=NO03G04250.1|Name=NO03G04250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2213bp
ATGCACTTTTTGGTTCATGGACTGCTCGCGTGAGCAGACGAGCAAATCAA
AATACTGATTGTCATCCTCCTTCGTCCTTAAACCCAAACAGCAAATCCAT
CAAATGTCTTGGGGGTTGATGGCTCTCATGTGACCAGTCCGATCTCAGCG
CGACAACGAAGTATGTCGAGGAAGGCACCAGGCTTTGTTCATAGCAGCGA
CAACGGAAGCAGTAGCTACAGCAGTGGGAGTTGTAGCAGCAACAGCAGCA
GCGCTGGTAGCAATACGGGACGACCAAGCATCGGCGAGATACGTGACTGG
TCTGCCTTGGATCAGAAGCTGGTGGAAGAAGGTGTCCCAGGAATTATGAT
CGAAAAGCCAGGAAGGATGTCAGAAAGAGGAAAGGAGGGAGGGCGGAGAA
AAGGTGAGAGCACCAGCGAGTGTGGCGGTCCGGAAAAGAAAAACATGTTG
GGAGAGTGGTCGGCAACAGCATTGTGCGGAAATGACCTGCTGTCCTCCTG
CCTCTATACAATCGGACTGGTGACGCAAAAAGCGGGAAAGGCAGCGCCTC
TGTCTTTCATTTTTGTCTCTCTTGTATTGTATCTTATTAAAAACGTGTAC
GCGATGGCCGTGCTTTCCTTCCCTCAAAACGGTGGCAGCTACAATGTCTT
GGCACATGTTGCTCCCCGACCCTTGGCAGTGTTGGCGGCCACTCTTTCCA
TTATCAGTTATATTGCTACGTGTGTGGTGTCTGCTGTGAGTGCATGTGAT
TACCTGAGTAAGGTGATTGACATGAATTCTCCTGTCTTAGCTTCCGTTCT
TCTTCTCCTCTTCTTCGCTGCCTTGGTCTTGACGGGACTTAAAGAGTCTT
CGAGCATTGCCTTGGGTATTTTCCTCGTGCACGGTATCACCCTCTTGGTA
CTGGCTGTCAGTTGTTTTGCCGTTGCTACCTCACAAGGCTTTTCGGTCCT
GTGGCTTAATATTGACCAGCCTTACCCGAAGATCACGATGGCGGGAAGTG
AGATGTCTTCTTCGTTAGGGATAGCACTATTTTTGGGATTCTCATCAGCG
ATGTTGGGTGTGAGTGGTTATGAAACGACGGCACAATGCATCGAACACCT
CCACTCCGAGACATTCATCAAATGTCTGTGGAATCTCTGGGTTGGCGTGA
CAGTCATCAATCCCCTTCTCTCCTTCCTTGCCATCTCCATCCTTCCAATC
CCTGAGATCAATGCTAACAGTGATACTGTTTTGAGCCGCATGGCCATGGT
GTCAGGGGAGTGGATATTCGGAGAGGGAAGCTCGATGGCCCAGTTGTTTA
CAGATTGGATGTCGCTTGAGGCTTTTTGTGTCCTTAGTGGAGCGGTCCTC
ACGGCCTTCGTCGGACTTGATGGCCTCGTCTTTCAAATGTCCCTTGACAA
ATGTCTTCCCGGCGTTTTCCTCCGAAAAAATGGATGGCGTGGCACAAATC
ACTATATCATCTTCACCTTTCTCCTTCTGTGCATCGCACTCATCGTGGCC
ATGGACGGCAAAGTCACTGAGCTCGCTGGAATGTATTCCATGGCTTTTCT
AGGTGTCCTCGCAACCTTTATAATGGGGAGTATGCTCTTGAAAAACTCCC
CCAAACACATCCCTTTGCTTATCGCAAAAGGTCTGACGGTCAAGTGGTGG
ACACTTTGTCTATCTCTAGCCCTGATTTGCATCTCTCTTCTGGGGAACCT
ACTTGGGAGCTCAAGTGTTATCATCTCTTTCCTCTCGTATTTTCTCCCGA
TTTATGGGATATGCCTCATCTGTCTTTATGCGGATAAAGCGCGATTAGTC
TGTTGTCCGGGTAGCATGACAGCCACGAGACTCTGCCAGATATTGGTGAA
AAGTGATCCGAAGGCGATCAGTCCTAGGGAGCGCGTAAGGATAACGCTGA
AGGACATTGCGCTGGGTACATTGGACAGAGATGATACGTCTTCCCCCTCA
TCCTCATCCTCATCTTCGACCTCACTGTCGTCTGCGTCTTCCTCAACCTC
GCCGAGATATAAATCTGACGGGATTTCGATAGCTTAGTCGCCGTCGCCAA
AGGTGTGGAAACAAAAATAAGGAGGAAAGATGACGGCGAAGAAAAAAAAG
TAAACAGACGTAAAAGAAAAAACAGTCAGCGTACGTAGAGATGTTGTAAT
AAGGTCCTCGCAATCTCCTCATGCTGAAGATATTCCTTCAGAGACATGGC
CACCAAGAGCAAT

protein sequence of NO03G04250.1

>NO03G04250.1-protein ID=NO03G04250.1-protein|Name=NO03G04250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=625bp
MSRKAPGFVHSSDNGSSSYSSGSCSSNSSSAGSNTGRPSIGEIRDWSALD
QKLVEEGVPGIMIEKPGRMSERGKEGGRRKGESTSECGGPEKKNMLGEWS
ATALCGNDLLSSCLYTIGLVTQKAGKAAPLSFIFVSLVLYLIKNVYAMAV
LSFPQNGGSYNVLAHVAPRPLAVLAATLSIISYIATCVVSAVSACDYLSK
VIDMNSPVLASVLLLLFFAALVLTGLKESSSIALGIFLVHGITLLVLAVS
CFAVATSQGFSVLWLNIDQPYPKITMAGSEMSSSLGIALFLGFSSAMLGV
SGYETTAQCIEHLHSETFIKCLWNLWVGVTVINPLLSFLAISILPIPEIN
ANSDTVLSRMAMVSGEWIFGEGSSMAQLFTDWMSLEAFCVLSGAVLTAFV
GLDGLVFQMSLDKCLPGVFLRKNGWRGTNHYIIFTFLLLCIALIVAMDGK
VTELAGMYSMAFLGVLATFIMGSMLLKNSPKHIPLLIAKGLTVKWWTLCL
SLALICISLLGNLLGSSSVIISFLSYFLPIYGICLICLYADKARLVCCPG
SMTATRLCQILVKSDPKAISPRERVRITLKDIALGTLDRDDTSSPSSSSS
SSTSLSSASSSTSPRYKSDGISIA*

mRNA from alignment at chr3:1225687..1228272-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G04250.1 ID=NO03G04250.1|Name=NO03G04250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2586bp|location=Sequence derived from alignment at chr3:1225687..1228272- (Nannochloropsis oceanica)
ATGCACTTTTTGGTTCATGGACTGCTCGCGTGAGCAGACGAGCAAATCAA
AATACTGATTGTCATCCTCCTTCGTCCTTAAACCCAAACAGCAAATCCAT
CAAATGTCTTGGGGGTTGATGGCTCTCATGTGACCAGTCCGATCTCAGCG
CGACAACGAAGTATGTCGAGGAAGGCACCAGGCTTTGTTCATAGCAGCGA
CAACGGAAGCAGTAGCTACAGCAGTGGGAGTTGTAGCAGCAACAGCAGCA
GCGCTGGTAGCAATACGGGACGACCAAGCATCGGCGAGATACGTGACTGG
TCTGCCTTGGATCAGAAGCTGGTGGAAGAAGGTGTCCCAGGAATTATGAT
CGAAAAGCCAGGAAGGATGTCAGAAAGAGGAAAGGAGGGAGGGCGGAGAA
AAGGTGAGAGCACCAGCGAGTGTGGCGGTCCGGAAAAGAAAAACATGTTG
GGAGAGTGGTCGGCAACAGCATTGTGCGGAAATGACCTGCTGTCCTCCTG
CCTCTATACAATCGGACTGGTGACGCAAAAAGCGGGAAAGGCAGCGCCTC
TGTCTTTCATTTTTGTCTCTCTTGTATTGTATCTTATTAAAAACGTGTAC
GCGATGGCCGTGCTTTCCTTCCCTCAAAACGGTGGCAGCTACAATGTCTT
GGCACATGTTGCTCCCCGACCCTTGGCAGTGTTGGCGGCCACTCTTTCCA
TTATCAGTTATATTGCTACGTGTGTGGTGTCTGCTGTGAGTGCATGTGAT
TACCTGAGTAAGGTGATTGACATGAATTCTCCTGTCTTAGCTTCCGTTCT
TCTTCTCCTCTTCTTCGCTGCCTTGGTCTTGACGGGACTTAAAGAGTCTT
CGAGCATTGCCTTGGGTATTTTCCTCGTGCACGGTATCACCCTCTTGGTA
CTGGCTGTCAGTTGTTTTGCCGTTGCTACCTCACAAGGCTTTTCGGTCCT
GTGGCTTAATATTGACCAGCCTTACCCGAAGATCACGATGGCGGGAAGTG
AGATGTCTTCTTCGTTAGGGATAGCACTATTTTTGGGATTCTCATCAGCG
ATGTTGGGTGTGAGTGGTTATGAAACGACGGTAAGTTAGAGGTTCGGAGG
GCGGATGGCTGAATATTGTGGCTGTTTGGGGTTTGAAAACCTTTACGTTT
AAGGATCGCTTAAATGTGCAGCATGCTTTTACGTCTGTGTCTATCAATGG
TCAAACTTCCATATTTTGGATTGTGTCATATTTGTGTCCTATCTCTCGAA
TTTCCTTTTTTTCACACATCTCTCTGCCTCCCCTCTCACCCTCTCACCCT
TCCTCGCTTTCTTTCTTCCTGCCGCCTCTTAGGCACAATGCATCGAACAC
CTCCACTCCGAGACATTCATCAAATGTCTGTGGAATCTCTGGGTTGGCGT
GACAGTCATCAATCCCCTTCTCTCCTTCCTTGCCATCTCCATCCTTCCAA
TCCCTGAGATCAATGCTAACAGTGATACTGTTTTGAGCCGCATGGCCATG
GTGTCAGGGGAGTGGATATTCGGAGAGGGAAGCTCGATGGCCCAGTTGTT
TACAGATTGGATGTCGCTTGAGGCTTTTTGTGTCCTTAGTGGAGGTATGC
TGAGCTACTCAACGTCTTGAGCATGCCATATTTCTCTCTCAAACTCTCTC
CCCCTCTTCAGTCTTCTCACCATCCATTCTTTCACTCCCTCTATCGACCT
TGCTTCCCTTATCAGCGGTCCTCACGGCCTTCGTCGGACTTGATGGCCTC
GTCTTTCAAATGTCCCTTGACAAATGTCTTCCCGGCGTTTTCCTCCGAAA
AAATGGATGGCGTGGCACAAATCACTATATCATCTTCACCTTTCTCCTTC
TGTGCATCGCACTCATCGTGGCCATGGACGGCAAAGTCACTGAGCTCGCT
GGAATGTATTCCATGGCTTTTCTAGGTGTCCTCGCAACCTTTATAATGGG
GAGTATGCTCTTGAAAAACTCCCCCAAACACATCCCTTTGCTTATCGCAA
AAGGTCTGACGGTCAAGTGGTGGACACTTTGTCTATCTCTAGCCCTGATT
TGCATCTCTCTTCTGGGGAACCTACTTGGGAGCTCAAGTGTTATCATCTC
TTTCCTCTCGTATTTTCTCCCGATTTATGGGATATGCCTCATCTGTCTTT
ATGCGGATAAAGCGCGATTAGTCTGTTGTCCGGGTAGCATGACAGCCACG
AGACTCTGCCAGATATTGGTGAAAAGTGATCCGAAGGCGATCAGTCCTAG
GGAGCGCGTAAGGATAACGCTGAAGGACATTGCGCTGGGTACATTGGACA
GAGATGATACGTCTTCCCCCTCATCCTCATCCTCATCTTCGACCTCACTG
TCGTCTGCGTCTTCCTCAACCTCGCCGAGATATAAATCTGACGGGATTTC
GATAGCTTAGTCGCCGTCGCCAAAGGTGTGGAAACAAAAATAAGGAGGAA
AGATGACGGCGAAGAAAAAAAAGTAAACAGACGTAAAAGAAAAAACAGTC
AGCGTACGTAGAGATGTTGTAATAAGGTCCTCGCAATCTCCTCATGCTGA
AGATATTCCTTCAGAGACATGGCCACCAAGAGCAAT

Coding sequence (CDS) from alignment at chr3:1225687..1228272-

>NO03G04250.1 ID=NO03G04250.1|Name=NO03G04250.1|organism=Nannochloropsis oceanica|type=CDS|length=1875bp|location=Sequence derived from alignment at chr3:1225687..1228272- (Nannochloropsis oceanica)
ATGTCGAGGAAGGCACCAGGCTTTGTTCATAGCAGCGACAACGGAAGCAG
TAGCTACAGCAGTGGGAGTTGTAGCAGCAACAGCAGCAGCGCTGGTAGCA
ATACGGGACGACCAAGCATCGGCGAGATACGTGACTGGTCTGCCTTGGAT
CAGAAGCTGGTGGAAGAAGGTGTCCCAGGAATTATGATCGAAAAGCCAGG
AAGGATGTCAGAAAGAGGAAAGGAGGGAGGGCGGAGAAAAGGTGAGAGCA
CCAGCGAGTGTGGCGGTCCGGAAAAGAAAAACATGTTGGGAGAGTGGTCG
GCAACAGCATTGTGCGGAAATGACCTGCTGTCCTCCTGCCTCTATACAAT
CGGACTGGTGACGCAAAAAGCGGGAAAGGCAGCGCCTCTGTCTTTCATTT
TTGTCTCTCTTGTATTGTATCTTATTAAAAACGTGTACGCGATGGCCGTG
CTTTCCTTCCCTCAAAACGGTGGCAGCTACAATGTCTTGGCACATGTTGC
TCCCCGACCCTTGGCAGTGTTGGCGGCCACTCTTTCCATTATCAGTTATA
TTGCTACGTGTGTGGTGTCTGCTGTGAGTGCATGTGATTACCTGAGTAAG
GTGATTGACATGAATTCTCCTGTCTTAGCTTCCGTTCTTCTTCTCCTCTT
CTTCGCTGCCTTGGTCTTGACGGGACTTAAAGAGTCTTCGAGCATTGCCT
TGGGTATTTTCCTCGTGCACGGTATCACCCTCTTGGTACTGGCTGTCAGT
TGTTTTGCCGTTGCTACCTCACAAGGCTTTTCGGTCCTGTGGCTTAATAT
TGACCAGCCTTACCCGAAGATCACGATGGCGGGAAGTGAGATGTCTTCTT
CGTTAGGGATAGCACTATTTTTGGGATTCTCATCAGCGATGTTGGGTGTG
AGTGGTTATGAAACGACGGCACAATGCATCGAACACCTCCACTCCGAGAC
ATTCATCAAATGTCTGTGGAATCTCTGGGTTGGCGTGACAGTCATCAATC
CCCTTCTCTCCTTCCTTGCCATCTCCATCCTTCCAATCCCTGAGATCAAT
GCTAACAGTGATACTGTTTTGAGCCGCATGGCCATGGTGTCAGGGGAGTG
GATATTCGGAGAGGGAAGCTCGATGGCCCAGTTGTTTACAGATTGGATGT
CGCTTGAGGCTTTTTGTGTCCTTAGTGGAGCGGTCCTCACGGCCTTCGTC
GGACTTGATGGCCTCGTCTTTCAAATGTCCCTTGACAAATGTCTTCCCGG
CGTTTTCCTCCGAAAAAATGGATGGCGTGGCACAAATCACTATATCATCT
TCACCTTTCTCCTTCTGTGCATCGCACTCATCGTGGCCATGGACGGCAAA
GTCACTGAGCTCGCTGGAATGTATTCCATGGCTTTTCTAGGTGTCCTCGC
AACCTTTATAATGGGGAGTATGCTCTTGAAAAACTCCCCCAAACACATCC
CTTTGCTTATCGCAAAAGGTCTGACGGTCAAGTGGTGGACACTTTGTCTA
TCTCTAGCCCTGATTTGCATCTCTCTTCTGGGGAACCTACTTGGGAGCTC
AAGTGTTATCATCTCTTTCCTCTCGTATTTTCTCCCGATTTATGGGATAT
GCCTCATCTGTCTTTATGCGGATAAAGCGCGATTAGTCTGTTGTCCGGGT
AGCATGACAGCCACGAGACTCTGCCAGATATTGGTGAAAAGTGATCCGAA
GGCGATCAGTCCTAGGGAGCGCGTAAGGATAACGCTGAAGGACATTGCGC
TGGGTACATTGGACAGAGATGATACGTCTTCCCCCTCATCCTCATCCTCA
TCTTCGACCTCACTGTCGTCTGCGTCTTCCTCAACCTCGCCGAGATATAA
ATCTGACGGGATTTCGATAGCTTAG

Synonyms

Publications