NO03G03900.1, NO03G03900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03900.1
Unique NameNO03G03900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length264
Alignment locationchr3:1145628..1145891 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1145628..1145891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03900.1 vs.
Match: EWM29793.1 (alpha-glucosidase ii [Nannochloropsis gaditana])

HSP 1 Score: 82.0 bits (201), Expect = 9.900e-13
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 0 
Query:    4 GSLSCVRVGGGMEAGMIKNEVERVVVVGWKSKPKSVTVSV--EGGKEGGEAQAALLLEFEYNGKKKVLTIRKPAVMVDENWTMVIR 88
            G L  VR GG  E    +N+VER+VV+GWK+KPK+VT+SV  +GG E  +A     LEF Y+ KK+VLTIRKP VM+DE+WT+ +R
Sbjct:  923 GMLRNVRQGGA-EDRPFRNQVERIVVLGWKAKPKAVTLSVSEQGGAEK-QATTQRSLEFMYDAKKRVLTIRKPEVMLDEDWTIGLR 1006
The following BLAST results are available for this feature:
BLAST of NO03G03900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29793.19.900e-1354.65alpha-glucosidase ii [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03900NO03G03900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03900.1NO03G03900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03900.1.cds1NO03G03900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03900.1 ID=NO03G03900.1|Name=NO03G03900.1|organism=Nannochloropsis oceanica|type=mRNA|length=264bp
ATGCAAAAGGGCTCTTTGAGTTGCGTGAGGGTGGGGGGTGGAATGGAGGC
AGGGATGATCAAGAATGAGGTAGAGAGGGTGGTAGTGGTGGGCTGGAAGA
GTAAGCCGAAGAGTGTGACGGTTTCGGTGGAGGGAGGAAAGGAGGGAGGC
GAGGCGCAAGCGGCGCTGTTGTTGGAGTTTGAGTATAATGGGAAGAAGAA
GGTGTTGACTATTCGGAAGCCAGCGGTGATGGTGGATGAGAATTGGACGA
TGGTAATCCGATAG
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protein sequence of NO03G03900.1

>NO03G03900.1-protein ID=NO03G03900.1-protein|Name=NO03G03900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MQKGSLSCVRVGGGMEAGMIKNEVERVVVVGWKSKPKSVTVSVEGGKEGG
EAQAALLLEFEYNGKKKVLTIRKPAVMVDENWTMVIR*
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mRNA from alignment at chr3:1145628..1145891+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03900.1 ID=NO03G03900.1|Name=NO03G03900.1|organism=Nannochloropsis oceanica|type=mRNA|length=264bp|location=Sequence derived from alignment at chr3:1145628..1145891+ (Nannochloropsis oceanica)
ATGCAAAAGGGCTCTTTGAGTTGCGTGAGGGTGGGGGGTGGAATGGAGGC
AGGGATGATCAAGAATGAGGTAGAGAGGGTGGTAGTGGTGGGCTGGAAGA
GTAAGCCGAAGAGTGTGACGGTTTCGGTGGAGGGAGGAAAGGAGGGAGGC
GAGGCGCAAGCGGCGCTGTTGTTGGAGTTTGAGTATAATGGGAAGAAGAA
GGTGTTGACTATTCGGAAGCCAGCGGTGATGGTGGATGAGAATTGGACGA
TGGTAATCCGATAG
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Coding sequence (CDS) from alignment at chr3:1145628..1145891+

>NO03G03900.1 ID=NO03G03900.1|Name=NO03G03900.1|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at chr3:1145628..1145891+ (Nannochloropsis oceanica)
ATGCAAAAGGGCTCTTTGAGTTGCGTGAGGGTGGGGGGTGGAATGGAGGC
AGGGATGATCAAGAATGAGGTAGAGAGGGTGGTAGTGGTGGGCTGGAAGA
GTAAGCCGAAGAGTGTGACGGTTTCGGTGGAGGGAGGAAAGGAGGGAGGC
GAGGCGCAAGCGGCGCTGTTGTTGGAGTTTGAGTATAATGGGAAGAAGAA
GGTGTTGACTATTCGGAAGCCAGCGGTGATGGTGGATGAGAATTGGACGA
TGGTAATCCGATAG
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Synonyms
Publications