NO03G03690.1, NO03G03690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03690.1
Unique NameNO03G03690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1284
Alignment locationchr3:1096756..1098614 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1096756..1098614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03690.1 vs.
Match: EWM29860.1 (light-harvesting protein [Nannochloropsis gaditana])

HSP 1 Score: 326.2 bits (835), Expect = 7.200e-86
Identity = 158/175 (90.29%), Postives = 168/175 (96.00%), Query Frame = 0 
Query:   34 MSASDMIGIDVETGGLFDPLGFSKDEQSLYRYRAVELKHGRVAMLACLGTLVQSYTHLPDDVFSNPRPLAALAQISTQRPLAVLQIVLALVFIEVTSGKQDPELAPGQIGRFGEAFKPEGEEEMAAVQLKELKNGRLAMIAIIGQWVQELLTGQGPIEQITAGHISPFGDGQGLF 209
            MSASDMIGIDVETGGLFDPLGFSKDEQSLY+YR VELKHGRVAMLACLGTLVQSYTHLPDDVFSNPRPL AL Q+ ++RPLA+LQIV+A+  IEVTSGKQDPELAPGQ+GRFGEAFKPEGE EMAAVQLKELKNGRLAM+AIIGQWVQELLTGQGPIEQIT+GHISPFGDGQGLF
Sbjct:    1 MSASDMIGIDVETGGLFDPLGFSKDEQSLYKYRQVELKHGRVAMLACLGTLVQSYTHLPDDVFSNPRPLGALGQLLSERPLAILQIVIAITLIEVTSGKQDPELAPGQLGRFGEAFKPEGEAEMAAVQLKELKNGRLAMVAIIGQWVQELLTGQGPIEQITSGHISPFGDGQGLF 175
The following BLAST results are available for this feature:
BLAST of NO03G03690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29860.17.200e-8690.29light-harvesting protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03690NO03G03690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03690.1NO03G03690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03690.1.cds1NO03G03690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03690.1.cds2NO03G03690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03690.1.cds3NO03G03690.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03690.1.cds4NO03G03690.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03690.1 ID=NO03G03690.1|Name=NO03G03690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1284bp
TCTCCTCAATACCTTCGTTCCCTCGTCCCTAGCCCTGCCTTCTGTCGTAT
GCCCTGTGCCACTCATCTGCTAAGCTATGAACACACGAGATACGTTCGGT
CTCTTCGTCTGATCACTCTTGTTACGCGGAAGCATCATGCAGGCCTGAAA
AAGGACTTTCTTTCATCTCATCCTTGCCCTCCTTCCTTGCCGTTGCTTGG
CTCCCCTTCTCGCCTCCCCTTGGGCAGATCCCAACTCTCTGGCTCTTGTT
CCCAGGCGTTCTCACAATCTTCCCTCACCTTTATGACATCAAATTACCTC
AGGACACTTTCCACCTTCCCCTTAAGTCATCATGAAGTTGCTTGCGGCCC
TTACTGGCATCCTCGCCACCGCCTCCGCCTTTGTGCCCTCCGCCCCCCTC
CCCTCTGGCCGTCGAAGCAGCGCCCTCAGAATGTCGGCCTCGGACATGAT
TGGCATTGACGTTGAGACCGGCGGCCTCTTCGACCCTCTTGGTTTCTCCA
AGGACGAGCAGTCCCTATACCGATACCGCGCTGTGGAGCTCAAGCACGGC
CGAGTCGCAATGCTTGCATGCCTCGGCACCCTCGTCCAGTCCTACACCCA
TCTCCCCGATGACGTCTTCTCCAACCCCCGCCCCCTCGCTGCGCTTGCCC
AGATCTCGACTCAGCGCCCCTTGGCCGTGCTCCAGATTGTCCTGGCCCTC
GTCTTCATTGAGGTGACGAGCGGAAAGCAGGACCCGGAGCTGGCCCCTGG
GCAGATTGGTCGATTCGGGGAGGCGTTCAAGCCCGAGGGCGAGGAGGAGA
TGGCGGCCGTGCAGCTGAAGGAGTTGAAGAATGGACGGTTGGCAATGATT
GCTATTATTGGACAGTGGGTGCAGGAGCTGTTGACGGGCCAAGGCCCCAT
TGAGCAGATCACGGCCGGGCACATCTCCCCCTTCGGTGATGGACAAGGAC
TTTTCTAAATTACAGAAATCGTGTCTTGAGAGCGAGTAAGACGAGTAAGA
CGACGAAAGATACAGAGAAAGAAGACCTGCGCTGAGTCTGAGAAGAGAGC
GCAATTTTTTATGGGTCGGAGGGAGGGGGACGGAAGAAAGGTGAAGGAAC
GGAAATTCAACTGCTGCTAGGAGTTGCTTACAAGCAGATCAACATGGTAA
AGGGGGAGACGCATTAATTTTGATCGTAGTTGTCTAAGCAAGGGGCACGG
GGCAGGACAAGGGGCTGAGTCCACGAGGGGAGAAAGGAACGAAAAAAGAA
AACAGAGTCATTCTAGTGAACGAGCGAGTGTGAG
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protein sequence of NO03G03690.1

>NO03G03690.1-protein ID=NO03G03690.1-protein|Name=NO03G03690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MKLLAALTGILATASAFVPSAPLPSGRRSSALRMSASDMIGIDVETGGLF
DPLGFSKDEQSLYRYRAVELKHGRVAMLACLGTLVQSYTHLPDDVFSNPR
PLAALAQISTQRPLAVLQIVLALVFIEVTSGKQDPELAPGQIGRFGEAFK
PEGEEEMAAVQLKELKNGRLAMIAIIGQWVQELLTGQGPIEQITAGHISP
FGDGQGLF*
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mRNA from alignment at chr3:1096756..1098614+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03690.1 ID=NO03G03690.1|Name=NO03G03690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1859bp|location=Sequence derived from alignment at chr3:1096756..1098614+ (Nannochloropsis oceanica)
TCTCCTCAATACCTTCGTTCCCTCGTCCCTAGCCCTGCCTTCTGTCGTAT
GCCCTGTGCCACTCATCTGCTAAGCTATGAACACACGAGATACGTTCGGT
CTCTTCGTCTGATCACTCTTGTTACGCGGAAGCATCATGCAGGCCTGAAA
AAGGACTTTCTTTCATCTCATCCTTGCCCTCCTTCCTTGCCGTTGCTTGG
CTCCCCTTCTCGCCTCCCCTTGGGCAGATCCCAACTCTCTGGCTCTTGTT
CCCAGGCGTTCTCACAATCTTCCCTCACCTTTATGACATCAAATTACCTC
AGGACACTTTCCACCTTCCCCTTAAGTCATCATGAAGTTGCTTGCGGCCC
TTACTGGCATCCTCGCCACCGCCTCCGCCTTTGTAAGTACCCACATAGTG
GCTCAAGTGAAGTAGAAGGATCGTCGTCGTGTGCCTTTCTTGCCTTATGT
GATTGTGTTTGTCTTCCCGCTTGCACCCTTGATGTGTGCTTCTCTGTCTG
TGTCCTGCTGGGCTCAACGCTCACCTTTCCCCTCTTGTCATATTTACTCA
GGTGCCCTCCGCCCCCCTCCCCTCTGGCCGTCGAAGCAGCGCCCTCAGAA
TGTCGGCCTCGGACATGATTGGCATTGACGTTGAGACCGGCGGCCTCTTC
GACCCTCTTGGTTTCTCCAAGGACGAGCAGTCCCTATACCGATACCGCGC
TGTGGAGCTCAAGCACGGCCGAGTCGCAATGCTTGCATGCCTCGGCACCC
TCGTCCAGTCCTACACCCATCTCCCCGATGACGTCTTCTCCAACCCCCGC
CCCCTCGCTGCGCTTGCCCAGATCTCGACTCAGCGCCCCTTGGCCGTGCT
CCAGATTGTCCTGGCCCTCGTCTTCATTGAGGTGACGAGCGGAAAGCAGG
ACCCGGAGCTGGCCCCTGGGCAGATTGGTCGATTCGGGGAGGCGTTCAAG
CCCGAGGGCGAGGAGGAGATGGCGGCCGTGCAGCTGAAGGAGTTGAAGAA
TGGACGGTTGGCAATGGTAAGTGCATGTAGTGCTGTCTGAGCGGATAATT
TAGTGTGTTGTGCTCGTCGGGGTTCAGTGCCAGGAGTGTATATCGCGCAC
GAGTTCTGGCCTCTTTTTAAGCAAGCCTCGCATTGTAGCTCCCCTCTCCT
TTCCCCTCTCTTTTCTCTGTTGTCTCGCCTTCATCTCAATTATTTATATT
CTCACCTCGCTATTCCGTCATCCCTTTCCCACCCTCTGCCTCTCTGGTCC
CTCCAGATTGCTATTATTGGACAGTGGGTGCAGGAGCTGTTGACGGGCCA
AGGCCCCATTGAGCAGATCACGGCCGGGCACATCTCCCCCTTCGGTGATG
GACAAGGACTTTTCTGTAAGTAATTAATTGTATTCAAGAAAGAGGAGGGG
TAGTGACACAAGAGATAAGAGGAAAAGAGAAAATGAGGATGGTTGGATAG
GTGTCACAGCCAGATGAAGTGGCTGGATCGTTGATTGACTCACAAATACA
CCTCCTTTCTGTTTAATCACCACCGCAACAGAAATTACAGAAATCGTGTC
TTGAGAGCGAGTAAGACGAGTAAGACGACGAAAGATACAGAGAAAGAAGA
CCTGCGCTGAGTCTGAGAAGAGAGCGCAATTTTTTATGGGTCGGAGGGAG
GGGGACGGAAGAAAGGTGAAGGAACGGAAATTCAACTGCTGCTAGGAGTT
GCTTACAAGCAGATCAACATGGTAAAGGGGGAGACGCATTAATTTTGATC
GTAGTTGTCTAAGCAAGGGGCACGGGGCAGGACAAGGGGCTGAGTCCACG
AGGGGAGAAAGGAACGAAAAAAGAAAACAGAGTCATTCTAGTGAACGAGC
GAGTGTGAG
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Coding sequence (CDS) from alignment at chr3:1096756..1098614+

>NO03G03690.1 ID=NO03G03690.1|Name=NO03G03690.1|organism=Nannochloropsis oceanica|type=CDS|length=627bp|location=Sequence derived from alignment at chr3:1096756..1098614+ (Nannochloropsis oceanica)
ATGAAGTTGCTTGCGGCCCTTACTGGCATCCTCGCCACCGCCTCCGCCTT
TGTGCCCTCCGCCCCCCTCCCCTCTGGCCGTCGAAGCAGCGCCCTCAGAA
TGTCGGCCTCGGACATGATTGGCATTGACGTTGAGACCGGCGGCCTCTTC
GACCCTCTTGGTTTCTCCAAGGACGAGCAGTCCCTATACCGATACCGCGC
TGTGGAGCTCAAGCACGGCCGAGTCGCAATGCTTGCATGCCTCGGCACCC
TCGTCCAGTCCTACACCCATCTCCCCGATGACGTCTTCTCCAACCCCCGC
CCCCTCGCTGCGCTTGCCCAGATCTCGACTCAGCGCCCCTTGGCCGTGCT
CCAGATTGTCCTGGCCCTCGTCTTCATTGAGGTGACGAGCGGAAAGCAGG
ACCCGGAGCTGGCCCCTGGGCAGATTGGTCGATTCGGGGAGGCGTTCAAG
CCCGAGGGCGAGGAGGAGATGGCGGCCGTGCAGCTGAAGGAGTTGAAGAA
TGGACGGTTGGCAATGATTGCTATTATTGGACAGTGGGTGCAGGAGCTGT
TGACGGGCCAAGGCCCCATTGAGCAGATCACGGCCGGGCACATCTCCCCC
TTCGGTGATGGACAAGGACTTTTCTAA
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Synonyms
Publications