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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:1056799..1059264 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G03540.2 vs.
Match: EWM29836.1 (alkyl sulfatase or beta-lactamase [Nannochloropsis gaditana]) HSP 1 Score: 995.3 bits (2572), Expect = 9.000e-287 Identity = 508/681 (74.60%), Postives = 568/681 (83.41%), Query Frame = 0
Query: 1 MARTAKRSDDETDGNGSQTGDMPPRAPPRLRKRQSSHRRNAGR-GPAGARSGWALIWLVALGGVLGLLLYSYRTLVPRAQIVESQRKMPTPVVLEHHCKEHIGPPRVIRVTDTVWVAVGYDLANTILIKTSAGHVIVDVAMSPSKARVIRQALIEAAGNAPIHTIIYTHSHIDHVGGASGWAANATKIWATDAVTGHFFKQYGVFRKVESLRGSRQYGYLVSPSDLPCSALGARVDLDAMKGEAGFLLPTDTFQGHASFSVGEEDFDLIEAHGETHDMLIVWLPKQKVLLPGDNYYRAFPNLYTIRGTTPRPVRAWIQSLDTMRKLKPEYLVPSHTEPVFGLETVSKQLTDYRDGIQWVYVETIRGANEGKSMDELASSVGLPLHLRDNDALDELYGQIDWSVRAIYSGELGWFDGQAEVREKKGECWGNDLYLAFYCIPINCLYPDMYYPPLRSFLIPQELYPLGHEEESQKTVLLMGGASKVLKAVEDAQAMNDHRWALHLLHMLRAVQKKDKSVSRKILKALEAASLRALGRTIFNTNGRAYLLQTALEREGNSPRAETKPVLSDAFIDSIPISLVFEVMQTRLRPELSIDVHESAIFLVGGSKHIVTVRRGVAEVTKGDALHGTPEPIGTFIADENTFRRIMLQLKSPGKAIMNGDVRIEGDQLKFLVFVQRFERGA 681
MART KRSDDE DGNGS PRAPPRL+KRQSSH+RN+G G +G RSGW++IW+VALGG+LGLL+YS+RTL+PRA+IVESQR+MPTPVVLEHHCKEHIGPPRV++VT+ VWVAVG+DLANTILIKT+AGHVIVDVAMSP +A VIR+ALIEAAG+APIHTIIYTHSHIDHVGGASGWA N T+IW+T+AVT HFFKQYGVFRK ESLRGSRQYG LV+ ++LPCSALGARVDLDAM+ EAGFLLPTDTF+G+ASFSVG EDF+LIEAHGETHDML+VWLP+QKVLLPGDNYYRAFPNLYTIRGTTPRPVRAWIQSLD MRKLKP+YLVPSHTEPV GLE +SKQLTDYRDGIQWVY+ETIRGAN+G +LDEL + + L GQ + K A Y + + P+ELYP+ H+EES+KTV LMGGASKV KAVEDAQAMNDHRWAL L+ LR VQKKDKSVSRK+L ALEAASLRALG+TIFNTNGRAYLLQ+ALEREG+ PR ETKPVLSDAFIDSIPISLVFEVMQTRLRPELSIDVHESAIF VG +K+IVTVRRGVAE++KGDA+ GTP+PIGTFIADEN FRRIMLQLKSPGKAIMNGDVRI+GDQL+FL FVQRFERGA
Sbjct: 1 MARTVKRSDDEGDGNGSYLRSGSPRAPPRLKKRQSSHKRNSGVVGVSGGRSGWSMIWMVALGGILGLLVYSWRTLIPRAKIVESQRRMPTPVVLEHHCKEHIGPPRVLQVTENVWVAVGFDLANTILIKTNAGHVIVDVAMSPPRAHVIRKALIEAAGDAPIHTIIYTHSHIDHVGGASGWAGNGTRIWSTEAVTSHFFKQYGVFRKTESLRGSRQYGTLVAMTELPCSALGARVDLDAMRAEAGFLLPTDTFRGNASFSVGGEDFELIEAHGETHDMLVVWLPRQKVLLPGDNYYRAFPNLYTIRGTTPRPVRAWIQSLDMMRKLKPDYLVPSHTEPVVGLEAISKQLTDYRDGIQWVYMETIRGANDG-------------------KSLDELALSVGLPPHLRDNDALDELYGQIDWSVK-----------AIYSGELGWFDGN-----------PEELYPVAHDEESEKTVSLMGGASKVFKAVEDAQAMNDHRWALRLISHLRTVQKKDKSVSRKVLTALEAASLRALGQTIFNTNGRAYLLQSALEREGSGPRQETKPVLSDAFIDSIPISLVFEVMQTRLRPELSIDVHESAIFQVGEAKYIVTVRRGVAEISKGDAIFGTPDPIGTFIADENMFRRIMLQLKSPGKAIMNGDVRIKGDQLRFLTFVQRFERGA 640
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G03540.2 ID=NO03G03540.2|Name=NO03G03540.2|organism=Nannochloropsis oceanica|type=mRNA|length=2320bp
ACAGAGAGCAGCAGTGGTGCAAGCACCGCTTGCTACCACGAGGAGCCTCT
AGCGCAAGTCCCGCACCACATTGCGTACAAATGGCGCGCACGGCCAAGCG
CTCGGACGACGAAACTGACGGTAATGGCAGTCAAACTGGTGACATGCCGC
CTCGTGCACCCCCCCGACTGAGGAAGCGGCAGTCGTCCCACAGAAGGAAC
GCCGGGAGAGGACCGGCGGGAGCACGGAGTGGCTGGGCGTTGATTTGGCT
GGTGGCTCTTGGGGGCGTTTTGGGCCTGTTACTCTATTCATATCGCACAC
TGGTCCCGCGGGCACAAATCGTCGAGTCTCAACGGAAGATGCCCACCCCA
GTTGTCCTGGAGCATCATTGCAAGGAGCACATTGGACCGCCGCGGGTCAT
TCGAGTGACCGACACGGTGTGGGTAGCCGTGGGCTACGACTTGGCCAATA
CCATTTTGATCAAGACTAGCGCGGGGCATGTAATTGTCGATGTTGCCATG
AGCCCTTCCAAGGCTAGGGTAATTCGTCAGGCGCTTATTGAGGCTGCTGG
GAATGCTCCTATACATACCATTATCTACACGCACTCCCACATTGACCATG
TTGGGGGTGCGTCAGGCTGGGCCGCCAATGCTACAAAGATATGGGCCACG
GATGCGGTGACGGGGCATTTTTTCAAACAGTACGGGGTGTTTCGCAAGGT
CGAAAGTTTGCGAGGATCCCGTCAATACGGCTACCTCGTGTCACCGAGCG
ACTTGCCGTGCTCCGCTCTGGGGGCCCGCGTGGATTTAGACGCTATGAAG
GGCGAAGCAGGGTTCTTGCTCCCCACGGATACCTTCCAGGGACATGCCTC
GTTTTCCGTAGGTGAGGAGGACTTTGACTTGATCGAGGCGCATGGCGAGA
CGCATGACATGCTGATCGTGTGGTTGCCGAAGCAGAAGGTGCTGCTGCCG
GGCGATAATTACTACCGAGCCTTCCCCAACCTCTACACCATCCGCGGCAC
CACCCCACGTCCCGTCCGCGCCTGGATTCAATCTTTGGACACCATGCGGA
AGCTTAAGCCCGAATATTTGGTGCCTTCGCACACTGAACCTGTTTTCGGA
CTTGAAACTGTGTCTAAGCAATTGACTGATTACCGTGATGGGATCCAGTG
GGTGTATGTGGAGACGATCCGCGGGGCTAATGAGGGGAAGAGCATGGACG
AGCTGGCCTCCTCGGTGGGATTGCCATTGCATTTAAGAGATAATGATGCG
CTGGACGAGCTGTATGGACAAATCGATTGGTCCGTGAGGGCGATTTATTC
GGGGGAGCTGGGCTGGTTTGATGGGCAGGCGGAGGTAAGGGAAAAGAAGG
GAGAGTGTTGGGGAAATGATTTGTATCTTGCTTTTTACTGCATTCCTATA
AATTGTTTGTACCCAGACATGTATTATCCTCCACTCCGTTCTTTTCTCAT
TCCTCAGGAGCTCTACCCGCTCGGCCACGAGGAAGAGTCGCAAAAGACGG
TCCTCCTCATGGGCGGGGCGTCCAAAGTACTCAAAGCAGTGGAAGACGCG
CAAGCCATGAACGATCACCGATGGGCACTGCATCTCCTCCATATGCTGCG
TGCCGTCCAAAAAAAGGACAAATCCGTCTCGCGTAAGATTCTCAAAGCGC
TAGAAGCTGCCAGCTTGCGTGCCTTGGGTCGGACAATTTTCAATACCAAC
GGCAGGGCTTACTTGCTGCAGACGGCGTTGGAAAGAGAGGGGAATAGTCC
ACGGGCTGAGACCAAGCCAGTGCTGTCGGATGCGTTCATTGACTCCATTC
CTATTTCACTGGTATTTGAAGTAATGCAAACCAGGCTACGACCAGAGCTT
TCAATTGACGTGCATGAGTCAGCCATATTCCTTGTTGGGGGGTCAAAGCA
CATTGTGACGGTGCGGAGGGGCGTGGCGGAGGTGACGAAGGGTGATGCTT
TGCATGGAACTCCTGAACCTATTGGAACATTTATTGCGGATGAGAATACG
TTCCGACGAATCATGTTGCAGCTGAAATCTCCGGGGAAGGCTATTATGAA
TGGCGATGTACGGATTGAAGGGGACCAGCTTAAGTTCCTTGTGTTCGTGC
AGCGATTTGAGCGGGGTGCTTAAAATTGAGAACGAAAAACGCATGCATGG
ATTCCTAGGGGCATGTGTGAGGTTCAATGGAATGTGGATTGGGGATAGGA
TGGGGGGGAATGTCAAGGGGATGCTTGAAAATGAACGATACCGGCAGAAA
TAGAGATGGAGGTATATGGATAAATAACAAAATCAAAGAATTACGGGAAA
ATAATGCACGGTCGTACAAG back to topprotein sequence of NO03G03540.2 >NO03G03540.2-protein ID=NO03G03540.2-protein|Name=NO03G03540.2|organism=Nannochloropsis oceanica|type=polypeptide|length=681bp
MARTAKRSDDETDGNGSQTGDMPPRAPPRLRKRQSSHRRNAGRGPAGARS
GWALIWLVALGGVLGLLLYSYRTLVPRAQIVESQRKMPTPVVLEHHCKEH
IGPPRVIRVTDTVWVAVGYDLANTILIKTSAGHVIVDVAMSPSKARVIRQ
ALIEAAGNAPIHTIIYTHSHIDHVGGASGWAANATKIWATDAVTGHFFKQ
YGVFRKVESLRGSRQYGYLVSPSDLPCSALGARVDLDAMKGEAGFLLPTD
TFQGHASFSVGEEDFDLIEAHGETHDMLIVWLPKQKVLLPGDNYYRAFPN
LYTIRGTTPRPVRAWIQSLDTMRKLKPEYLVPSHTEPVFGLETVSKQLTD
YRDGIQWVYVETIRGANEGKSMDELASSVGLPLHLRDNDALDELYGQIDW
SVRAIYSGELGWFDGQAEVREKKGECWGNDLYLAFYCIPINCLYPDMYYP
PLRSFLIPQELYPLGHEEESQKTVLLMGGASKVLKAVEDAQAMNDHRWAL
HLLHMLRAVQKKDKSVSRKILKALEAASLRALGRTIFNTNGRAYLLQTAL
EREGNSPRAETKPVLSDAFIDSIPISLVFEVMQTRLRPELSIDVHESAIF
LVGGSKHIVTVRRGVAEVTKGDALHGTPEPIGTFIADENTFRRIMLQLKS
PGKAIMNGDVRIEGDQLKFLVFVQRFERGA* back to topmRNA from alignment at chr3:1056799..1059264- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G03540.2 ID=NO03G03540.2|Name=NO03G03540.2|organism=Nannochloropsis oceanica|type=mRNA|length=2466bp|location=Sequence derived from alignment at chr3:1056799..1059264- (Nannochloropsis oceanica)
ACAGAGAGCAGCAGTGGTGCAAGCACCGCTTGCTACCACGAGGAGCCTCT
AGCGCAAGTCCCGCACCACATTGCGTACAAATGGCGCGCACGGCCAAGCG
CTCGGACGACGAAACTGACGGTAATGGCAGTCAAACTGGTGACATGCCGC
CTCGTGCACCCCCCCGACTGAGGAAGCGGCAGTCGTCCCACAGAAGGAAC
GCCGGGAGAGGACCGGCGGGAGCACGGAGTGGCTGGGCGTTGATTTGGCT
GGTGGCTCTTGGGGGCGTTTTGGGCCTGTTACTCTATTCATATCGCACAC
TGGTCCCGCGGGCACAAATCGTCGAGTCTCAACGGAAGATGCCCACCCCA
GTTGTCCTGGAGCATCATTGCAAGGAGCACATTGGACCGCCGCGGGTCAT
TCGAGTGACCGACACGGTGTGGGTAGCCGTGGGCTACGACTTGGCCAATA
CCATTTTGATCAAGACTAGCGCGGGGCATGTAATTGTCGATGTTGCCATG
AGCCCTTCCAAGGCTAGGGTAATTCGTCAGGCGCTTATTGAGGCTGCTGG
GAATGCTCCTATACATACCATTATCTACACGCACTCCCACATTGACCATG
TTGGGGGTGCGTCAGGCTGGGCCGCCAATGCTACAAAGATATGGGCCACG
GATGCGGTGACGGGGCATTTTTTCAAACAGTACGGGGTGTTTCGCAAGGT
ACACATCGAGATGGCGGTAGCGTGGTATAGAGAGGTGGAGGATGGTGGAA
TGTAATCGACAGGGCATGCATAATACAAGCTACTTCAATCCACCTCACCC
ATGCACACTTAACACTCCATTCCTGCTCTCAAACCCTACACCAGGTCGAA
AGTTTGCGAGGATCCCGTCAATACGGCTACCTCGTGTCACCGAGCGACTT
GCCGTGCTCCGCTCTGGGGGCCCGCGTGGATTTAGACGCTATGAAGGGCG
AAGCAGGGTTCTTGCTCCCCACGGATACCTTCCAGGGACATGCCTCGTTT
TCCGTAGGTGAGGAGGACTTTGACTTGATCGAGGCGCATGGCGAGACGCA
TGACATGCTGATCGTGTGGTTGCCGAAGCAGAAGGTGCTGCTGCCGGGCG
ATAATTACTACCGAGCCTTCCCCAACCTCTACACCATCCGCGGCACCACC
CCACGTCCCGTCCGCGCCTGGATTCAATCTTTGGACACCATGCGGAAGCT
TAAGCCCGAATATTTGGTGCCTTCGCACACTGAACCTGTTTTCGGACTTG
AAACTGTGTCTAAGCAATTGACTGATTACCGTGATGGGATCCAGTGGGTG
TATGTGGAGACGATCCGCGGGGCTAATGAGGGGAAGAGCATGGACGAGCT
GGCCTCCTCGGTGGGATTGCCATTGCATTTAAGAGATAATGATGCGCTGG
ACGAGCTGTATGGACAAATCGATTGGTCCGTGAGGGCGATTTATTCGGGG
GAGCTGGGCTGGTTTGATGGGCAGGCGGAGGTAAGGGAAAAGAAGGGAGA
GTGTTGGGGAAATGATTTGTATCTTGCTTTTTACTGCATTCCTATAAATT
GTTTGTACCCAGACATGTATTATCCTCCACTCCGTTCTTTTCTCATTCCT
CAGGAGCTCTACCCGCTCGGCCACGAGGAAGAGTCGCAAAAGACGGTCCT
CCTCATGGGCGGGGCGTCCAAAGTACTCAAAGCAGTGGAAGACGCGCAAG
CCATGAACGATCACCGATGGGCACTGCATCTCCTCCATATGCTGCGTGCC
GTCCAAAAAAAGGACAAATCCGTCTCGCGTAAGATTCTCAAAGCGCTAGA
AGCTGCCAGCTTGCGTGCCTTGGGTCGGACAATTTTCAATACCAACGGCA
GGGCTTACTTGCTGCAGACGGCGTTGGAAAGAGAGGGGAATAGTCCACGG
GCTGAGACCAAGCCAGTGCTGTCGGATGCGTTCATTGACTCCATTCCTAT
TTCACTGGTATTTGAAGTAATGCAAACCAGGCTACGACCAGAGCTTTCAA
TTGACGTGCATGAGTCAGCCATATTCCTTGTTGGGGGGTCAAAGCACATT
GTGACGGTGCGGAGGGGCGTGGCGGAGGTGACGAAGGGTGATGCTTTGCA
TGGAACTCCTGAACCTATTGGAACATTTATTGCGGATGAGAATACGTTCC
GACGAATCATGTTGCAGCTGAAATCTCCGGGGAAGGCTATTATGAATGGC
GATGTACGGATTGAAGGGGACCAGCTTAAGTTCCTTGTGTTCGTGCAGCG
ATTTGAGCGGGGTGCTTAAAATTGAGAACGAAAAACGCATGCATGGATTC
CTAGGGGCATGTGTGAGGTTCAATGGAATGTGGATTGGGGATAGGATGGG
GGGGAATGTCAAGGGGATGCTTGAAAATGAACGATACCGGCAGAAATAGA
GATGGAGGTATATGGATAAATAACAAAATCAAAGAATTACGGGAAAATAA
TGCACGGTCGTACAAG back to topCoding sequence (CDS) from alignment at chr3:1056799..1059264- >NO03G03540.2 ID=NO03G03540.2|Name=NO03G03540.2|organism=Nannochloropsis oceanica|type=CDS|length=2043bp|location=Sequence derived from alignment at chr3:1056799..1059264- (Nannochloropsis oceanica)
ATGGCGCGCACGGCCAAGCGCTCGGACGACGAAACTGACGGTAATGGCAG
TCAAACTGGTGACATGCCGCCTCGTGCACCCCCCCGACTGAGGAAGCGGC
AGTCGTCCCACAGAAGGAACGCCGGGAGAGGACCGGCGGGAGCACGGAGT
GGCTGGGCGTTGATTTGGCTGGTGGCTCTTGGGGGCGTTTTGGGCCTGTT
ACTCTATTCATATCGCACACTGGTCCCGCGGGCACAAATCGTCGAGTCTC
AACGGAAGATGCCCACCCCAGTTGTCCTGGAGCATCATTGCAAGGAGCAC
ATTGGACCGCCGCGGGTCATTCGAGTGACCGACACGGTGTGGGTAGCCGT
GGGCTACGACTTGGCCAATACCATTTTGATCAAGACTAGCGCGGGGCATG
TAATTGTCGATGTTGCCATGAGCCCTTCCAAGGCTAGGGTAATTCGTCAG
GCGCTTATTGAGGCTGCTGGGAATGCTCCTATACATACCATTATCTACAC
GCACTCCCACATTGACCATGTTGGGGGTGCGTCAGGCTGGGCCGCCAATG
CTACAAAGATATGGGCCACGGATGCGGTGACGGGGCATTTTTTCAAACAG
TACGGGGTGTTTCGCAAGGTCGAAAGTTTGCGAGGATCCCGTCAATACGG
CTACCTCGTGTCACCGAGCGACTTGCCGTGCTCCGCTCTGGGGGCCCGCG
TGGATTTAGACGCTATGAAGGGCGAAGCAGGGTTCTTGCTCCCCACGGAT
ACCTTCCAGGGACATGCCTCGTTTTCCGTAGGTGAGGAGGACTTTGACTT
GATCGAGGCGCATGGCGAGACGCATGACATGCTGATCGTGTGGTTGCCGA
AGCAGAAGGTGCTGCTGCCGGGCGATAATTACTACCGAGCCTTCCCCAAC
CTCTACACCATCCGCGGCACCACCCCACGTCCCGTCCGCGCCTGGATTCA
ATCTTTGGACACCATGCGGAAGCTTAAGCCCGAATATTTGGTGCCTTCGC
ACACTGAACCTGTTTTCGGACTTGAAACTGTGTCTAAGCAATTGACTGAT
TACCGTGATGGGATCCAGTGGGTGTATGTGGAGACGATCCGCGGGGCTAA
TGAGGGGAAGAGCATGGACGAGCTGGCCTCCTCGGTGGGATTGCCATTGC
ATTTAAGAGATAATGATGCGCTGGACGAGCTGTATGGACAAATCGATTGG
TCCGTGAGGGCGATTTATTCGGGGGAGCTGGGCTGGTTTGATGGGCAGGC
GGAGGTAAGGGAAAAGAAGGGAGAGTGTTGGGGAAATGATTTGTATCTTG
CTTTTTACTGCATTCCTATAAATTGTTTGTACCCAGACATGTATTATCCT
CCACTCCGTTCTTTTCTCATTCCTCAGGAGCTCTACCCGCTCGGCCACGA
GGAAGAGTCGCAAAAGACGGTCCTCCTCATGGGCGGGGCGTCCAAAGTAC
TCAAAGCAGTGGAAGACGCGCAAGCCATGAACGATCACCGATGGGCACTG
CATCTCCTCCATATGCTGCGTGCCGTCCAAAAAAAGGACAAATCCGTCTC
GCGTAAGATTCTCAAAGCGCTAGAAGCTGCCAGCTTGCGTGCCTTGGGTC
GGACAATTTTCAATACCAACGGCAGGGCTTACTTGCTGCAGACGGCGTTG
GAAAGAGAGGGGAATAGTCCACGGGCTGAGACCAAGCCAGTGCTGTCGGA
TGCGTTCATTGACTCCATTCCTATTTCACTGGTATTTGAAGTAATGCAAA
CCAGGCTACGACCAGAGCTTTCAATTGACGTGCATGAGTCAGCCATATTC
CTTGTTGGGGGGTCAAAGCACATTGTGACGGTGCGGAGGGGCGTGGCGGA
GGTGACGAAGGGTGATGCTTTGCATGGAACTCCTGAACCTATTGGAACAT
TTATTGCGGATGAGAATACGTTCCGACGAATCATGTTGCAGCTGAAATCT
CCGGGGAAGGCTATTATGAATGGCGATGTACGGATTGAAGGGGACCAGCT
TAAGTTCCTTGTGTTCGTGCAGCGATTTGAGCGGGGTGCTTAA back to top
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