NO03G03540.1, NO03G03540.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G03540.1
Unique Name	NO03G03540.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2197
Alignment location	chr3:1056799..1059264 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:1056799..1059264 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G03540.1 vs.
Match: EWM29836.1 (alkyl sulfatase or beta-lactamase [Nannochloropsis gaditana])

HSP 1 Score: 1105.1 bits (2857), Expect = 0.000e+0
Identity = 540/640 (84.38%), Postives = 595/640 (92.97%), Query Frame = 0

Query:    1 MARTAKRSDDETDGNGSQTGDMPPRAPPRLRKRQSSHRRNAGR-GPAGARSGWALIWLVALGGVLGLLLYSYRTLVPRAQIVESQRKMPTPVVLEHHCKEHIGPPRVIRVTDTVWVAVGYDLANTILIKTSAGHVIVDVAMSPSKARVIRQALIEAAGNAPIHTIIYTHSHIDHVGGASGWAANATKIWATDAVTGHFFKQYGVFRKVESLRGSRQYGYLVSPSDLPCSALGARVDLDAMKGEAGFLLPTDTFQGHASFSVGEEDFDLIEAHGETHDMLIVWLPKQKVLLPGDNYYRAFPNLYTIRGTTPRPVRAWIQSLDTMRKLKPEYLVPSHTEPVFGLETVSKQLTDYRDGIQWVYVETIRGANEGKSMDELASSVGLPLHLRDNDALDELYGQIDWSVRAIYSGELGWFDGQAEELYPLGHEEESQKTVLLMGGASKVLKAVEDAQAMNDHRWALHLLHMLRAVQKKDKSVSRKILKALEAASLRALGRTIFNTNGRAYLLQTALEREGNSPRAETKPVLSDAFIDSIPISLVFEVMQTRLRPELSIDVHESAIFLVGGSKHIVTVRRGVAEVTKGDALHGTPEPIGTFIADENTFRRIMLQLKSPGKAIMNGDVRIEGDQLKFLVFVQRFERGA 640
            MART KRSDDE DGNGS      PRAPPRL+KRQSSH+RN+G  G +G RSGW++IW+VALGG+LGLL+YS+RTL+PRA+IVESQR+MPTPVVLEHHCKEHIGPPRV++VT+ VWVAVG+DLANTILIKT+AGHVIVDVAMSP +A VIR+ALIEAAG+APIHTIIYTHSHIDHVGGASGWA N T+IW+T+AVT HFFKQYGVFRK ESLRGSRQYG LV+ ++LPCSALGARVDLDAM+ EAGFLLPTDTF+G+ASFSVG EDF+LIEAHGETHDML+VWLP+QKVLLPGDNYYRAFPNLYTIRGTTPRPVRAWIQSLD MRKLKP+YLVPSHTEPV GLE +SKQLTDYRDGIQWVY+ETIRGAN+GKS+DELA SVGLP HLRDNDALDELYGQIDWSV+AIYSGELGWFDG  EELYP+ H+EES+KTV LMGGASKV KAVEDAQAMNDHRWAL L+  LR VQKKDKSVSRK+L ALEAASLRALG+TIFNTNGRAYLLQ+ALEREG+ PR ETKPVLSDAFIDSIPISLVFEVMQTRLRPELSIDVHESAIF VG +K+IVTVRRGVAE++KGDA+ GTP+PIGTFIADEN FRRIMLQLKSPGKAIMNGDVRI+GDQL+FL FVQRFERGA
Sbjct:    1 MARTVKRSDDEGDGNGSYLRSGSPRAPPRLKKRQSSHKRNSGVVGVSGGRSGWSMIWMVALGGILGLLVYSWRTLIPRAKIVESQRRMPTPVVLEHHCKEHIGPPRVLQVTENVWVAVGFDLANTILIKTNAGHVIVDVAMSPPRAHVIRKALIEAAGDAPIHTIIYTHSHIDHVGGASGWAGNGTRIWSTEAVTSHFFKQYGVFRKTESLRGSRQYGTLVAMTELPCSALGARVDLDAMRAEAGFLLPTDTFRGNASFSVGGEDFELIEAHGETHDMLVVWLPRQKVLLPGDNYYRAFPNLYTIRGTTPRPVRAWIQSLDMMRKLKPDYLVPSHTEPVVGLEAISKQLTDYRDGIQWVYMETIRGANDGKSLDELALSVGLPPHLRDNDALDELYGQIDWSVKAIYSGELGWFDGNPEELYPVAHDEESEKTVSLMGGASKVFKAVEDAQAMNDHRWALRLISHLRTVQKKDKSVSRKVLTALEAASLRALGQTIFNTNGRAYLLQSALEREGSGPRQETKPVLSDAFIDSIPISLVFEVMQTRLRPELSIDVHESAIFQVGEAKYIVTVRRGVAEISKGDAIFGTPDPIGTFIADENMFRRIMLQLKSPGKAIMNGDVRIKGDQLRFLTFVQRFERGA 640

The following BLAST results are available for this feature:

BLAST of NO03G03540.1 vs.

BLAST of NO03G03540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29836.1	0.000e+0	84.38	alkyl sulfatase or beta-lactamase [Nannochloropsis...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G03540	NO03G03540	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G03540.1	NO03G03540.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G03540.1.cds1	NO03G03540.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G03540.1.cds2	NO03G03540.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G03540.1.cds3	NO03G03540.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:1056799..1059264-
coding sequence from alignment at chr3:1056799..1059264-

mRNA sequence

>NO03G03540.1 ID=NO03G03540.1|Name=NO03G03540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2197bp
ACAGAGAGCAGCAGTGGTGCAAGCACCGCTTGCTACCACGAGGAGCCTCT
AGCGCAAGTCCCGCACCACATTGCGTACAAATGGCGCGCACGGCCAAGCG
CTCGGACGACGAAACTGACGGTAATGGCAGTCAAACTGGTGACATGCCGC
CTCGTGCACCCCCCCGACTGAGGAAGCGGCAGTCGTCCCACAGAAGGAAC
GCCGGGAGAGGACCGGCGGGAGCACGGAGTGGCTGGGCGTTGATTTGGCT
GGTGGCTCTTGGGGGCGTTTTGGGCCTGTTACTCTATTCATATCGCACAC
TGGTCCCGCGGGCACAAATCGTCGAGTCTCAACGGAAGATGCCCACCCCA
GTTGTCCTGGAGCATCATTGCAAGGAGCACATTGGACCGCCGCGGGTCAT
TCGAGTGACCGACACGGTGTGGGTAGCCGTGGGCTACGACTTGGCCAATA
CCATTTTGATCAAGACTAGCGCGGGGCATGTAATTGTCGATGTTGCCATG
AGCCCTTCCAAGGCTAGGGTAATTCGTCAGGCGCTTATTGAGGCTGCTGG
GAATGCTCCTATACATACCATTATCTACACGCACTCCCACATTGACCATG
TTGGGGGTGCGTCAGGCTGGGCCGCCAATGCTACAAAGATATGGGCCACG
GATGCGGTGACGGGGCATTTTTTCAAACAGTACGGGGTGTTTCGCAAGGT
CGAAAGTTTGCGAGGATCCCGTCAATACGGCTACCTCGTGTCACCGAGCG
ACTTGCCGTGCTCCGCTCTGGGGGCCCGCGTGGATTTAGACGCTATGAAG
GGCGAAGCAGGGTTCTTGCTCCCCACGGATACCTTCCAGGGACATGCCTC
GTTTTCCGTAGGTGAGGAGGACTTTGACTTGATCGAGGCGCATGGCGAGA
CGCATGACATGCTGATCGTGTGGTTGCCGAAGCAGAAGGTGCTGCTGCCG
GGCGATAATTACTACCGAGCCTTCCCCAACCTCTACACCATCCGCGGCAC
CACCCCACGTCCCGTCCGCGCCTGGATTCAATCTTTGGACACCATGCGGA
AGCTTAAGCCCGAATATTTGGTGCCTTCGCACACTGAACCTGTTTTCGGA
CTTGAAACTGTGTCTAAGCAATTGACTGATTACCGTGATGGGATCCAGTG
GGTGTATGTGGAGACGATCCGCGGGGCTAATGAGGGGAAGAGCATGGACG
AGCTGGCCTCCTCGGTGGGATTGCCATTGCATTTAAGAGATAATGATGCG
CTGGACGAGCTGTATGGACAAATCGATTGGTCCGTGAGGGCGATTTATTC
GGGGGAGCTGGGCTGGTTTGATGGGCAGGCGGAGGAGCTCTACCCGCTCG
GCCACGAGGAAGAGTCGCAAAAGACGGTCCTCCTCATGGGCGGGGCGTCC
AAAGTACTCAAAGCAGTGGAAGACGCGCAAGCCATGAACGATCACCGATG
GGCACTGCATCTCCTCCATATGCTGCGTGCCGTCCAAAAAAAGGACAAAT
CCGTCTCGCGTAAGATTCTCAAAGCGCTAGAAGCTGCCAGCTTGCGTGCC
TTGGGTCGGACAATTTTCAATACCAACGGCAGGGCTTACTTGCTGCAGAC
GGCGTTGGAAAGAGAGGGGAATAGTCCACGGGCTGAGACCAAGCCAGTGC
TGTCGGATGCGTTCATTGACTCCATTCCTATTTCACTGGTATTTGAAGTA
ATGCAAACCAGGCTACGACCAGAGCTTTCAATTGACGTGCATGAGTCAGC
CATATTCCTTGTTGGGGGGTCAAAGCACATTGTGACGGTGCGGAGGGGCG
TGGCGGAGGTGACGAAGGGTGATGCTTTGCATGGAACTCCTGAACCTATT
GGAACATTTATTGCGGATGAGAATACGTTCCGACGAATCATGTTGCAGCT
GAAATCTCCGGGGAAGGCTATTATGAATGGCGATGTACGGATTGAAGGGG
ACCAGCTTAAGTTCCTTGTGTTCGTGCAGCGATTTGAGCGGGGTGCTTAA
AATTGAGAACGAAAAACGCATGCATGGATTCCTAGGGGCATGTGTGAGGT
TCAATGGAATGTGGATTGGGGATAGGATGGGGGGGAATGTCAAGGGGATG
CTTGAAAATGAACGATACCGGCAGAAATAGAGATGGAGGTATATGGATAA
ATAACAAAATCAAAGAATTACGGGAAAATAATGCACGGTCGTACAAG

protein sequence of NO03G03540.1

>NO03G03540.1-protein ID=NO03G03540.1-protein|Name=NO03G03540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=640bp
MARTAKRSDDETDGNGSQTGDMPPRAPPRLRKRQSSHRRNAGRGPAGARS
GWALIWLVALGGVLGLLLYSYRTLVPRAQIVESQRKMPTPVVLEHHCKEH
IGPPRVIRVTDTVWVAVGYDLANTILIKTSAGHVIVDVAMSPSKARVIRQ
ALIEAAGNAPIHTIIYTHSHIDHVGGASGWAANATKIWATDAVTGHFFKQ
YGVFRKVESLRGSRQYGYLVSPSDLPCSALGARVDLDAMKGEAGFLLPTD
TFQGHASFSVGEEDFDLIEAHGETHDMLIVWLPKQKVLLPGDNYYRAFPN
LYTIRGTTPRPVRAWIQSLDTMRKLKPEYLVPSHTEPVFGLETVSKQLTD
YRDGIQWVYVETIRGANEGKSMDELASSVGLPLHLRDNDALDELYGQIDW
SVRAIYSGELGWFDGQAEELYPLGHEEESQKTVLLMGGASKVLKAVEDAQ
AMNDHRWALHLLHMLRAVQKKDKSVSRKILKALEAASLRALGRTIFNTNG
RAYLLQTALEREGNSPRAETKPVLSDAFIDSIPISLVFEVMQTRLRPELS
IDVHESAIFLVGGSKHIVTVRRGVAEVTKGDALHGTPEPIGTFIADENTF
RRIMLQLKSPGKAIMNGDVRIEGDQLKFLVFVQRFERGA*

mRNA from alignment at chr3:1056799..1059264-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G03540.1 ID=NO03G03540.1|Name=NO03G03540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2466bp|location=Sequence derived from alignment at chr3:1056799..1059264- (Nannochloropsis oceanica)
ACAGAGAGCAGCAGTGGTGCAAGCACCGCTTGCTACCACGAGGAGCCTCT
AGCGCAAGTCCCGCACCACATTGCGTACAAATGGCGCGCACGGCCAAGCG
CTCGGACGACGAAACTGACGGTAATGGCAGTCAAACTGGTGACATGCCGC
CTCGTGCACCCCCCCGACTGAGGAAGCGGCAGTCGTCCCACAGAAGGAAC
GCCGGGAGAGGACCGGCGGGAGCACGGAGTGGCTGGGCGTTGATTTGGCT
GGTGGCTCTTGGGGGCGTTTTGGGCCTGTTACTCTATTCATATCGCACAC
TGGTCCCGCGGGCACAAATCGTCGAGTCTCAACGGAAGATGCCCACCCCA
GTTGTCCTGGAGCATCATTGCAAGGAGCACATTGGACCGCCGCGGGTCAT
TCGAGTGACCGACACGGTGTGGGTAGCCGTGGGCTACGACTTGGCCAATA
CCATTTTGATCAAGACTAGCGCGGGGCATGTAATTGTCGATGTTGCCATG
AGCCCTTCCAAGGCTAGGGTAATTCGTCAGGCGCTTATTGAGGCTGCTGG
GAATGCTCCTATACATACCATTATCTACACGCACTCCCACATTGACCATG
TTGGGGGTGCGTCAGGCTGGGCCGCCAATGCTACAAAGATATGGGCCACG
GATGCGGTGACGGGGCATTTTTTCAAACAGTACGGGGTGTTTCGCAAGGT
ACACATCGAGATGGCGGTAGCGTGGTATAGAGAGGTGGAGGATGGTGGAA
TGTAATCGACAGGGCATGCATAATACAAGCTACTTCAATCCACCTCACCC
ATGCACACTTAACACTCCATTCCTGCTCTCAAACCCTACACCAGGTCGAA
AGTTTGCGAGGATCCCGTCAATACGGCTACCTCGTGTCACCGAGCGACTT
GCCGTGCTCCGCTCTGGGGGCCCGCGTGGATTTAGACGCTATGAAGGGCG
AAGCAGGGTTCTTGCTCCCCACGGATACCTTCCAGGGACATGCCTCGTTT
TCCGTAGGTGAGGAGGACTTTGACTTGATCGAGGCGCATGGCGAGACGCA
TGACATGCTGATCGTGTGGTTGCCGAAGCAGAAGGTGCTGCTGCCGGGCG
ATAATTACTACCGAGCCTTCCCCAACCTCTACACCATCCGCGGCACCACC
CCACGTCCCGTCCGCGCCTGGATTCAATCTTTGGACACCATGCGGAAGCT
TAAGCCCGAATATTTGGTGCCTTCGCACACTGAACCTGTTTTCGGACTTG
AAACTGTGTCTAAGCAATTGACTGATTACCGTGATGGGATCCAGTGGGTG
TATGTGGAGACGATCCGCGGGGCTAATGAGGGGAAGAGCATGGACGAGCT
GGCCTCCTCGGTGGGATTGCCATTGCATTTAAGAGATAATGATGCGCTGG
ACGAGCTGTATGGACAAATCGATTGGTCCGTGAGGGCGATTTATTCGGGG
GAGCTGGGCTGGTTTGATGGGCAGGCGGAGGTAAGGGAAAAGAAGGGAGA
GTGTTGGGGAAATGATTTGTATCTTGCTTTTTACTGCATTCCTATAAATT
GTTTGTACCCAGACATGTATTATCCTCCACTCCGTTCTTTTCTCATTCCT
CAGGAGCTCTACCCGCTCGGCCACGAGGAAGAGTCGCAAAAGACGGTCCT
CCTCATGGGCGGGGCGTCCAAAGTACTCAAAGCAGTGGAAGACGCGCAAG
CCATGAACGATCACCGATGGGCACTGCATCTCCTCCATATGCTGCGTGCC
GTCCAAAAAAAGGACAAATCCGTCTCGCGTAAGATTCTCAAAGCGCTAGA
AGCTGCCAGCTTGCGTGCCTTGGGTCGGACAATTTTCAATACCAACGGCA
GGGCTTACTTGCTGCAGACGGCGTTGGAAAGAGAGGGGAATAGTCCACGG
GCTGAGACCAAGCCAGTGCTGTCGGATGCGTTCATTGACTCCATTCCTAT
TTCACTGGTATTTGAAGTAATGCAAACCAGGCTACGACCAGAGCTTTCAA
TTGACGTGCATGAGTCAGCCATATTCCTTGTTGGGGGGTCAAAGCACATT
GTGACGGTGCGGAGGGGCGTGGCGGAGGTGACGAAGGGTGATGCTTTGCA
TGGAACTCCTGAACCTATTGGAACATTTATTGCGGATGAGAATACGTTCC
GACGAATCATGTTGCAGCTGAAATCTCCGGGGAAGGCTATTATGAATGGC
GATGTACGGATTGAAGGGGACCAGCTTAAGTTCCTTGTGTTCGTGCAGCG
ATTTGAGCGGGGTGCTTAAAATTGAGAACGAAAAACGCATGCATGGATTC
CTAGGGGCATGTGTGAGGTTCAATGGAATGTGGATTGGGGATAGGATGGG
GGGGAATGTCAAGGGGATGCTTGAAAATGAACGATACCGGCAGAAATAGA
GATGGAGGTATATGGATAAATAACAAAATCAAAGAATTACGGGAAAATAA
TGCACGGTCGTACAAG

Coding sequence (CDS) from alignment at chr3:1056799..1059264-

>NO03G03540.1 ID=NO03G03540.1|Name=NO03G03540.1|organism=Nannochloropsis oceanica|type=CDS|length=1920bp|location=Sequence derived from alignment at chr3:1056799..1059264- (Nannochloropsis oceanica)
ATGGCGCGCACGGCCAAGCGCTCGGACGACGAAACTGACGGTAATGGCAG
TCAAACTGGTGACATGCCGCCTCGTGCACCCCCCCGACTGAGGAAGCGGC
AGTCGTCCCACAGAAGGAACGCCGGGAGAGGACCGGCGGGAGCACGGAGT
GGCTGGGCGTTGATTTGGCTGGTGGCTCTTGGGGGCGTTTTGGGCCTGTT
ACTCTATTCATATCGCACACTGGTCCCGCGGGCACAAATCGTCGAGTCTC
AACGGAAGATGCCCACCCCAGTTGTCCTGGAGCATCATTGCAAGGAGCAC
ATTGGACCGCCGCGGGTCATTCGAGTGACCGACACGGTGTGGGTAGCCGT
GGGCTACGACTTGGCCAATACCATTTTGATCAAGACTAGCGCGGGGCATG
TAATTGTCGATGTTGCCATGAGCCCTTCCAAGGCTAGGGTAATTCGTCAG
GCGCTTATTGAGGCTGCTGGGAATGCTCCTATACATACCATTATCTACAC
GCACTCCCACATTGACCATGTTGGGGGTGCGTCAGGCTGGGCCGCCAATG
CTACAAAGATATGGGCCACGGATGCGGTGACGGGGCATTTTTTCAAACAG
TACGGGGTGTTTCGCAAGGTCGAAAGTTTGCGAGGATCCCGTCAATACGG
CTACCTCGTGTCACCGAGCGACTTGCCGTGCTCCGCTCTGGGGGCCCGCG
TGGATTTAGACGCTATGAAGGGCGAAGCAGGGTTCTTGCTCCCCACGGAT
ACCTTCCAGGGACATGCCTCGTTTTCCGTAGGTGAGGAGGACTTTGACTT
GATCGAGGCGCATGGCGAGACGCATGACATGCTGATCGTGTGGTTGCCGA
AGCAGAAGGTGCTGCTGCCGGGCGATAATTACTACCGAGCCTTCCCCAAC
CTCTACACCATCCGCGGCACCACCCCACGTCCCGTCCGCGCCTGGATTCA
ATCTTTGGACACCATGCGGAAGCTTAAGCCCGAATATTTGGTGCCTTCGC
ACACTGAACCTGTTTTCGGACTTGAAACTGTGTCTAAGCAATTGACTGAT
TACCGTGATGGGATCCAGTGGGTGTATGTGGAGACGATCCGCGGGGCTAA
TGAGGGGAAGAGCATGGACGAGCTGGCCTCCTCGGTGGGATTGCCATTGC
ATTTAAGAGATAATGATGCGCTGGACGAGCTGTATGGACAAATCGATTGG
TCCGTGAGGGCGATTTATTCGGGGGAGCTGGGCTGGTTTGATGGGCAGGC
GGAGGAGCTCTACCCGCTCGGCCACGAGGAAGAGTCGCAAAAGACGGTCC
TCCTCATGGGCGGGGCGTCCAAAGTACTCAAAGCAGTGGAAGACGCGCAA
GCCATGAACGATCACCGATGGGCACTGCATCTCCTCCATATGCTGCGTGC
CGTCCAAAAAAAGGACAAATCCGTCTCGCGTAAGATTCTCAAAGCGCTAG
AAGCTGCCAGCTTGCGTGCCTTGGGTCGGACAATTTTCAATACCAACGGC
AGGGCTTACTTGCTGCAGACGGCGTTGGAAAGAGAGGGGAATAGTCCACG
GGCTGAGACCAAGCCAGTGCTGTCGGATGCGTTCATTGACTCCATTCCTA
TTTCACTGGTATTTGAAGTAATGCAAACCAGGCTACGACCAGAGCTTTCA
ATTGACGTGCATGAGTCAGCCATATTCCTTGTTGGGGGGTCAAAGCACAT
TGTGACGGTGCGGAGGGGCGTGGCGGAGGTGACGAAGGGTGATGCTTTGC
ATGGAACTCCTGAACCTATTGGAACATTTATTGCGGATGAGAATACGTTC
CGACGAATCATGTTGCAGCTGAAATCTCCGGGGAAGGCTATTATGAATGG
CGATGTACGGATTGAAGGGGACCAGCTTAAGTTCCTTGTGTTCGTGCAGC
GATTTGAGCGGGGTGCTTAA

Synonyms

Publications