NO03G03310.1, NO03G03310.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G03310.1
Unique Name	NO03G03310.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3680
Alignment location	chr3:989114..993146 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:989114..993146 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G03310.1 vs.
Match: EWM29746.1 (uncharacterized protein Naga_100022g8 [Nannochloropsis gaditana])

HSP 1 Score: 423.7 bits (1088), Expect = 3.600e-115
Identity = 199/225 (88.44%), Postives = 212/225 (94.22%), Query Frame = 0

Query:    1 MSCRGEHIDSCGHGHDHGHGEECDHEAEDPDGQSMYSAIDTSKVRCLNESEFGACLHPFKPYSRRREAEPCLDSHDDDPELLLFVPFTRVVKLKSINIIGGHAGEGTAPTKIKLFMNRDDIDFSNCGELPAAQELELVANAASMGDGGGIDYPLKVSKFQNVDSLTIFFSENEGSDVTSVSYVGFKGEVTTARHGVVECVYESAPQAADHKQDAGEFLLPDVSGN 226
            MSCRG+HIDSCGHGHDH HGEECDHEAEDPDGQSM++AIDTSKVRCLNE+E GACLHPFK Y++RRE EP LDSHDDDPELLLFVPFTR+VKLKSINIIGGHAGEGTAPTKIKLF+NRDDIDF NC EL AAQELELVANAA+MGDGGGIDYPLKVSKFQNV SLTIFFSEN G DVTSVSYVGFKGE+T+ RHGVVECVYESAPQAADHKQDAGE L+PDV+GN
Sbjct:    1 MSCRGDHIDSCGHGHDHAHGEECDHEAEDPDGQSMFAAIDTSKVRCLNENEIGACLHPFKLYNKRREPEPRLDSHDDDPELLLFVPFTRIVKLKSINIIGGHAGEGTAPTKIKLFVNRDDIDFGNCNELMAAQELELVANAAAMGDGGGIDYPLKVSKFQNVSSLTIFFSENGGGDVTSVSYVGFKGEITSVRHGVVECVYESAPQAADHKQDAGEHLMPDVAGN 225

The following BLAST results are available for this feature:

BLAST of NO03G03310.1 vs.

BLAST of NO03G03310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29746.1	3.600e-115	88.44	uncharacterized protein Naga_100022g8 [Nannochloro...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G03310	NO03G03310	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G03310.1	NO03G03310.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G03310.1.cds1	NO03G03310.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G03310.1.cds2	NO03G03310.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G03310.1.cds3	NO03G03310.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:989114..993146-
coding sequence from alignment at chr3:989114..993146-

mRNA sequence

>NO03G03310.1 ID=NO03G03310.1|Name=NO03G03310.1|organism=Nannochloropsis oceanica|type=mRNA|length=3680bp
CAAAAAGTGGCATGGGCCGTGAGTAGTGAGTGAGTTTGGCTATGGGCCAG
TAAGGCCGGTCTCCTTTGTCAAAATGCACGGTTCTGATTAAAGAGCGAGC
ATTTGCTGACATCCTTGCATGCATTCATAATTTAAGTACTTTCTTGGGGG
GGGCGCCGATCAAAAAAGCGAATCGCCTGCATTTCGTAAGTCGTTGTGAG
TCACACACACATCGTGACATCATCACATTAATAGCAGAACTCTGTTGAAA
AGCACAACATACTGCCTTCCTGTTTTGCTTCTCACACCCACAACACATCC
CCCTGCCCACCCCAGCATCGTTAAGGGTGCTAGATCACACTAGGAGAGCA
GGAGGAATGAGCTGCCGGGGTGAGCACATTGATTCCTGTGGGCACGGCCA
CGACCACGGTCACGGAGAAGAATGCGACCATGAGGCCGAGGACCCCGATG
GGCAGTCCATGTATTCAGCTATTGATACGAGCAAGGTCCGCTGTTTAAAC
GAGAGTGAGTTCGGTGCGTGCCTGCATCCTTTCAAGCCCTACAGTCGACG
CCGGGAGGCCGAACCCTGCCTAGACAGCCACGACGACGACCCGGAGCTAC
TGCTCTTTGTGCCGTTTACCCGCGTTGTCAAACTCAAGAGCATCAATATA
ATTGGGGGCCATGCAGGTGAGGGCACAGCACCGACCAAGATCAAACTCTT
CATGAATCGAGACGACATCGATTTCAGCAACTGTGGGGAGCTACCTGCGG
CACAAGAATTGGAGCTGGTAGCGAACGCGGCCTCTATGGGAGATGGGGGT
GGAATCGATTATCCTTTAAAAGTGAGCAAGTTTCAGAATGTTGACAGCTT
GACCATTTTCTTTAGTGAAAATGAGGGGAGTGATGTGACGTCGGTGTCGT
ATGTGGGGTTTAAAGGCGAGGTGACGACGGCGCGGCATGGGGTGGTGGAA
TGTGTATACGAGTCGGCGCCTCAGGCGGCGGATCACAAGCAGGATGCGGG
GGAATTTTTATTGCCGGATGTGTCAGGAAATTAAGATGATAAAAAACAGT
AAAACGAGACGGCTGGAAGCGCAAAAAAATGACATGTCGTACTTGTAGAT
ACATCAAAATGGAGCTAAACGAAAAGAAAGAGACGAAGAGGGTGCGGAGA
CAAAGAGAGTGTGCATGTATGAGTGTGTGTGGATGAGCGGGTTTTACTCC
ACGCCTTATTTTCTCGAAGACTGGTTTCAGTTTTTCGTTTCCTTTCATTA
AATATATTTGGGTTTTGGTTTAGTCGTGCCTAGGCTGGAAAGTGGCCGTC
GATGGCGCAAGATATGGAGGGATGCACAGGAGGCTCTCTCATTAAAATGC
TGCAGCCCTCATCGTTGTAACTTCCTTGCTTGCTTCTGTACCGTGCCGAT
ATAACATAGAATTATTTCGTTCACTATCGTAAACAAATGGTTTTCAATCA
GGAGACCACCCCCAAAAGACACCTCTGCTCCAACCCTGTGAGCAGAGCCC
TCCTTCCTTACCTCTTGCTCCTCCCCTTCCTCCTTTTCATCTCCACCAAA
TATATCAACACAAAGGCAATTTTTTTACCCAGCAAGCTACCTATCCCTTC
CCTCCTTTACGTCCCTAGGGTCTTTACTCGTCACCCTGCAGCAAAATATC
AATAAATCCTACTCGGGAACGGACCAAATGATCATACCCCCACGCTACCT
GCACGCTCTCCACCTGGAATCCCTCATTCAAATACGGGAACAGGTCATCC
TCCCTGCCCCCCCCCACCACATAACCAATCAATGTAAATTTTCCGTCAAG
CCCCTTCGCCGAATCCACACACCGCGCGTCATCTTTCAACCAAAAAAATT
CGCTATTCGCGCCGTTTCCGTCCTGCTCTGGGTGTAGCAAGCCCACCGCT
CGTGGGGTCCGATAGCTCAACAAAGGCGGCGCCCGTGTGAATATCCCAGT
ATTTCTTGCCTGCCCATAAAAAGGTTTGTTCCCCTCCGCCTCCGCACGCA
TTACTTCCAAGGGCACCCGGCGTTGTTTTCCCGTAATGGGGTCAATAAAC
CCTGTCTTGTACCTCCCCCCCACCACCAGCTCCACCTCGCCTCCCTCCTT
ACTCGCACTCCGAACCTTCTCCTTCACCAGCGGCAATCGGTTATAAAATC
CCCGCTGGCATAAGTCTATAAAGTTACCCGCCGAAATGGGCGCATTGAAC
CCGTCGACGACAATAGTGATATTTCCCATTCGGAGCTCGTCATCCTTCGC
ACCATTTTCTTTCGGCAATTCCCTCACAAAGAACGTCGCCTCCGCCCGCC
CAAACAACCGCGGCAAATTAAAATAATCGTCTTCTCGACGATCATCATTC
TTGGGCGGAGAGAAAGGAAATTTGGCCACCATCAACTCGCCTAAATGCCC
AAGATGCAGCAAAGACTCCTCTTGGTACCTCAACGTATCCGATACACTTT
CCCTTTTTGTCGCATTCTCCAAGCTTGCAATTGCATCATCTAGCAACAAT
AGCTCGTTAGCAAACCGTGCCCGGCGCCGGGATTGCGACTCGGCGGTAGT
GTTGGGTCGGATGGTTAAGGCATAAGGAAAAGCGTCCTTTTCCCTGTTGT
ACGTTGCACGTACATTTTCAGCCAGTCCTTTGATTTTTGCCCAACGAAAG
GTTGATATGTCTTCACCGTTGGCGCTTTCCATTGCATCAAATGCCGTTGT
TCCGTTGGCTCCTGTTGCGTGTGACTCGGGTGCGACGAAACTGAGGTCCG
CCTGGACTTGACCTGCCTCGTTACAGAACCCGGTTCCTTGCAGCACGTTC
AACCCCCGCAACTCATTGATCCTACTAAGTGCTTGCCCCATGCTCTTGAT
GGCTTGATTATCTAAGGGAAGGGACTCGACGAGCACTGATTCGGGTAGTA
CTCCGTCAAGGAGCCCGCCTTTGGTCACCCATGGGAACTCTTCAAGCGCT
GCTTGTGCAACTCCCTTCTTGCCTGGTGTTGGTGCGGCAATCGTCAGCAG
GGCAGGGACTAATGCGGAAGCTACACCTATGGCTCTACGCCGGCTCAGAG
TGCTCCAGTTTTGCGCAACTCGACTGGTGCGGTGGGATCGGTAGGGTGAC
GGGGGTAGTGGTGTTGATTTCGATAATGGCGGTGGTGGCTGGTCCTCTGA
GGGTGCTGTCTGTGCTAAGCCCGGGAAAGAATCATGTCTTCTACGCGACG
TGGAGGTAGAGGAGGGGAGAGGCATGCGGATGAAGGCTGACGATGCGGGT
AGGATAAAGAAGAGGAGGCAAACAGGCAGCAGGGCTGGGAGGAGGCCACG
CATGGCTGCTTGAAAAGAGCGCCGTGGAATGTAATGGAGACGCTTCGCGA
AATGCTACCCAGACTCCTGCTGTTGCTACTGGTTGTGCATTTAGAACTTC
CCGCTGCCTCCTGTACACGTGGTGTGTGTGGGTCGCCGTGCATTAGGTGT
TGCGTGGGACCAGAGAAGTGCGCTTGCTTCAATGAGCTGGGATACGACAT
GCTATTTTGATGACCCTACTTGTCGACCCATCTAAGTCAAAGAAAGGCAG
CGAAGCAGGAGGCGAGCACAAGGAGGGGAGACCGAACTAATGCTTCACAA
GCTCATGCGGGACTGGCGGGCGTGGATGGATAAAGCTATGCATTTGACAT
ACAAATGGGAGTACTTCTATCGCGAATCGC

protein sequence of NO03G03310.1

>NO03G03310.1-protein ID=NO03G03310.1-protein|Name=NO03G03310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MSCRGEHIDSCGHGHDHGHGEECDHEAEDPDGQSMYSAIDTSKVRCLNES
EFGACLHPFKPYSRRREAEPCLDSHDDDPELLLFVPFTRVVKLKSINIIG
GHAGEGTAPTKIKLFMNRDDIDFSNCGELPAAQELELVANAASMGDGGGI
DYPLKVSKFQNVDSLTIFFSENEGSDVTSVSYVGFKGEVTTARHGVVECV
YESAPQAADHKQDAGEFLLPDVSGN*

mRNA from alignment at chr3:989114..993146-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G03310.1 ID=NO03G03310.1|Name=NO03G03310.1|organism=Nannochloropsis oceanica|type=mRNA|length=4033bp|location=Sequence derived from alignment at chr3:989114..993146- (Nannochloropsis oceanica)
CAAAAAGTGGCATGGGCCGTGAGTAGTGAGTGAGTTTGGCTATGGGCCAG
TAAGGCCGGTCTCCTTTGTCAAAATGCACGGTTCTGATTAAAGAGCGAGC
ATTTGCTGACATCCTTGCATGCATTCATAATTTAAGTACTTTCTTGGGGG
GGGCGCCGATCAAAAAAGCGAATCGCCTGCATTTCGTAAGTCGTTGTGAG
TCACACACACATCGTGACATCATCACATTAATAGCAGAACTCTGTTGAAA
AGCACAACATACTGCCTTCCTGTTTTGCTTCTCACACCCACAACACATCC
CCCTGCCCACCCCAGCATCGTTAAGGGTGCTAGATCACACTAGGAGAGCA
GGAGGAATGAGCTGCCGGGGTGAGCACATTGATTCCTGTGGGCACGGCCA
CGACCACGGTCACGGAGAAGAATGGTGAGCGAGCGCTGGAAGTATCATGA
CTTAGCGTCGAGAAGGACATAAGTGGTGGTAGAGTGCTTGTTTGCAGCGT
GCGGAGTAGGGATTTTGTGTATACTTGTTTCTATCAGTGGCATCGTGCGT
CTCTTTAGGGAAGAGCCGCGGTCAGCCTCCTCCTTTGCCTCCTCTCTCTC
CCCTTCACCAATCTTACACTCCTCATTCATTCGTTCCTGTAACACAGCGA
CCATGAGGCCGAGGACCCCGATGGGCAGTCCATGTATTCAGCTATTGATA
CGAGCAAGGTCCGCTGTTTAAACGAGAGTGAGTTCGGTGCGTGCCTGCAT
CCTTTCAAGCCCTACAGTCGACGCCGGGAGGCCGAACCCTGCCTAGACAG
CCACGACGACGACCCGGAGCTACTGCTCTTTGTGCCGTTTACCCGCGTTG
TCAAACTCAAGAGCATCAATATAATTGGGGGCCATGCAGGTGAGGGCACA
GCACCGACCAAGATCAAACTGTAAGTAGGAAGGGTTGAGTTTTTTAATGC
GGACCTCTGATGTTGTAGCGCTTCTTCCTTTTCTCGTTCTCTCCCTACTT
CTCTTATTCCCATGCCATTCCTTTGTCTACCCCATTTTAACTCCTCTTAG
CTTCATGAATCGAGACGACATCGATTTCAGCAACTGTGGGGAGCTACCTG
CGGCACAAGAATTGGAGCTGGTAGCGAACGCGGCCTCTATGGGAGATGGG
GGTGGAATCGATTATCCTTTAAAAGTGAGCAAGTTTCAGAATGTTGACAG
CTTGACCATTTTCTTTAGTGAAAATGAGGGGAGTGATGTGACGTCGGTGT
CGTATGTGGGGTTTAAAGGCGAGGTGACGACGGCGCGGCATGGGGTGGTG
GAATGTGTATACGAGTCGGCGCCTCAGGCGGCGGATCACAAGCAGGATGC
GGGGGAATTTTTATTGCCGGATGTGTCAGGAAATTAAGATGATAAAAAAC
AGTAAAACGAGACGGCTGGAAGCGCAAAAAAATGACATGTCGTACTTGTA
GATACATCAAAATGGAGCTAAACGAAAAGAAAGAGACGAAGAGGGTGCGG
AGACAAAGAGAGTGTGCATGTATGAGTGTGTGTGGATGAGCGGGTTTTAC
TCCACGCCTTATTTTCTCGAAGACTGGTTTCAGTTTTTCGTTTCCTTTCA
TTAAATATATTTGGGTTTTGGTTTAGTCGTGCCTAGGCTGGAAAGTGGCC
GTCGATGGCGCAAGATATGGAGGGATGCACAGGAGGCTCTCTCATTAAAA
TGCTGCAGCCCTCATCGTTGTAACTTCCTTGCTTGCTTCTGTACCGTGCC
GATATAACATAGAATTATTTCGTTCACTATCGTAAACAAATGGTTTTCAA
TCAGGAGACCACCCCCAAAAGACACCTCTGCTCCAACCCTGTGAGCAGAG
CCCTCCTTCCTTACCTCTTGCTCCTCCCCTTCCTCCTTTTCATCTCCACC
AAATATATCAACACAAAGGCAATTTTTTTACCCAGCAAGCTACCTATCCC
TTCCCTCCTTTACGTCCCTAGGGTCTTTACTCGTCACCCTGCAGCAAAAT
ATCAATAAATCCTACTCGGGAACGGACCAAATGATCATACCCCCACGCTA
CCTGCACGCTCTCCACCTGGAATCCCTCATTCAAATACGGGAACAGGTCA
TCCTCCCTGCCCCCCCCCACCACATAACCAATCAATGTAAATTTTCCGTC
AAGCCCCTTCGCCGAATCCACACACCGCGCGTCATCTTTCAACCAAAAAA
ATTCGCTATTCGCGCCGTTTCCGTCCTGCTCTGGGTGTAGCAAGCCCACC
GCTCGTGGGGTCCGATAGCTCAACAAAGGCGGCGCCCGTGTGAATATCCC
AGTATTTCTTGCCTGCCCATAAAAAGGTTTGTTCCCCTCCGCCTCCGCAC
GCATTACTTCCAAGGGCACCCGGCGTTGTTTTCCCGTAATGGGGTCAATA
AACCCTGTCTTGTACCTCCCCCCCACCACCAGCTCCACCTCGCCTCCCTC
CTTACTCGCACTCCGAACCTTCTCCTTCACCAGCGGCAATCGGTTATAAA
ATCCCCGCTGGCATAAGTCTATAAAGTTACCCGCCGAAATGGGCGCATTG
AACCCGTCGACGACAATAGTGATATTTCCCATTCGGAGCTCGTCATCCTT
CGCACCATTTTCTTTCGGCAATTCCCTCACAAAGAACGTCGCCTCCGCCC
GCCCAAACAACCGCGGCAAATTAAAATAATCGTCTTCTCGACGATCATCA
TTCTTGGGCGGAGAGAAAGGAAATTTGGCCACCATCAACTCGCCTAAATG
CCCAAGATGCAGCAAAGACTCCTCTTGGTACCTCAACGTATCCGATACAC
TTTCCCTTTTTGTCGCATTCTCCAAGCTTGCAATTGCATCATCTAGCAAC
AATAGCTCGTTAGCAAACCGTGCCCGGCGCCGGGATTGCGACTCGGCGGT
AGTGTTGGGTCGGATGGTTAAGGCATAAGGAAAAGCGTCCTTTTCCCTGT
TGTACGTTGCACGTACATTTTCAGCCAGTCCTTTGATTTTTGCCCAACGA
AAGGTTGATATGTCTTCACCGTTGGCGCTTTCCATTGCATCAAATGCCGT
TGTTCCGTTGGCTCCTGTTGCGTGTGACTCGGGTGCGACGAAACTGAGGT
CCGCCTGGACTTGACCTGCCTCGTTACAGAACCCGGTTCCTTGCAGCACG
TTCAACCCCCGCAACTCATTGATCCTACTAAGTGCTTGCCCCATGCTCTT
GATGGCTTGATTATCTAAGGGAAGGGACTCGACGAGCACTGATTCGGGTA
GTACTCCGTCAAGGAGCCCGCCTTTGGTCACCCATGGGAACTCTTCAAGC
GCTGCTTGTGCAACTCCCTTCTTGCCTGGTGTTGGTGCGGCAATCGTCAG
CAGGGCAGGGACTAATGCGGAAGCTACACCTATGGCTCTACGCCGGCTCA
GAGTGCTCCAGTTTTGCGCAACTCGACTGGTGCGGTGGGATCGGTAGGGT
GACGGGGGTAGTGGTGTTGATTTCGATAATGGCGGTGGTGGCTGGTCCTC
TGAGGGTGCTGTCTGTGCTAAGCCCGGGAAAGAATCATGTCTTCTACGCG
ACGTGGAGGTAGAGGAGGGGAGAGGCATGCGGATGAAGGCTGACGATGCG
GGTAGGATAAAGAAGAGGAGGCAAACAGGCAGCAGGGCTGGGAGGAGGCC
ACGCATGGCTGCTTGAAAAGAGCGCCGTGGAATGTAATGGAGACGCTTCG
CGAAATGCTACCCAGACTCCTGCTGTTGCTACTGGTTGTGCATTTAGAAC
TTCCCGCTGCCTCCTGTACACGTGGTGTGTGTGGGTCGCCGTGCATTAGG
TGTTGCGTGGGACCAGAGAAGTGCGCTTGCTTCAATGAGCTGGGATACGA
CATGCTATTTTGATGACCCTACTTGTCGACCCATCTAAGTCAAAGAAAGG
CAGCGAAGCAGGAGGCGAGCACAAGGAGGGGAGACCGAACTAATGCTTCA
CAAGCTCATGCGGGACTGGCGGGCGTGGATGGATAAAGCTATGCATTTGA
CATACAAATGGGAGTACTTCTATCGCGAATCGC

Coding sequence (CDS) from alignment at chr3:989114..993146-

>NO03G03310.1 ID=NO03G03310.1|Name=NO03G03310.1|organism=Nannochloropsis oceanica|type=CDS|length=678bp|location=Sequence derived from alignment at chr3:989114..993146- (Nannochloropsis oceanica)
ATGAGCTGCCGGGGTGAGCACATTGATTCCTGTGGGCACGGCCACGACCA
CGGTCACGGAGAAGAATGCGACCATGAGGCCGAGGACCCCGATGGGCAGT
CCATGTATTCAGCTATTGATACGAGCAAGGTCCGCTGTTTAAACGAGAGT
GAGTTCGGTGCGTGCCTGCATCCTTTCAAGCCCTACAGTCGACGCCGGGA
GGCCGAACCCTGCCTAGACAGCCACGACGACGACCCGGAGCTACTGCTCT
TTGTGCCGTTTACCCGCGTTGTCAAACTCAAGAGCATCAATATAATTGGG
GGCCATGCAGGTGAGGGCACAGCACCGACCAAGATCAAACTCTTCATGAA
TCGAGACGACATCGATTTCAGCAACTGTGGGGAGCTACCTGCGGCACAAG
AATTGGAGCTGGTAGCGAACGCGGCCTCTATGGGAGATGGGGGTGGAATC
GATTATCCTTTAAAAGTGAGCAAGTTTCAGAATGTTGACAGCTTGACCAT
TTTCTTTAGTGAAAATGAGGGGAGTGATGTGACGTCGGTGTCGTATGTGG
GGTTTAAAGGCGAGGTGACGACGGCGCGGCATGGGGTGGTGGAATGTGTA
TACGAGTCGGCGCCTCAGGCGGCGGATCACAAGCAGGATGCGGGGGAATT
TTTATTGCCGGATGTGTCAGGAAATTAA

Synonyms

Publications