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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:976010..979330 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G03280.1 vs.
Match: EWM29737.1 (cathepsin b [Nannochloropsis gaditana]) HSP 1 Score: 813.1 bits (2099), Expect = 5.200e-232 Identity = 385/482 (79.88%), Postives = 433/482 (89.83%), Query Frame = 0
Query: 84 LAVTVGV-----TAAVDVPFSSCSSSDALGVTKLVVSEWPIHPGHPTTFTVVFNPTKDIVSGTKLSAAVMIKNMQVFEHSVDMCSQTSLTCPLKAGEAVQVSATQTLPEGIPPVKDLKAVVQASDATGVISCTEVEIELAVGEYTLEHLGRLPAIDSSLVTDVLMSGTTWTPHFSPRFAGANLKQVQGMMGTWLRGHPLHMTLPYKDQVFGVTD-KGDNVTIPESFDSREAWPACSEVIGKVKDQSACGSCWAFASSAAFEDRQCIVHGSKDLLSPTDTLACCSGMACGFSQGCSGGQPAGAWAFFASQGVVSGGLFEEVGSGDSCLPYPFLTCAHHVEPTEELPACPAEDFETPKCKHSCSEEEFEKDYKEDKRMGTAGYAVRAKVEEIQKEIMENGPVSAAFTVYQDFLAYSGEGVYTHVTGAPLGGHAVKLIGWGVENGTPYWLVVNSWNKAWGDEGLFRIIRGQDECGFESDITAGSV 560
L V VG + AVDVPF++CS++DALGV+K+V+SEWP+HPGHP T +V F+P +DIV GT+L+A V I+NMQVFEHSVDMCS+TSLTCPLKAGE +QVSA+QTLPEGIPPV LK VVQA+D TGVISC EVE+ELAVGEY+L+HL RL AIDS+LVTD+LM+GTTWTPHFSPRFAGA LKQ QG+MGTWLRGHPLHMTL K+ V G KG+N+TIPE+FD+REAWP C+E+IG+VKDQSACGSCWAFASSAAFEDR CI HGSKDLLSPTDTLACC+GMACGFSQGC+GGQPAGAW+FFASQGVVSGGLFEEVG+G +C+PYPFLTCAHHVEPTEELPACPAEDFETP+C+H+CSEE +E+ Y DKRM GY+VRA VEEIQKEIME+GPVSAAFTVYQDFL YSGEGVY HVTGAPLGGHAVKLIGWG +NGTPYWLVVNSWNKAWGDEGLFRIIRGQDECGFESDITAGSV
Sbjct: 10 LTVVVGAALFLCSRAVDVPFATCSTTDALGVSKVVMSEWPLHPGHPVTLSVAFSPLQDIVFGTQLTAKVFIQNMQVFEHSVDMCSETSLTCPLKAGEDMQVSASQTLPEGIPPVSGLKVVVQATDDTGVISCIEVELELAVGEYSLDHLSRLSAIDSALVTDILMAGTTWTPHFSPRFAGATLKQAQGLMGTWLRGHPLHMTLKLKEIVMGPAALKGENMTIPEAFDAREAWPECAELIGRVKDQSACGSCWAFASSAAFEDRMCIAHGSKDLLSPTDTLACCTGMACGFSQGCNGGQPAGAWSFFASQGVVSGGLFEEVGTGTTCMPYPFLTCAHHVEPTEELPACPAEDFETPRCRHTCSEELYEETYSADKRMAKRGYSVRANVEEIQKEIMESGPVSAAFTVYQDFLTYSGEGVYQHVTGAPLGGHAVKLIGWGSDNGTPYWLVVNSWNKAWGDEGLFRIIRGQDECGFESDITAGSV 491
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G03280.1 ID=NO03G03280.1|Name=NO03G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2155bp AAATCATCAGGCTACGAGCACATGCCCGCTAAAGCCGTGCACACATGTGT ACCAGGGAGCCACTGGAAAGAGATCCAGGCTGGGGCCGTGTTGAGCCCTA GCGGGGCTCTTCAGTGCGGTGGTGCGAGAGAGAGCCGAGACGGCAACCAA ATTTCAAACGAGTATGCAGACCCCCACTCAAGCACCCACACCACCGGCAT ACTTACACACAACGCGCATCCACGACGACACGACACAGCGAAAATGCATT TTTTTGGGCGCAGCCTAGCCCTGGCTGTGACCGTGGGCGTGACAGCCGCC GTGGACGTCCCCTTTTCGTCTTGCTCCTCAAGCGATGCTCTAGGTGTGAC CAAATTGGTGGTGTCTGAATGGCCCATCCACCCAGGACATCCTACCACGT TTACGGTCGTTTTCAACCCGACCAAAGACATCGTGTCCGGGACTAAGCTA TCCGCCGCTGTCATGATCAAAAACATGCAGGTCTTCGAACACAGCGTGGA CATGTGCAGCCAAACCAGCCTGACCTGCCCTCTGAAAGCAGGCGAAGCCG TCCAAGTATCCGCTACCCAAACACTCCCCGAGGGTATTCCTCCCGTCAAG GACCTCAAGGCAGTCGTCCAGGCCTCGGATGCCACGGGCGTAATCAGTTG CACTGAGGTCGAGATTGAGCTGGCGGTGGGTGAGTATACTCTGGAGCACC TTGGGCGCCTCCCTGCAATTGATTCGTCATTGGTCACTGACGTGTTGATG AGCGGCACGACGTGGACGCCGCATTTCTCCCCCAGATTTGCTGGCGCGAA CCTGAAGCAAGTGCAGGGAATGATGGGGACGTGGCTGAGGGGGCATCCAT TGCACATGACTTTACCGTACAAGGACCAGGTTTTTGGTGTGACAGACAAA GGGGATAATGTGACGATTCCTGAAAGTTTCGACTCGCGAGAGGCGTGGCC GGCGTGTAGCGAGGTTATCGGCAAGGTCAAGGATCAGAGTGCCTGTGGCT CGTGCTGGGCTTTTGCCAGCTCTGCCGCTTTCGAGGACAGGCAGTGCATC GTGCACGGCTCCAAGGACCTCCTTTCCCCCACCGACACCCTCGCCTGCTG CAGTGGCATGGCCTGCGGATTTTCTCAAGGGTGCAGCGGCGGACAACCGG CTGGGGCCTGGGCCTTTTTCGCCTCCCAGGGGGTGGTGTCGGGCGGGCTG TTCGAAGAGGTCGGCTCGGGAGACTCGTGCTTGCCTTACCCTTTCTTGAC GTGTGCGCACCACGTGGAACCGACGGAAGAATTGCCTGCGTGCCCCGCGG AAGATTTTGAGACACCCAAATGCAAGCATAGTTGCTCGGAGGAAGAGTTC GAGAAGGACTATAAGGAGGACAAGCGGATGGGGACGGCCGGGTATGCCGT GAGGGCCAAGGTAGAGGAGATCCAGAAGGAAATCATGGAAAATGGGCCGG TGTCGGCGGCATTTACGGTGTATCAGGACTTTCTGGCCTACTCGGGGGAA GGCGTCTACACCCACGTAACGGGCGCACCGTTGGGGGGCCATGCGGTCAA GTTGATTGGGTGGGGCGTGGAGAACGGGACACCGTACTGGCTCGTCGTCA ACTCGTGGAACAAGGCATGGGGTGATGAGGGTCTTTTCCGCATTATCCGG GGACAGGACGAATGCGGATTTGAATCGGATATCACGGCAGGCAGTGTCTA ATAAAATCGAATCGGTTTCTTTAAAATCACAAGGAGGGGGGAAAGTGAGT AATCCAAGTGAGTTTTCCTCCCAACGACCAGCCGAGATTTTGGCTGCTGT TACGGAGTGCTTGCTTTTGAAAGAGAGATGCTTAGAACGTTGAGAGGGAA AAGATGAAAAGAGCGAGACACAGCAAGTGTTTCGGTGCCCCTTGAAGAGT AGACGAAAATATCGAAGAAGGAAATAAAAGAGGGGTGTAGAAGGACAAGG CATCCTGATTATCAGCATCGTCATAGTCATCATCATAATCATGATCAGCG ACCCCGCGGGAGCGGCGCAGATTCGGATGTAGGCAGCGAGAGAGTGGAGT ACATAAGCGACACGCAAAAAGGAGAAAAATGAGGGAATTAAAGGAGGAGA GAAAAAACATAAAATCGATTCAGGAGACGAGATCAAGACGTTGGTTTCCG GAGCT back to topprotein sequence of NO03G03280.1 >NO03G03280.1-protein ID=NO03G03280.1-protein|Name=NO03G03280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=560bp MPAKAVHTCVPGSHWKEIQAGAVLSPSGALQCGGARESRDGNQISNEYAD PHSSTHTTGILTHNAHPRRHDTAKMHFFGRSLALAVTVGVTAAVDVPFSS CSSSDALGVTKLVVSEWPIHPGHPTTFTVVFNPTKDIVSGTKLSAAVMIK NMQVFEHSVDMCSQTSLTCPLKAGEAVQVSATQTLPEGIPPVKDLKAVVQ ASDATGVISCTEVEIELAVGEYTLEHLGRLPAIDSSLVTDVLMSGTTWTP HFSPRFAGANLKQVQGMMGTWLRGHPLHMTLPYKDQVFGVTDKGDNVTIP ESFDSREAWPACSEVIGKVKDQSACGSCWAFASSAAFEDRQCIVHGSKDL LSPTDTLACCSGMACGFSQGCSGGQPAGAWAFFASQGVVSGGLFEEVGSG DSCLPYPFLTCAHHVEPTEELPACPAEDFETPKCKHSCSEEEFEKDYKED KRMGTAGYAVRAKVEEIQKEIMENGPVSAAFTVYQDFLAYSGEGVYTHVT GAPLGGHAVKLIGWGVENGTPYWLVVNSWNKAWGDEGLFRIIRGQDECGF ESDITAGSV* back to topmRNA from alignment at chr3:976010..979330- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G03280.1 ID=NO03G03280.1|Name=NO03G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=3321bp|location=Sequence derived from alignment at chr3:976010..979330- (Nannochloropsis oceanica) AAATCATCAGGCTACGAGCACATGCCCGCTAAAGCCGTGCACACATGTGT
ACCAGGGAGCCACTGGAAAGAGATCCAGGCTGGGGCCGTGTTGAGCCCTA
GCGGGGCTCTTCAGTGCGGTGGTGCGAGAGAGAGCCGAGACGGCAACCAA
ATTTCAAACGAGTATGCAGACCCCCACTCAAGCACCCACACCACCGGCAT
ACTTACACACAACGCGCATCCACGACGACACGACACAGCGAAAATGCATT
TTTTTGGGCGCAGCCTAGCCCTGGCTGTGACCGTGGGCGTGACAGCCGCC
GTGGACGTCCCCTTTTCGTCTTGCTCCTCAAGCGATGCTCTAGGTGAGTT
GCGTACTGATCGTTCTTTGTTTGTCCGTGAGTGTGTGTGGGTGCTCGCCT
GGACTGAGTGTAATAATTATGTGCCCATTTGAAGCATGTGTCTTGTCTTT
GGCCCCTTGGTTTATCTCAATGGCGTGTTGAGCCCGGAAATTCCTGCCTT
CCCTGTTGTCGCTGTGTTCCTCGCCGGGCCAGGGGCTCATTGGTTTATGC
TCATAGCCAAGATATTCATTATAATCTTGGTGACAGATGTAATCTATTTT
GATGTGTTAGTTTGTGTTCTACTTCCCTTTCGTATTGTTCCAGCATTTTT
CACACGCCGCTCACCATTTACACACCAAATTTTCAATACAACCCCTTCCC
CCACCCTCAAAAAGGTGTGACCAAATTGGTGGTGTCTGAATGGCCCATCC
ACCCAGGACATCCTACCACGTTTACGGTCGTTTTCAACCCGACCAAAGAC
ATCGTGTCCGGGACTAAGCTATCCGCCGCTGTCATGATCAAAAACATGCA
GGTATGAGTGTATACGTGTATTTGTGTGCGTCTGCATCCCTCTCTGTCTC
TCTCTGTCTCTCTCTGTGTCTATATATATGCATAGTAAGGTAAAATGTAA
GTAAGGTAAGGTGGTTCGAATTCGCTTGCGCGTTGGTGTCGTAAGCAGCT
GCAACAGCAGCCGCAACACCAGCAGCCGCAACACTAAAATTTACTCAAAT
CAATTCATGGTCCTCCCACGCTACAACACAGGTCTTCGAACACAGCGTGG
ACATGTGCAGCCAAACCAGCCTGACCTGCCCTCTGAAAGCAGGCGAAGCC
GTCCAAGTATCCGCTACCCAAACACTCCCCGAGGGTATTCCTCCCGTCAA
GGACCTCAAGGCAGTCGTCCAGGCCTCGGATGCCACGGGCGTAATCAGTT
GCACTGAGGTCGAGATTGAGCTGGCGGTGGGTGAGTATACTCTGGAGCAC
CTTGGGCGCCTCCCTGCAATTGATTCGTCATTGGTCACTGACGTGTTGAT
GAGCGGCACGACGTGGACGCCGCATTTCTCCCCCAGATTTGCTGGCGCGA
ACCTGAAGCAAGTGCAGGGAATGATGGGGACGTGGCTGAGGGGGCATCCA
TTGCACATGACTTTACCGTACAAGGACCAGGTTTTTGGTGTGACAGACAA
AGGGGATAATGTGACGATTCCTGAAAGTTTCGACTCGCGAGAGGCGTGGC
CGGCGTGTAGCGAGGTTATCGGCAAGGTATGGATGTAGGCAAGGGCACCG
CGGCGTACGATCTGTCATGTGAAGATGAATGTCACCTCTCCTCTCCTCCC
TCCTTCCTTCTTTCCGTAGGTCAAGGATCAGAGTGCCTGTGGCTCGTGCT
GGGCTTTTGCCAGCTCTGCCGCTTTCGAGGACAGGCAGTGCATCGGTACG
TCTCTATTCTATTCCCCCCCCCCCTTCCTCTCCAACTTTCTACTCACCCT
CCCTCCTTTCCTCCCTCTCTCCCTCCTTTTCTTGGCGTAGTGCACGGCTC
CAAGGACCTCCTTTCCCCCACCGACACCCTCGCCTGCTGCAGTGGCATGG
CCTGCGGATTTTCTCAAGGGTGCAGCGGCGGACAACCGGCTGGGGCCTGG
GCCTTTTTCGCCTCCCAGGGGGTGGTGTCGGGCGGGCTGTTCGAAGAGGT
CGGCTCGGGAGACTCGTGCTTGCCTTACCCTTTCTTGACGTGTGCGCACC
ACGTGGAACCGACGGAAGAATTGCCTGCGTGCCCCGCGGAAGATTTTGAG
ACACCCAAATGCAAGCATAGTTGCTCGGAGGAAGAGTTCGAGAAGGACTA
TAAGGAGGACAAGCGGATGGGGACGGCCGGGTATGCCGTGAGGGCCAAGG
TAGAGGAGATCCAGAAGGAAATCATGGAAAATGGGCCGGTGTCGGCGGCA
TTTACGGTGTATCAGGACTTTCTGGCCTACTCGGGGGAAGGCGTCTACAC
CCACGTAACGGGCGCACCGTTGGGGGGCCATGCGGTCAAGTAAGCGAGGG
GAAGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGATAGACTTCCGGACCTCATTCTATTCCC
TTTCGTTTTTCAAGTCATTCACTTAGTTTCATATTCCAAAAAAAAACTCT
TTCTGCGCAGGTTGATTGGGTGGGGCGTGGAGAACGGGACACCGTACTGG
CTCGTCGTCAACTCGTGGAACAAGGTACGATGGGAGAGATAGGGAGGGAT
GGAGGGATGGAGGGAGGGAGGGGGGGAGGGAAGGTTGTCTTTTCGTCATT
TTTTGCGTTTGTTGTTTTCTTGGCGATTTTTTGTCCGGGTGACATTTTTG
TCGAATTCGCGTGTCGCTTACAGAAGGCCACTCATGCCGACTCAAACGTG
GAAACATGCATACACCATGTACATTCCCAGGCATGGGGTGATGAGGGTCT
TTTCCGCATTATCCGGGGACAGGACGAATGCGGATTTGAATCGGATATCA
CGGCAGGCAGTGTCTAATAAAATCGAATCGGTTTCTTTAAAATCACAAGG
AGGGGGGAAAGTGAGTAATCCAAGTGAGTTTTCCTCCCAACGACCAGCCG
AGATTTTGGCTGCTGTTACGGAGTGCTTGCTTTTGAAAGAGAGATGCTTA
GAACGTTGAGAGGGAAAAGATGAAAAGAGCGAGACACAGCAAGTGTTTCG
GTGCCCCTTGAAGAGTAGACGAAAATATCGAAGAAGGAAATAAAAGAGGG
GTGTAGAAGGACAAGGCATCCTGATTATCAGCATCGTCATAGTCATCATC
ATAATCATGATCAGCGACCCCGCGGGAGCGGCGCAGATTCGGATGTAGGC
AGCGAGAGAGTGGAGTACATAAGCGACACGCAAAAAGGAGAAAAATGAGG
GAATTAAAGGAGGAGAGAAAAAACATAAAATCGATTCAGGAGACGAGATC
AAGACGTTGGTTTCCGGAGCT back to topCoding sequence (CDS) from alignment at chr3:976010..979330- >NO03G03280.1 ID=NO03G03280.1|Name=NO03G03280.1|organism=Nannochloropsis oceanica|type=CDS|length=1680bp|location=Sequence derived from alignment at chr3:976010..979330- (Nannochloropsis oceanica) ATGCCCGCTAAAGCCGTGCACACATGTGTACCAGGGAGCCACTGGAAAGA GATCCAGGCTGGGGCCGTGTTGAGCCCTAGCGGGGCTCTTCAGTGCGGTG GTGCGAGAGAGAGCCGAGACGGCAACCAAATTTCAAACGAGTATGCAGAC CCCCACTCAAGCACCCACACCACCGGCATACTTACACACAACGCGCATCC ACGACGACACGACACAGCGAAAATGCATTTTTTTGGGCGCAGCCTAGCCC TGGCTGTGACCGTGGGCGTGACAGCCGCCGTGGACGTCCCCTTTTCGTCT TGCTCCTCAAGCGATGCTCTAGGTGTGACCAAATTGGTGGTGTCTGAATG GCCCATCCACCCAGGACATCCTACCACGTTTACGGTCGTTTTCAACCCGA CCAAAGACATCGTGTCCGGGACTAAGCTATCCGCCGCTGTCATGATCAAA AACATGCAGGTCTTCGAACACAGCGTGGACATGTGCAGCCAAACCAGCCT GACCTGCCCTCTGAAAGCAGGCGAAGCCGTCCAAGTATCCGCTACCCAAA CACTCCCCGAGGGTATTCCTCCCGTCAAGGACCTCAAGGCAGTCGTCCAG GCCTCGGATGCCACGGGCGTAATCAGTTGCACTGAGGTCGAGATTGAGCT GGCGGTGGGTGAGTATACTCTGGAGCACCTTGGGCGCCTCCCTGCAATTG ATTCGTCATTGGTCACTGACGTGTTGATGAGCGGCACGACGTGGACGCCG CATTTCTCCCCCAGATTTGCTGGCGCGAACCTGAAGCAAGTGCAGGGAAT GATGGGGACGTGGCTGAGGGGGCATCCATTGCACATGACTTTACCGTACA AGGACCAGGTTTTTGGTGTGACAGACAAAGGGGATAATGTGACGATTCCT GAAAGTTTCGACTCGCGAGAGGCGTGGCCGGCGTGTAGCGAGGTTATCGG CAAGGTCAAGGATCAGAGTGCCTGTGGCTCGTGCTGGGCTTTTGCCAGCT CTGCCGCTTTCGAGGACAGGCAGTGCATCGTGCACGGCTCCAAGGACCTC CTTTCCCCCACCGACACCCTCGCCTGCTGCAGTGGCATGGCCTGCGGATT TTCTCAAGGGTGCAGCGGCGGACAACCGGCTGGGGCCTGGGCCTTTTTCG CCTCCCAGGGGGTGGTGTCGGGCGGGCTGTTCGAAGAGGTCGGCTCGGGA GACTCGTGCTTGCCTTACCCTTTCTTGACGTGTGCGCACCACGTGGAACC GACGGAAGAATTGCCTGCGTGCCCCGCGGAAGATTTTGAGACACCCAAAT GCAAGCATAGTTGCTCGGAGGAAGAGTTCGAGAAGGACTATAAGGAGGAC AAGCGGATGGGGACGGCCGGGTATGCCGTGAGGGCCAAGGTAGAGGAGAT CCAGAAGGAAATCATGGAAAATGGGCCGGTGTCGGCGGCATTTACGGTGT ATCAGGACTTTCTGGCCTACTCGGGGGAAGGCGTCTACACCCACGTAACG GGCGCACCGTTGGGGGGCCATGCGGTCAAGTTGATTGGGTGGGGCGTGGA GAACGGGACACCGTACTGGCTCGTCGTCAACTCGTGGAACAAGGCATGGG GTGATGAGGGTCTTTTCCGCATTATCCGGGGACAGGACGAATGCGGATTT GAATCGGATATCACGGCAGGCAGTGTCTAA back to top
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