NO03G03280.1, NO03G03280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03280.1
Unique NameNO03G03280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2155
Alignment locationchr3:976010..979330 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:976010..979330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G03280.1 vs.
Match: EWM29737.1 (cathepsin b [Nannochloropsis gaditana])

HSP 1 Score: 813.1 bits (2099), Expect = 5.200e-232
Identity = 385/482 (79.88%), Postives = 433/482 (89.83%), Query Frame = 0
Query:   84 LAVTVGV-----TAAVDVPFSSCSSSDALGVTKLVVSEWPIHPGHPTTFTVVFNPTKDIVSGTKLSAAVMIKNMQVFEHSVDMCSQTSLTCPLKAGEAVQVSATQTLPEGIPPVKDLKAVVQASDATGVISCTEVEIELAVGEYTLEHLGRLPAIDSSLVTDVLMSGTTWTPHFSPRFAGANLKQVQGMMGTWLRGHPLHMTLPYKDQVFGVTD-KGDNVTIPESFDSREAWPACSEVIGKVKDQSACGSCWAFASSAAFEDRQCIVHGSKDLLSPTDTLACCSGMACGFSQGCSGGQPAGAWAFFASQGVVSGGLFEEVGSGDSCLPYPFLTCAHHVEPTEELPACPAEDFETPKCKHSCSEEEFEKDYKEDKRMGTAGYAVRAKVEEIQKEIMENGPVSAAFTVYQDFLAYSGEGVYTHVTGAPLGGHAVKLIGWGVENGTPYWLVVNSWNKAWGDEGLFRIIRGQDECGFESDITAGSV 560
            L V VG      + AVDVPF++CS++DALGV+K+V+SEWP+HPGHP T +V F+P +DIV GT+L+A V I+NMQVFEHSVDMCS+TSLTCPLKAGE +QVSA+QTLPEGIPPV  LK VVQA+D TGVISC EVE+ELAVGEY+L+HL RL AIDS+LVTD+LM+GTTWTPHFSPRFAGA LKQ QG+MGTWLRGHPLHMTL  K+ V G    KG+N+TIPE+FD+REAWP C+E+IG+VKDQSACGSCWAFASSAAFEDR CI HGSKDLLSPTDTLACC+GMACGFSQGC+GGQPAGAW+FFASQGVVSGGLFEEVG+G +C+PYPFLTCAHHVEPTEELPACPAEDFETP+C+H+CSEE +E+ Y  DKRM   GY+VRA VEEIQKEIME+GPVSAAFTVYQDFL YSGEGVY HVTGAPLGGHAVKLIGWG +NGTPYWLVVNSWNKAWGDEGLFRIIRGQDECGFESDITAGSV
Sbjct:   10 LTVVVGAALFLCSRAVDVPFATCSTTDALGVSKVVMSEWPLHPGHPVTLSVAFSPLQDIVFGTQLTAKVFIQNMQVFEHSVDMCSETSLTCPLKAGEDMQVSASQTLPEGIPPVSGLKVVVQATDDTGVISCIEVELELAVGEYSLDHLSRLSAIDSALVTDILMAGTTWTPHFSPRFAGATLKQAQGLMGTWLRGHPLHMTLKLKEIVMGPAALKGENMTIPEAFDAREAWPECAELIGRVKDQSACGSCWAFASSAAFEDRMCIAHGSKDLLSPTDTLACCTGMACGFSQGCNGGQPAGAWSFFASQGVVSGGLFEEVGTGTTCMPYPFLTCAHHVEPTEELPACPAEDFETPRCRHTCSEELYEETYSADKRMAKRGYSVRANVEEIQKEIMESGPVSAAFTVYQDFLTYSGEGVYQHVTGAPLGGHAVKLIGWGSDNGTPYWLVVNSWNKAWGDEGLFRIIRGQDECGFESDITAGSV 491          
The following BLAST results are available for this feature:
BLAST of NO03G03280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29737.15.200e-23279.88cathepsin b [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03280NO03G03280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03280.1NO03G03280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03280.1.cds1NO03G03280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03280.1.cds2NO03G03280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03280.1.cds3NO03G03280.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03280.1.cds4NO03G03280.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03280.1.cds5NO03G03280.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03280.1.cds6NO03G03280.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03280.1.cds7NO03G03280.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03280.1 ID=NO03G03280.1|Name=NO03G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2155bp
AAATCATCAGGCTACGAGCACATGCCCGCTAAAGCCGTGCACACATGTGT
ACCAGGGAGCCACTGGAAAGAGATCCAGGCTGGGGCCGTGTTGAGCCCTA
GCGGGGCTCTTCAGTGCGGTGGTGCGAGAGAGAGCCGAGACGGCAACCAA
ATTTCAAACGAGTATGCAGACCCCCACTCAAGCACCCACACCACCGGCAT
ACTTACACACAACGCGCATCCACGACGACACGACACAGCGAAAATGCATT
TTTTTGGGCGCAGCCTAGCCCTGGCTGTGACCGTGGGCGTGACAGCCGCC
GTGGACGTCCCCTTTTCGTCTTGCTCCTCAAGCGATGCTCTAGGTGTGAC
CAAATTGGTGGTGTCTGAATGGCCCATCCACCCAGGACATCCTACCACGT
TTACGGTCGTTTTCAACCCGACCAAAGACATCGTGTCCGGGACTAAGCTA
TCCGCCGCTGTCATGATCAAAAACATGCAGGTCTTCGAACACAGCGTGGA
CATGTGCAGCCAAACCAGCCTGACCTGCCCTCTGAAAGCAGGCGAAGCCG
TCCAAGTATCCGCTACCCAAACACTCCCCGAGGGTATTCCTCCCGTCAAG
GACCTCAAGGCAGTCGTCCAGGCCTCGGATGCCACGGGCGTAATCAGTTG
CACTGAGGTCGAGATTGAGCTGGCGGTGGGTGAGTATACTCTGGAGCACC
TTGGGCGCCTCCCTGCAATTGATTCGTCATTGGTCACTGACGTGTTGATG
AGCGGCACGACGTGGACGCCGCATTTCTCCCCCAGATTTGCTGGCGCGAA
CCTGAAGCAAGTGCAGGGAATGATGGGGACGTGGCTGAGGGGGCATCCAT
TGCACATGACTTTACCGTACAAGGACCAGGTTTTTGGTGTGACAGACAAA
GGGGATAATGTGACGATTCCTGAAAGTTTCGACTCGCGAGAGGCGTGGCC
GGCGTGTAGCGAGGTTATCGGCAAGGTCAAGGATCAGAGTGCCTGTGGCT
CGTGCTGGGCTTTTGCCAGCTCTGCCGCTTTCGAGGACAGGCAGTGCATC
GTGCACGGCTCCAAGGACCTCCTTTCCCCCACCGACACCCTCGCCTGCTG
CAGTGGCATGGCCTGCGGATTTTCTCAAGGGTGCAGCGGCGGACAACCGG
CTGGGGCCTGGGCCTTTTTCGCCTCCCAGGGGGTGGTGTCGGGCGGGCTG
TTCGAAGAGGTCGGCTCGGGAGACTCGTGCTTGCCTTACCCTTTCTTGAC
GTGTGCGCACCACGTGGAACCGACGGAAGAATTGCCTGCGTGCCCCGCGG
AAGATTTTGAGACACCCAAATGCAAGCATAGTTGCTCGGAGGAAGAGTTC
GAGAAGGACTATAAGGAGGACAAGCGGATGGGGACGGCCGGGTATGCCGT
GAGGGCCAAGGTAGAGGAGATCCAGAAGGAAATCATGGAAAATGGGCCGG
TGTCGGCGGCATTTACGGTGTATCAGGACTTTCTGGCCTACTCGGGGGAA
GGCGTCTACACCCACGTAACGGGCGCACCGTTGGGGGGCCATGCGGTCAA
GTTGATTGGGTGGGGCGTGGAGAACGGGACACCGTACTGGCTCGTCGTCA
ACTCGTGGAACAAGGCATGGGGTGATGAGGGTCTTTTCCGCATTATCCGG
GGACAGGACGAATGCGGATTTGAATCGGATATCACGGCAGGCAGTGTCTA
ATAAAATCGAATCGGTTTCTTTAAAATCACAAGGAGGGGGGAAAGTGAGT
AATCCAAGTGAGTTTTCCTCCCAACGACCAGCCGAGATTTTGGCTGCTGT
TACGGAGTGCTTGCTTTTGAAAGAGAGATGCTTAGAACGTTGAGAGGGAA
AAGATGAAAAGAGCGAGACACAGCAAGTGTTTCGGTGCCCCTTGAAGAGT
AGACGAAAATATCGAAGAAGGAAATAAAAGAGGGGTGTAGAAGGACAAGG
CATCCTGATTATCAGCATCGTCATAGTCATCATCATAATCATGATCAGCG
ACCCCGCGGGAGCGGCGCAGATTCGGATGTAGGCAGCGAGAGAGTGGAGT
ACATAAGCGACACGCAAAAAGGAGAAAAATGAGGGAATTAAAGGAGGAGA
GAAAAAACATAAAATCGATTCAGGAGACGAGATCAAGACGTTGGTTTCCG
GAGCT
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protein sequence of NO03G03280.1

>NO03G03280.1-protein ID=NO03G03280.1-protein|Name=NO03G03280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=560bp
MPAKAVHTCVPGSHWKEIQAGAVLSPSGALQCGGARESRDGNQISNEYAD
PHSSTHTTGILTHNAHPRRHDTAKMHFFGRSLALAVTVGVTAAVDVPFSS
CSSSDALGVTKLVVSEWPIHPGHPTTFTVVFNPTKDIVSGTKLSAAVMIK
NMQVFEHSVDMCSQTSLTCPLKAGEAVQVSATQTLPEGIPPVKDLKAVVQ
ASDATGVISCTEVEIELAVGEYTLEHLGRLPAIDSSLVTDVLMSGTTWTP
HFSPRFAGANLKQVQGMMGTWLRGHPLHMTLPYKDQVFGVTDKGDNVTIP
ESFDSREAWPACSEVIGKVKDQSACGSCWAFASSAAFEDRQCIVHGSKDL
LSPTDTLACCSGMACGFSQGCSGGQPAGAWAFFASQGVVSGGLFEEVGSG
DSCLPYPFLTCAHHVEPTEELPACPAEDFETPKCKHSCSEEEFEKDYKED
KRMGTAGYAVRAKVEEIQKEIMENGPVSAAFTVYQDFLAYSGEGVYTHVT
GAPLGGHAVKLIGWGVENGTPYWLVVNSWNKAWGDEGLFRIIRGQDECGF
ESDITAGSV*
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mRNA from alignment at chr3:976010..979330-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03280.1 ID=NO03G03280.1|Name=NO03G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=3321bp|location=Sequence derived from alignment at chr3:976010..979330- (Nannochloropsis oceanica)
AAATCATCAGGCTACGAGCACATGCCCGCTAAAGCCGTGCACACATGTGT ACCAGGGAGCCACTGGAAAGAGATCCAGGCTGGGGCCGTGTTGAGCCCTA GCGGGGCTCTTCAGTGCGGTGGTGCGAGAGAGAGCCGAGACGGCAACCAA ATTTCAAACGAGTATGCAGACCCCCACTCAAGCACCCACACCACCGGCAT ACTTACACACAACGCGCATCCACGACGACACGACACAGCGAAAATGCATT TTTTTGGGCGCAGCCTAGCCCTGGCTGTGACCGTGGGCGTGACAGCCGCC GTGGACGTCCCCTTTTCGTCTTGCTCCTCAAGCGATGCTCTAGGTGAGTT GCGTACTGATCGTTCTTTGTTTGTCCGTGAGTGTGTGTGGGTGCTCGCCT GGACTGAGTGTAATAATTATGTGCCCATTTGAAGCATGTGTCTTGTCTTT GGCCCCTTGGTTTATCTCAATGGCGTGTTGAGCCCGGAAATTCCTGCCTT CCCTGTTGTCGCTGTGTTCCTCGCCGGGCCAGGGGCTCATTGGTTTATGC TCATAGCCAAGATATTCATTATAATCTTGGTGACAGATGTAATCTATTTT GATGTGTTAGTTTGTGTTCTACTTCCCTTTCGTATTGTTCCAGCATTTTT CACACGCCGCTCACCATTTACACACCAAATTTTCAATACAACCCCTTCCC CCACCCTCAAAAAGGTGTGACCAAATTGGTGGTGTCTGAATGGCCCATCC ACCCAGGACATCCTACCACGTTTACGGTCGTTTTCAACCCGACCAAAGAC ATCGTGTCCGGGACTAAGCTATCCGCCGCTGTCATGATCAAAAACATGCA GGTATGAGTGTATACGTGTATTTGTGTGCGTCTGCATCCCTCTCTGTCTC TCTCTGTCTCTCTCTGTGTCTATATATATGCATAGTAAGGTAAAATGTAA GTAAGGTAAGGTGGTTCGAATTCGCTTGCGCGTTGGTGTCGTAAGCAGCT GCAACAGCAGCCGCAACACCAGCAGCCGCAACACTAAAATTTACTCAAAT CAATTCATGGTCCTCCCACGCTACAACACAGGTCTTCGAACACAGCGTGG ACATGTGCAGCCAAACCAGCCTGACCTGCCCTCTGAAAGCAGGCGAAGCC GTCCAAGTATCCGCTACCCAAACACTCCCCGAGGGTATTCCTCCCGTCAA GGACCTCAAGGCAGTCGTCCAGGCCTCGGATGCCACGGGCGTAATCAGTT GCACTGAGGTCGAGATTGAGCTGGCGGTGGGTGAGTATACTCTGGAGCAC CTTGGGCGCCTCCCTGCAATTGATTCGTCATTGGTCACTGACGTGTTGAT GAGCGGCACGACGTGGACGCCGCATTTCTCCCCCAGATTTGCTGGCGCGA ACCTGAAGCAAGTGCAGGGAATGATGGGGACGTGGCTGAGGGGGCATCCA TTGCACATGACTTTACCGTACAAGGACCAGGTTTTTGGTGTGACAGACAA AGGGGATAATGTGACGATTCCTGAAAGTTTCGACTCGCGAGAGGCGTGGC CGGCGTGTAGCGAGGTTATCGGCAAGGTATGGATGTAGGCAAGGGCACCG CGGCGTACGATCTGTCATGTGAAGATGAATGTCACCTCTCCTCTCCTCCC TCCTTCCTTCTTTCCGTAGGTCAAGGATCAGAGTGCCTGTGGCTCGTGCT GGGCTTTTGCCAGCTCTGCCGCTTTCGAGGACAGGCAGTGCATCGGTACG TCTCTATTCTATTCCCCCCCCCCCTTCCTCTCCAACTTTCTACTCACCCT CCCTCCTTTCCTCCCTCTCTCCCTCCTTTTCTTGGCGTAGTGCACGGCTC CAAGGACCTCCTTTCCCCCACCGACACCCTCGCCTGCTGCAGTGGCATGG CCTGCGGATTTTCTCAAGGGTGCAGCGGCGGACAACCGGCTGGGGCCTGG GCCTTTTTCGCCTCCCAGGGGGTGGTGTCGGGCGGGCTGTTCGAAGAGGT CGGCTCGGGAGACTCGTGCTTGCCTTACCCTTTCTTGACGTGTGCGCACC ACGTGGAACCGACGGAAGAATTGCCTGCGTGCCCCGCGGAAGATTTTGAG ACACCCAAATGCAAGCATAGTTGCTCGGAGGAAGAGTTCGAGAAGGACTA TAAGGAGGACAAGCGGATGGGGACGGCCGGGTATGCCGTGAGGGCCAAGG TAGAGGAGATCCAGAAGGAAATCATGGAAAATGGGCCGGTGTCGGCGGCA TTTACGGTGTATCAGGACTTTCTGGCCTACTCGGGGGAAGGCGTCTACAC CCACGTAACGGGCGCACCGTTGGGGGGCCATGCGGTCAAGTAAGCGAGGG GAAGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGATAGACTTCCGGACCTCATTCTATTCCC TTTCGTTTTTCAAGTCATTCACTTAGTTTCATATTCCAAAAAAAAACTCT TTCTGCGCAGGTTGATTGGGTGGGGCGTGGAGAACGGGACACCGTACTGG CTCGTCGTCAACTCGTGGAACAAGGTACGATGGGAGAGATAGGGAGGGAT GGAGGGATGGAGGGAGGGAGGGGGGGAGGGAAGGTTGTCTTTTCGTCATT TTTTGCGTTTGTTGTTTTCTTGGCGATTTTTTGTCCGGGTGACATTTTTG TCGAATTCGCGTGTCGCTTACAGAAGGCCACTCATGCCGACTCAAACGTG GAAACATGCATACACCATGTACATTCCCAGGCATGGGGTGATGAGGGTCT TTTCCGCATTATCCGGGGACAGGACGAATGCGGATTTGAATCGGATATCA CGGCAGGCAGTGTCTAATAAAATCGAATCGGTTTCTTTAAAATCACAAGG AGGGGGGAAAGTGAGTAATCCAAGTGAGTTTTCCTCCCAACGACCAGCCG AGATTTTGGCTGCTGTTACGGAGTGCTTGCTTTTGAAAGAGAGATGCTTA GAACGTTGAGAGGGAAAAGATGAAAAGAGCGAGACACAGCAAGTGTTTCG GTGCCCCTTGAAGAGTAGACGAAAATATCGAAGAAGGAAATAAAAGAGGG GTGTAGAAGGACAAGGCATCCTGATTATCAGCATCGTCATAGTCATCATC ATAATCATGATCAGCGACCCCGCGGGAGCGGCGCAGATTCGGATGTAGGC AGCGAGAGAGTGGAGTACATAAGCGACACGCAAAAAGGAGAAAAATGAGG GAATTAAAGGAGGAGAGAAAAAACATAAAATCGATTCAGGAGACGAGATC AAGACGTTGGTTTCCGGAGCT
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Coding sequence (CDS) from alignment at chr3:976010..979330-

>NO03G03280.1 ID=NO03G03280.1|Name=NO03G03280.1|organism=Nannochloropsis oceanica|type=CDS|length=1680bp|location=Sequence derived from alignment at chr3:976010..979330- (Nannochloropsis oceanica)
ATGCCCGCTAAAGCCGTGCACACATGTGTACCAGGGAGCCACTGGAAAGA
GATCCAGGCTGGGGCCGTGTTGAGCCCTAGCGGGGCTCTTCAGTGCGGTG
GTGCGAGAGAGAGCCGAGACGGCAACCAAATTTCAAACGAGTATGCAGAC
CCCCACTCAAGCACCCACACCACCGGCATACTTACACACAACGCGCATCC
ACGACGACACGACACAGCGAAAATGCATTTTTTTGGGCGCAGCCTAGCCC
TGGCTGTGACCGTGGGCGTGACAGCCGCCGTGGACGTCCCCTTTTCGTCT
TGCTCCTCAAGCGATGCTCTAGGTGTGACCAAATTGGTGGTGTCTGAATG
GCCCATCCACCCAGGACATCCTACCACGTTTACGGTCGTTTTCAACCCGA
CCAAAGACATCGTGTCCGGGACTAAGCTATCCGCCGCTGTCATGATCAAA
AACATGCAGGTCTTCGAACACAGCGTGGACATGTGCAGCCAAACCAGCCT
GACCTGCCCTCTGAAAGCAGGCGAAGCCGTCCAAGTATCCGCTACCCAAA
CACTCCCCGAGGGTATTCCTCCCGTCAAGGACCTCAAGGCAGTCGTCCAG
GCCTCGGATGCCACGGGCGTAATCAGTTGCACTGAGGTCGAGATTGAGCT
GGCGGTGGGTGAGTATACTCTGGAGCACCTTGGGCGCCTCCCTGCAATTG
ATTCGTCATTGGTCACTGACGTGTTGATGAGCGGCACGACGTGGACGCCG
CATTTCTCCCCCAGATTTGCTGGCGCGAACCTGAAGCAAGTGCAGGGAAT
GATGGGGACGTGGCTGAGGGGGCATCCATTGCACATGACTTTACCGTACA
AGGACCAGGTTTTTGGTGTGACAGACAAAGGGGATAATGTGACGATTCCT
GAAAGTTTCGACTCGCGAGAGGCGTGGCCGGCGTGTAGCGAGGTTATCGG
CAAGGTCAAGGATCAGAGTGCCTGTGGCTCGTGCTGGGCTTTTGCCAGCT
CTGCCGCTTTCGAGGACAGGCAGTGCATCGTGCACGGCTCCAAGGACCTC
CTTTCCCCCACCGACACCCTCGCCTGCTGCAGTGGCATGGCCTGCGGATT
TTCTCAAGGGTGCAGCGGCGGACAACCGGCTGGGGCCTGGGCCTTTTTCG
CCTCCCAGGGGGTGGTGTCGGGCGGGCTGTTCGAAGAGGTCGGCTCGGGA
GACTCGTGCTTGCCTTACCCTTTCTTGACGTGTGCGCACCACGTGGAACC
GACGGAAGAATTGCCTGCGTGCCCCGCGGAAGATTTTGAGACACCCAAAT
GCAAGCATAGTTGCTCGGAGGAAGAGTTCGAGAAGGACTATAAGGAGGAC
AAGCGGATGGGGACGGCCGGGTATGCCGTGAGGGCCAAGGTAGAGGAGAT
CCAGAAGGAAATCATGGAAAATGGGCCGGTGTCGGCGGCATTTACGGTGT
ATCAGGACTTTCTGGCCTACTCGGGGGAAGGCGTCTACACCCACGTAACG
GGCGCACCGTTGGGGGGCCATGCGGTCAAGTTGATTGGGTGGGGCGTGGA
GAACGGGACACCGTACTGGCTCGTCGTCAACTCGTGGAACAAGGCATGGG
GTGATGAGGGTCTTTTCCGCATTATCCGGGGACAGGACGAATGCGGATTT
GAATCGGATATCACGGCAGGCAGTGTCTAA
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Synonyms
Publications