NO03G03120.1, NO03G03120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03120.1
Unique NameNO03G03120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1542
Alignment locationchr3:932418..934403 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:932418..934403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03120.1 vs.
Match: EWM29781.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 399.1 bits (1024), Expect = 1.600e-107
Identity = 208/262 (79.39%), Postives = 228/262 (87.02%), Query Frame = 0 
Query:    1 MEEAGEEEEGVLYVHCNRCQQSLSSFYKSSCGHCFCVDCATTHFAKDPCCPVCGLRLSQKHFRGPFDVGISAGEPVEAAMYKNVFTSNRLDEVLQKALLCLPAVEDVINLVTTQLYLENQRSQILREKVERKLRKARGDLKLTVQEARSKIAILSSQLTEAEAWKRKLNDELSTAKQEVYEVHRKNKSMEQMLARLRNDGHAIPAALPLPSPASTPPHQYQHLRQQPQRSQQQQQQYYPPPSPRISASSSKSPSGLQFPQQQ 263
            ME+  EEEEGVLYVHCNRCQQ LSSFYKSSCGHCFCV+CAT HFAKDPCCPVCGLRLSQKHFRGPFDVGIS  EP+E  M+KNVF+SNRLDEVLQ+AL  LPAVEDVI+LVTTQLYLENQRSQ  RE+VERK RK RGDLKLTVQEARSKIA+LSSQL EAEAWKRKLNDEL+TAKQE +E HRKNKSMEQ+LARLRNDGHAIP+A  L SPASTPPH  QH  +  Q   + QQ +YPPPSPR+++SSSKS +GLQFP  Q
Sbjct:    1 MEDTCEEEEGVLYVHCNRCQQVLSSFYKSSCGHCFCVECATAHFAKDPCCPVCGLRLSQKHFRGPFDVGISIAEPIETIMFKNVFSSNRLDEVLQRALQSLPAVEDVISLVTTQLYLENQRSQFQRERVERKWRKVRGDLKLTVQEARSKIALLSSQLAEAEAWKRKLNDELATAKQEAHEFHRKNKSMEQILARLRNDGHAIPSA--LSSPASTPPHHNQH--RLAQAHHRPQQSFYPPPSPRLNSSSSKSVNGLQFPSNQ 258
The following BLAST results are available for this feature:
BLAST of NO03G03120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29781.11.600e-10779.39conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03120NO03G03120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03120.1NO03G03120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03120.1.cds1NO03G03120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03120.1.cds2NO03G03120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03120.1.cds3NO03G03120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03120.1.cds4NO03G03120.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03120.1 ID=NO03G03120.1|Name=NO03G03120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp
ACAGGCAAGCAGCCCTCAACAGTCCATCCCCCCCTTGCCACTTCATCAGC
CATGGAAGAAGCCGGCGAGGAGGAAGAGGGCGTACTATACGTCCACTGCA
ATCGGTGCCAGCAGAGCCTCTCCTCCTTCTACAAATCCTCTTGTGGGCAC
TGCTTTTGCGTGGACTGTGCCACCACTCATTTCGCTAAAGACCCCTGCTG
CCCCGTCTGTGGCCTTCGCCTCTCCCAAAAGCACTTCCGGGGACCCTTCG
ACGTAGGCATCTCTGCAGGCGAGCCCGTGGAAGCGGCCATGTACAAGAAC
GTCTTCACTTCCAATCGATTGGATGAGGTTCTGCAAAAGGCCTTATTGTG
CTTACCAGCGGTCGAAGACGTCATCAACCTCGTTACCACCCAGTTGTACC
TGGAGAATCAACGCAGTCAGATCCTGCGGGAGAAGGTGGAGCGGAAGCTC
AGGAAGGCACGGGGGGATCTGAAGCTCACGGTGCAGGAGGCCAGGAGTAA
GATTGCCATCCTTTCCTCCCAGCTTACAGAGGCAGAGGCTTGGAAACGCA
AACTTAATGACGAGCTATCCACGGCCAAGCAGGAGGTGTATGAGGTCCAC
CGCAAGAATAAGTCCATGGAGCAGATGCTTGCACGTCTTCGCAACGACGG
CCACGCCATCCCTGCCGCCCTTCCACTCCCCAGCCCGGCCTCGACACCTC
CCCATCAATACCAACACCTCCGCCAGCAACCGCAGCGATCGCAGCAGCAG
CAGCAGCAGTACTACCCCCCTCCTTCCCCACGTATCAGCGCCAGCAGCAG
CAAGTCCCCCAGTGGGCTCCAATTCCCGCAGCAGCAGCTGCTGCATCGTC
CCGCCTCCGCCGCCCGCACTATCTCCCCTCACCACCCAGGAGAAGGAGGC
GGAGGAGGAGGAGATGGAGGGAGGGGGTTCCAAAATTCTTTGGTTCAGCC
TACCCCATCTCGGAGTATGAGTGCTGGCAGCAGCAACGGCAGCATTTCAT
TGTCTCGCTCTCTGTCGCCGCATCATTATCATCATCATCGTGGGGGGGGC
TTGGCCGTCGGTGTAGGGGTGGGGGGGACGGGCGCTTGTTCACCCGCCGG
GGGTCGTTCCTCCCACGCGTCCTCCTCCTCGCCTTTTGGAGGGAGATCTT
TTGGCGCGGTAAGTGATTACAGAGTGCCTTATTGAGGGAGGGAGAGACGG
AGGGAGGAAGGGGAAAAGAGAAGGAGGGAGGAATGCTTTCTTTTCTTGCT
CCTCTCTGTAGGTACTCCTCTTTGTAGAAGGTCTTCTTCCGTACTGGAGG
GGAAGAAATGGAGAGAGGGGGGGGGAAGGACGAGAGGGGGGGAGGGAGGG
CGAGATGTACCCTCGTAAGGCTGAGATTTACAACTACAACTACAGAAGCA
ACAACACCGCGACCAACAGACTGACAGATCTGGCAGCAGCAGCAGCAGCC
ACAAAAATTAGAGAAATTAAAGTCGAAGAAATATAGTGCCTGCTTTCCTT
GTTGTTGGGTGGGTGGGTGGGTGGGAGAGAGAGAAAGAGAGA
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protein sequence of NO03G03120.1

>NO03G03120.1-protein ID=NO03G03120.1-protein|Name=NO03G03120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MEEAGEEEEGVLYVHCNRCQQSLSSFYKSSCGHCFCVDCATTHFAKDPCC
PVCGLRLSQKHFRGPFDVGISAGEPVEAAMYKNVFTSNRLDEVLQKALLC
LPAVEDVINLVTTQLYLENQRSQILREKVERKLRKARGDLKLTVQEARSK
IAILSSQLTEAEAWKRKLNDELSTAKQEVYEVHRKNKSMEQMLARLRNDG
HAIPAALPLPSPASTPPHQYQHLRQQPQRSQQQQQQYYPPPSPRISASSS
KSPSGLQFPQQQLLHRPASAARTISPHHPGEGGGGGGDGGRGFQNSLVQP
TPSRSMSAGSSNGSISLSRSLSPHHYHHHRGGGLAVGVGVGGTGACSPAG
GRSSHASSSSPFGGRSFGAVSDYRVPY*
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mRNA from alignment at chr3:932418..934403+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03120.1 ID=NO03G03120.1|Name=NO03G03120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1986bp|location=Sequence derived from alignment at chr3:932418..934403+ (Nannochloropsis oceanica)
ACAGGCAAGCAGCCCTCAACAGTCCATCCCCCCCTTGCCACTTCATCAGC
CATGGAAGAAGCCGGCGAGGAGGAAGAGGGCGTACTATACGTCCACTGCA
ATCGGTGCCAGCAGAGCCTCTCCTCCTTCTACAAATCCTCTTGTGGGCAC
TGCTTTTGCGTGGACTGTGCCACCACTCATTTCGCTAAAGACCCCTGCTG
CCCCGTCTGTGGCCTTCGCCTCTCCCAAAAGCACTTCCGGGGACCCTTCG
ACGTAGGCATCTCTGCAGGCGAGCCCGTGGAAGCGGCCATGTACAAGAAC
GTCTTCACTTCCAATCGATTGGATGAGGTTCTGCAAAAGGCCTTATTGTG
CTTACCAGCGGTCGAAGACGTCATCAACCTCGTTACCACCCAGTTGTACC
TGGAGAATCAACGCAGTCAGATCCTGCGGGAGAAGGTGGAGCGGAAGCTC
AGGAAGGCACGGGGGGATCTGAAGCTCACGGTGCAGGAGGCCAGGAGTAA
GATTGCCATCCTTTCCTCCCAGCTTACAGAGGCAGAGGCTTGGAAACGCA
AACTTAGTACGTAGAGGGAGGGGGGAAGGGATGGTGAGGAGCGAGGGAAG
GCGATATTTGTGTGTATGAGGAAGACGTAGGAAAGGTTCTTCATAACGAG
TTTTCATTCATCCCTCTCTTCCTCCCTCCCCTCCTTCCTTCTTTCCTCGG
CATAGATGACGAGCTATCCACGGCCAAGCAGGAGGTGTATGAGGTCCACC
GCAAGAATAAGTCCATGGAGCAGGTAAGGGGGCGAGAAATTGGGAGAGAG
AGACAAAGTTAAATCCCATGGGTGTCCTCATCTATGCTCCTCCTCGCTTG
GCACCGCAATCTCCTCCTCCTTCTCCTCCTCCTCCTTCTACTCCTTTTTC
CTTCTTTGCCTCATCTCCTCCCTCCCCCCTCTCCTTCCCCCTTGCCTTGC
CCAGATGCTTGCACGTCTTCGCAACGACGGCCACGCCATCCCTGCCGCCC
TTCCACTCCCCAGCCCGGCCTCGACACCTCCCCATCAATACCAACACCTC
CGCCAGCAACCGCAGCGATCGCAGCAGCAGCAGCAGCAGTACTACCCCCC
TCCTTCCCCACGTATCAGCGCCAGCAGCAGCAAGGTAAGTGGGGAAATGC
ACAGAGCAAATGTCATTCACTCCTCCCTCCTTCCCGCCACTTCTTCTCAA
TTCGCCCCTCCCTCCCTCCTTTCCTACCTACCTACATCCTCACCTCAGTC
CCCCAGTGGGCTCCAATTCCCGCAGCAGCAGCTGCTGCATCGTCCCGCCT
CCGCCGCCCGCACTATCTCCCCTCACCACCCAGGAGAAGGAGGCGGAGGA
GGAGGAGATGGAGGGAGGGGGTTCCAAAATTCTTTGGTTCAGCCTACCCC
ATCTCGGAGTATGAGTGCTGGCAGCAGCAACGGCAGCATTTCATTGTCTC
GCTCTCTGTCGCCGCATCATTATCATCATCATCGTGGGGGGGGCTTGGCC
GTCGGTGTAGGGGTGGGGGGGACGGGCGCTTGTTCACCCGCCGGGGGTCG
TTCCTCCCACGCGTCCTCCTCCTCGCCTTTTGGAGGGAGATCTTTTGGCG
CGGTAAGTGATTACAGAGTGCCTTATTGAGGGAGGGAGAGACGGAGGGAG
GAAGGGGAAAAGAGAAGGAGGGAGGAATGCTTTCTTTTCTTGCTCCTCTC
TGTAGGTACTCCTCTTTGTAGAAGGTCTTCTTCCGTACTGGAGGGGAAGA
AATGGAGAGAGGGGGGGGGAAGGACGAGAGGGGGGGAGGGAGGGCGAGAT
GTACCCTCGTAAGGCTGAGATTTACAACTACAACTACAGAAGCAACAACA
CCGCGACCAACAGACTGACAGATCTGGCAGCAGCAGCAGCAGCCACAAAA
ATTAGAGAAATTAAAGTCGAAGAAATATAGTGCCTGCTTTCCTTGTTGTT
GGGTGGGTGGGTGGGTGGGAGAGAGAGAAAGAGAGA
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Coding sequence (CDS) from alignment at chr3:932418..934403+

>NO03G03120.1 ID=NO03G03120.1|Name=NO03G03120.1|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at chr3:932418..934403+ (Nannochloropsis oceanica)
ATGGAAGAAGCCGGCGAGGAGGAAGAGGGCGTACTATACGTCCACTGCAA
TCGGTGCCAGCAGAGCCTCTCCTCCTTCTACAAATCCTCTTGTGGGCACT
GCTTTTGCGTGGACTGTGCCACCACTCATTTCGCTAAAGACCCCTGCTGC
CCCGTCTGTGGCCTTCGCCTCTCCCAAAAGCACTTCCGGGGACCCTTCGA
CGTAGGCATCTCTGCAGGCGAGCCCGTGGAAGCGGCCATGTACAAGAACG
TCTTCACTTCCAATCGATTGGATGAGGTTCTGCAAAAGGCCTTATTGTGC
TTACCAGCGGTCGAAGACGTCATCAACCTCGTTACCACCCAGTTGTACCT
GGAGAATCAACGCAGTCAGATCCTGCGGGAGAAGGTGGAGCGGAAGCTCA
GGAAGGCACGGGGGGATCTGAAGCTCACGGTGCAGGAGGCCAGGAGTAAG
ATTGCCATCCTTTCCTCCCAGCTTACAGAGGCAGAGGCTTGGAAACGCAA
ACTTAATGACGAGCTATCCACGGCCAAGCAGGAGGTGTATGAGGTCCACC
GCAAGAATAAGTCCATGGAGCAGATGCTTGCACGTCTTCGCAACGACGGC
CACGCCATCCCTGCCGCCCTTCCACTCCCCAGCCCGGCCTCGACACCTCC
CCATCAATACCAACACCTCCGCCAGCAACCGCAGCGATCGCAGCAGCAGC
AGCAGCAGTACTACCCCCCTCCTTCCCCACGTATCAGCGCCAGCAGCAGC
AAGTCCCCCAGTGGGCTCCAATTCCCGCAGCAGCAGCTGCTGCATCGTCC
CGCCTCCGCCGCCCGCACTATCTCCCCTCACCACCCAGGAGAAGGAGGCG
GAGGAGGAGGAGATGGAGGGAGGGGGTTCCAAAATTCTTTGGTTCAGCCT
ACCCCATCTCGGAGTATGAGTGCTGGCAGCAGCAACGGCAGCATTTCATT
GTCTCGCTCTCTGTCGCCGCATCATTATCATCATCATCGTGGGGGGGGCT
TGGCCGTCGGTGTAGGGGTGGGGGGGACGGGCGCTTGTTCACCCGCCGGG
GGTCGTTCCTCCCACGCGTCCTCCTCCTCGCCTTTTGGAGGGAGATCTTT
TGGCGCGGTAAGTGATTACAGAGTGCCTTATTGA
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Synonyms
Publications