NO03G02840.4, NO03G02840.4 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G02840.4
Unique Name	NO03G02840.4
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3949
Alignment location	chr3:852636..857942 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:852636..857942 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO03G02840.4 vs.
Match: EWM29754.1 (elongation factor ef-2 [Nannochloropsis gaditana])

HSP 1 Score: 1195.6 bits (3092), Expect = 0.000e+0
Identity = 646/1036 (62.36%), Postives = 776/1036 (74.90%), Query Frame = 0

Query:    1 MARRVSADELVACQGRQHNIRNVCILAHVDHGKTTLSDSLVSSNGIISAKLAGKLRFLDSTEEEQQRGITMKSSAISLLHTKEIRQRPGSTPPTVADPAPQESPVAASPPPPPLASTPMAAQRAAPSMPSSVSLPPSSSQDFLINLIDSPGHIDFSSDVSTATRLSDGAIVVVDVLEGVCTQTHAVLRQAWSEGMKPCLVLNKLDRLILEVRLTPLEAYWHLQRVLEQVNAISSSLITSETFKLDETETFTDNWEKEWLFAPERGNVVFASSLYCWAFSILTFARIWMRKLGLKPGQLVRHLWGDFVLNVKTLAVSRYTPESKAKPMFVAMILDPIWQIYEATVLGKDLQKVGKMVKRLDLEVPARELNPKDLRGTASAIFRRWLPLAQAVLDMVVDTVPDPVQAQYRRIGALWPPIQMPDAAFSDEEKSGRDERETDAARGKAMERVRKCVAQCSVLDDAPVVAFVSKVVPVRAVELGEWCVSSAYSGGDRDGDVFVAFARVFSGILRPDSDLFVLGPKYHPQRKTTRSHVRALSGEGTLGLFMMMGTSMLPVPFVPAGNLVAIAGLEGLVVKSATLSSTLACPALRAMTLQAKPIVRVAVEVVRQGDLEALERGLAKLYQADPAVEISVQENGEHVITALGELHLEQCLKDLRDRYSRVEIQASMPLVAFRESVAFERMAPEQIDCPPQLSLPPWSEEEGVATSSGGVCKIITSSGDCRLTIRCLAMPAPLAQLIDTEPFEMRKVVLRMRHGKVAQESTVDDDDDDDVP----AAMRRMSVVNKECGDFVDDRRIFRQKLE-DCLRQE---REGKRNDETHEPIEVNERWTGLS---AEMDAILAFGPRNVGPNMLWKAPDFVFSVLWAAGGGSE-ETESDVGLVDAGKLNEWKKSFAWPTLENSILVGFQMATASGPLAEEQMYGVAFVVEEVALLLKREEFCAAEEVGKDKAPKGERKQEGQEREQGQDQGGKFAIPPLTCEDLNIWLTARLGSITGQVMSSCKSACRAAFLSSPVRLVEALFECDLQCDRV 1025
            MARRVSADEL+A QG+Q  IRNVCILAHVDHGKTTLSDSLV SNGIIS KLAGKLRFLDS+EEEQ+RGITMK+SAISLLHTK+ R+ P     T    AP+ESP A +            +Q        S  LP   SQD+LINLIDSPGHIDFSSDVSTATRLSDGAI++VD+LEGVCTQTHAVLRQAW E MKPCLVLNK+DRLILEVRLTPLEAYWHLQRVLEQ+NAISSSLITSETFKL+E E + D+WEKEWLF+PERGNVVFASSLYCWAFS+  FARIW +KL LKP  L RHLWG+FV N + L++SRYTPE+K+KPMFVAM+LDPIWQ+YEA VL ++LQKV +M+K+LDLE+PARE+NPKDLRGTAS+IFRRWLPLA+ VLDMVV+ VP+PV AQ RRI ALWP + + ++   +    G  +   D +  K +  VR  VA CSV ++APVV FVSKV+P+R  +LG WC SS  S  DRD D+FVAFARVFSG+L+PDS L++LGPKYHPQ++ T SHV+ L  EG LGLFMMMGTS+LPVP VPAGNL AIAGLEGLV+KSATLSSTLACPALR +TLQAKPIVRVAVEVV Q DLEALE+GLAKL+Q DPAVEIS+Q++GEHVITALGELHLEQCLKDLR+R++RV+I+AS PL+AFRESVA E    ++ D PPQL L PWSEEEG+  ++ GVCK+ TSSGDCRLT+RC+A+P  LA+L+ T      K+   +R  K  +E+   D    +V     A + R   + +    ++D+   F Q+ +   L +E   REG  N E HE     +    L+   A    ILAFGPRNVGPN+LW+ P+F   + WA  G  E E ES+  + D   + EWK   AWP+L++S+LVGFQMAT+SGPLAEEQMYGV F +E++  LL   +F              E  ++G E         +  +P L+ EDL  WL++RLGS+TGQVM+ CK+ACRAAFLSSPVRLVEA FECDLQCDR+
Sbjct:    1 MARRVSADELIALQGKQQFIRNVCILAHVDHGKTTLSDSLVCSNGIISPKLAGKLRFLDSSEEEQKRGITMKASAISLLHTKKTRRFPIVDLSTPVTNAPRESPGAIA-----------VSQGGTDVGSLSAELPYPVSQDYLINLIDSPGHIDFSSDVSTATRLSDGAIIIVDILEGVCTQTHAVLRQAWEEKMKPCLVLNKMDRLILEVRLTPLEAYWHLQRVLEQLNAISSSLITSETFKLNEDEKYADSWEKEWLFSPERGNVVFASSLYCWAFSVPKFARIWAQKLKLKPAFLSRHLWGNFVFNAQNLSISRYTPENKSKPMFVAMVLDPIWQLYEAAVLEENLQKVCRMIKKLDLEIPAREINPKDLRGTASSIFRRWLPLAKTVLDMVVEVVPNPVVAQQRRIEALWPRLPLQESTCVEHAPDGEVQSGQDGS-DKCVAEVRGSVASCSVRENAPVVVFVSKVIPMRKTDLGAWCTSSESSEHDRDRDIFVAFARVFSGVLQPDSRLYILGPKYHPQKRDTISHVQGLKTEGCLGLFMMMGTSLLPVPSVPAGNLAAIAGLEGLVIKSATLSSTLACPALRTVTLQAKPIVRVAVEVVHQADLEALEKGLAKLFQTDPAVEISIQQSGEHVITALGELHLEQCLKDLRERFARVQIRASAPLIAFRESVALETAPGDETDRPPQLLLAPWSEEEGIIDAAEGVCKLTTSSGDCRLTVRCVALPDRLARLLITRK-PCIKLWKLLRAIKQQEETAGLDASVTEVTIEGLADIPREPDIQQRGEGWLDENTYFGQRHQLGTLTEEDLLREGLLNVE-HEIDSGEDSMQDLAAFRAGCTDILAFGPRNVGPNLLWRTPNFSIQISWAGKGVQEIEVESEFYVEDETNIREWKMKRAWPSLQSSLLVGFQMATSSGPLAEEQMYGVGFAIEKLEFLLSPSDF-------------KETLRDGNEE--------RSCLPRLSREDLEAWLSSRLGSLTGQVMTLCKTACRAAFLSSPVRLVEAFFECDLQCDRL 1001

The following BLAST results are available for this feature:

BLAST of NO03G02840.4 vs.

BLAST of NO03G02840.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29754.1	0.000e+0	62.36	elongation factor ef-2 [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G02840	NO03G02840	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G02840.4	NO03G02840.4-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G02840.4.cds1	NO03G02840.4.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G02840.4.cds2	NO03G02840.4.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G02840.4.cds3	NO03G02840.4.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G02840.4.cds4	NO03G02840.4.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G02840.4.cds5	NO03G02840.4.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G02840.4.cds6	NO03G02840.4.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G02840.4.cds7	NO03G02840.4.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G02840.4.cds8	NO03G02840.4.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G02840.4.cds9	NO03G02840.4.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G02840.4.cds10	NO03G02840.4.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G02840.4.cds11	NO03G02840.4.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G02840.4.cds12	NO03G02840.4.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G02840.4.cds13	NO03G02840.4.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G02840.4.cds14	NO03G02840.4.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:852636..857942+
coding sequence from alignment at chr3:852636..857942+

mRNA sequence

>NO03G02840.4 ID=NO03G02840.4|Name=NO03G02840.4|organism=Nannochloropsis oceanica|type=mRNA|length=3949bp
ACAGGCGGGCTTCATTCCAGATAGACAAACTCCACTAGAAGGAAACCCGC
TCGCAATCAACCTCCCCACGCGTCGCATCATACAATGAGACTGGAGCTCA
CATCTTTGCTTTGGTGAATCTGAGGCACACACAGGAAGCGCGCAAAGTAA
GTGAGGTTGCGGAAGAGTAGCTTCTAGGAAAGGCCACGTATAGGCAGCAT
GACAAATTGTCAGACTATGTGCTTCGGCGGCATCCTGTCAAATCTCTCTG
CCTCCCTCCCAGTCTTCCTTCCGGTTGTGCAGGCAGCAAGTACCCCCCAT
GGCACGCCGGGTCAGCGCCGACGAGCTGGTGGCATGTCAGGGACGGCAAC
ATAATATCCGAAACGTGTGCATTTTGGCGCATGTAGACCACGGAAAGACC
ACTCTTTCGGACAGTTTGGTTAGTTCGAATGGTATTATCTCTGCGAAGCT
TGCCGGGAAATTGCGCTTCCTCGATTCGACTGAAGAAGAGCAGCAACGTG
GAATCACCATGAAATCAAGTGCTATCTCGCTACTACATACCAAAGAGATA
CGTCAACGTCCAGGCTCTACGCCGCCGACGGTGGCGGACCCGGCGCCACA
AGAGAGTCCAGTGGCAGCATCACCACCACCACCACCACTCGCGTCAACAC
CAATGGCAGCGCAGAGAGCCGCCCCAAGCATGCCCTCCTCCGTCAGCCTC
CCGCCTTCGTCGTCACAGGACTTTCTCATCAATTTGATCGACTCACCGGG
CCACATCGACTTTTCTAGTGATGTGTCGACAGCAACTCGCTTGTCTGATG
GGGCGATTGTGGTCGTGGACGTGTTGGAGGGAGTCTGTACGCAGACTCAT
GCGGTGCTGCGTCAGGCATGGAGCGAGGGAATGAAGCCTTGTCTGGTTTT
AAACAAGCTCGATAGACTTATCCTAGAGGTTCGCTTGACCCCCCTGGAGG
CATACTGGCATCTGCAACGCGTGCTTGAGCAGGTGAACGCCATCAGCTCC
TCTCTAATCACCAGCGAGACCTTCAAGCTTGATGAGACGGAGACCTTCAC
TGACAACTGGGAAAAGGAGTGGCTATTTGCACCAGAGCGGGGTAATGTGG
TCTTTGCCAGCTCTTTGTATTGCTGGGCCTTCAGCATCCTCACCTTTGCT
CGCATCTGGATGCGTAAGTTGGGCTTGAAGCCGGGGCAGCTGGTTCGACA
CCTGTGGGGGGACTTTGTCCTCAACGTCAAGACGCTGGCCGTCAGCCGCT
ACACGCCCGAGAGCAAGGCAAAGCCCATGTTCGTGGCCATGATTTTGGAC
CCAATTTGGCAGATTTATGAAGCGACCGTGCTCGGAAAAGATCTGCAGAA
GGTTGGAAAGATGGTCAAGCGTTTGGATTTGGAAGTGCCAGCTCGCGAAC
TTAATCCAAAGGACCTTCGTGGCACTGCCTCTGCTATCTTTCGACGTTGG
CTTCCTCTCGCCCAAGCTGTGCTGGACATGGTCGTGGACACTGTCCCCGA
CCCCGTCCAAGCGCAGTACCGTAGGATTGGAGCCCTGTGGCCGCCCATTC
AAATGCCGGACGCAGCTTTCTCCGATGAAGAGAAAAGCGGCAGGGACGAA
AGAGAAACAGACGCGGCGCGCGGGAAGGCGATGGAGCGAGTGCGAAAGTG
CGTCGCCCAGTGCTCTGTCCTAGATGACGCCCCAGTCGTAGCGTTCGTCT
CAAAAGTGGTGCCGGTGCGCGCGGTCGAGTTAGGCGAGTGGTGTGTCTCT
TCCGCATATTCCGGAGGCGATCGTGACGGGGACGTATTCGTGGCATTTGC
CCGTGTTTTTAGCGGCATCCTGCGACCAGACTCCGACTTGTTCGTCCTTG
GGCCCAAGTACCATCCCCAGAGGAAGACCACGAGAAGCCACGTCCGGGCT
CTTTCAGGAGAAGGAACTCTTGGACTCTTCATGATGATGGGCACGTCCAT
GCTCCCCGTCCCCTTTGTGCCTGCGGGCAATTTGGTGGCCATTGCAGGGT
TGGAGGGCCTTGTTGTCAAGTCGGCAACCTTATCCTCGACACTTGCGTGC
CCAGCCCTCCGCGCCATGACTTTGCAGGCTAAGCCGATTGTACGGGTGGC
CGTGGAAGTAGTCCGGCAAGGAGACCTGGAGGCGCTCGAGAGAGGGCTTG
CCAAGCTCTACCAGGCCGATCCGGCTGTCGAGATCAGTGTACAAGAGAAC
GGGGAGCATGTTATTACTGCACTTGGCGAGCTTCACCTAGAACAGTGTCT
TAAGGACCTTCGGGATCGCTACTCTCGCGTGGAAATACAGGCATCGATGC
CTCTTGTAGCTTTCCGCGAGAGTGTGGCCTTTGAGAGAATGGCTCCTGAG
CAGATAGATTGTCCTCCTCAATTGTCTTTGCCGCCCTGGTCAGAAGAAGA
AGGAGTCGCAACGTCAAGTGGGGGTGTATGTAAAATCATAACCTCTTCTG
GCGATTGCCGTTTGACAATCCGCTGCCTGGCTATGCCCGCCCCTTTGGCA
CAATTAATCGACACAGAACCATTCGAAATGCGCAAGGTGGTGCTCCGAAT
GAGACACGGAAAGGTAGCGCAAGAAAGCACAGTGGACGACGACGACGACG
ACGACGTCCCAGCGGCGATGCGACGGATGTCTGTGGTCAACAAGGAATGC
GGTGACTTTGTGGACGACAGACGGATTTTCCGGCAGAAGCTCGAGGACTG
CCTCAGACAGGAGCGGGAAGGAAAGAGAAATGATGAAACTCACGAACCAA
TTGAAGTAAACGAGAGATGGACTGGGCTTAGTGCTGAGATGGATGCCATC
CTGGCTTTTGGCCCCCGAAATGTGGGACCCAACATGCTTTGGAAGGCGCC
GGATTTTGTTTTCAGTGTCTTATGGGCAGCAGGCGGTGGTTCGGAGGAAA
CCGAAAGTGATGTTGGCCTTGTGGATGCGGGGAAACTTAATGAGTGGAAG
AAATCCTTTGCGTGGCCAACCTTGGAGAACAGCATTCTTGTTGGCTTCCA
GATGGCGACCGCCAGTGGTCCATTAGCCGAAGAACAGATGTACGGCGTGG
CTTTCGTGGTGGAGGAAGTAGCGTTGCTCCTGAAGCGCGAGGAGTTTTGT
GCAGCAGAAGAAGTAGGAAAAGACAAAGCACCAAAAGGGGAACGAAAACA
AGAAGGACAAGAGCGAGAACAAGGACAAGATCAAGGAGGCAAATTTGCAA
TTCCACCTTTGACTTGTGAGGATCTCAACATATGGCTGACTGCACGGCTG
GGTAGCATCACCGGACAGGTGATGTCCTCATGCAAGAGCGCCTGTCGGGC
TGCTTTTCTCTCTTCGCCAGTTCGCCTGGTGGAAGCGCTTTTTGAGTGTG
ATCTCCAATGCGACCGGGTAAGTAAAACATTCAGGAAACCTTTGACTCTA
CATGTCTGCACGCGAATCAAACTCTCTACTACTTTTCATGGTGACCATTA
CACGCGCGCGCAATAAAATTGCGAACAAACAGATGCAACTGGGTAAATTG
TACGGCGTGCTATCGCGGCGGCGAGGGCGGGTTGTTGAAGAAGACATTAT
CGAAGGTACCGATCTTTTCATCATCAAGGCCCTTCTACCTGTTGCAGAGA
GCTTTGGATTCGCCACGGAACTTCTTAAGAAGACGTCTGGTGCAGCGACT
TCGCCCCAGCTGGCCTTTTCTCATTGGGAACGTATGGAGATGAACCCATT
TTGGCGTCCGCAGAATGAAGAGGACCGGGAGGAGTTTGGGGAGACGATGA
CCAGCGAAAGTAACGTGGCACGCAAGTATATTGATGATACTCGCCGCCGC
AAGGGCTTGCAGATCGGGGACAAGATAGTTGTACATGCCGAGAAGCAACG
CACTTTGAGTCGCAAAAAGTAGATTTGGGAGATGGATTCGATGACGCCCC
CCTCCCCCCCCCACTAAAAAGTACCAGCGATCTGTGAGGAAGCACGTGA

protein sequence of NO03G02840.4

>NO03G02840.4-protein ID=NO03G02840.4-protein|Name=NO03G02840.4|organism=Nannochloropsis oceanica|type=polypeptide|length=1056bp
MARRVSADELVACQGRQHNIRNVCILAHVDHGKTTLSDSLVSSNGIISAK
LAGKLRFLDSTEEEQQRGITMKSSAISLLHTKEIRQRPGSTPPTVADPAP
QESPVAASPPPPPLASTPMAAQRAAPSMPSSVSLPPSSSQDFLINLIDSP
GHIDFSSDVSTATRLSDGAIVVVDVLEGVCTQTHAVLRQAWSEGMKPCLV
LNKLDRLILEVRLTPLEAYWHLQRVLEQVNAISSSLITSETFKLDETETF
TDNWEKEWLFAPERGNVVFASSLYCWAFSILTFARIWMRKLGLKPGQLVR
HLWGDFVLNVKTLAVSRYTPESKAKPMFVAMILDPIWQIYEATVLGKDLQ
KVGKMVKRLDLEVPARELNPKDLRGTASAIFRRWLPLAQAVLDMVVDTVP
DPVQAQYRRIGALWPPIQMPDAAFSDEEKSGRDERETDAARGKAMERVRK
CVAQCSVLDDAPVVAFVSKVVPVRAVELGEWCVSSAYSGGDRDGDVFVAF
ARVFSGILRPDSDLFVLGPKYHPQRKTTRSHVRALSGEGTLGLFMMMGTS
MLPVPFVPAGNLVAIAGLEGLVVKSATLSSTLACPALRAMTLQAKPIVRV
AVEVVRQGDLEALERGLAKLYQADPAVEISVQENGEHVITALGELHLEQC
LKDLRDRYSRVEIQASMPLVAFRESVAFERMAPEQIDCPPQLSLPPWSEE
EGVATSSGGVCKIITSSGDCRLTIRCLAMPAPLAQLIDTEPFEMRKVVLR
MRHGKVAQESTVDDDDDDDVPAAMRRMSVVNKECGDFVDDRRIFRQKLED
CLRQEREGKRNDETHEPIEVNERWTGLSAEMDAILAFGPRNVGPNMLWKA
PDFVFSVLWAAGGGSEETESDVGLVDAGKLNEWKKSFAWPTLENSILVGF
QMATASGPLAEEQMYGVAFVVEEVALLLKREEFCAAEEVGKDKAPKGERK
QEGQEREQGQDQGGKFAIPPLTCEDLNIWLTARLGSITGQVMSSCKSACR
AAFLSSPVRLVEALFECDLQCDRVSKTFRKPLTLHVCTRIKLSTTFHGDH
YTRAQ*

mRNA from alignment at chr3:852636..857942+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G02840.4 ID=NO03G02840.4|Name=NO03G02840.4|organism=Nannochloropsis oceanica|type=mRNA|length=5307bp|location=Sequence derived from alignment at chr3:852636..857942+ (Nannochloropsis oceanica)
ACAGGCGGGCTTCATTCCAGATAGACAAACTCCACTAGAAGGAAACCCGC
TCGCAATCAACCTCCCCACGCGTCGCATCATACAATGAGACTGGAGCTCA
CATCTTTGCTTTGGTGAATCTGAGGCACACACAGGAAGCGCGCAAAGTAA
GTGAGGTTGCGGAAGAGTAGCTTCTAGGAAAGGCCACGTATAGGCAGCAT
GACAAATTGTCAGACTATGTGCTTCGGCGGCATCCTGTCAAATCTCTCTG
CCTCCCTCCCAGTCTTCCTTCCGGTTGTGCAGGCAGCAAGTACCCCCCAT
GGCACGCCGGGTCAGCGCCGACGAGCTGGTGGCATGTCAGGGACGGCAAC
ATAATATCCGAAACGTGTGCATTTTGGCGCATGTAGACCACGGAAAGACC
ACGTAAGTCTTCCTCCGCGACCATCCTGTCACCTCTCCGCCCTCTCACAC
GTTACTCACATCATTCCTCGATACTTACCTTATGATTAATTTTTCTGCAG
TCTTTCGGACAGTTTGGTTAGTTCGAATGGTATTATCTCTGCGAAGCTTG
CCGGGAAATTGCGCTTCCTCGATTCGACGTGAGTATTCATACATTTGTGT
GGAGAGGGAAAGTCACTCCACCCAGCTTATTTGTATTGCCATATCTCTTA
ATGCCCGTCTCACCCCTTTCAGTGAAGAAGAGCAGCAACGTGGAATCACC
ATGAAATCAAGTGCTATCTCGCTACTACATACCAAAGAGATACGTCAACG
TCCAGGCTCTACGCCGCCGACGGTGGCGGACCCGGCGCCACAAGAGAGTC
CAGGTGAGAAAGTGAATATTTAAACGACATGTTCTCCTTTAGTGATACAA
ATGGCATAATTTGAAGTAAAACTGACAAATTTTGTTGAAAAAATACGCTA
CTTTTATCTTGGGGTAGTGGCAGCATCACCACCACCACCACCACTCGCGT
CAACACCAATGGCAGCGCAGAGAGCCGCCCCAAGCATGCCCTCCTCCGTC
AGCCTCCCGCCTTCGTCGTCACAGGACTTTCTCATCAATTTGATCGACTC
ACCGGGCCACATCGACTTTTCTAGTGATGTGTCGACAGCAACTCGCTTGT
CTGATGGGGCGATTGTGGTCGTGGACGTGTTGGAGGGAGTCTGTACGCAG
GTACGTAGGGCAGCTGGGATTGGAAAATGGTGTGGTAGATGGGCTCATGC
ATGCATTTCTCTGTGGGCCATCATCTTATTCGTCTTCTTACTCTCCCCAC
TCCCCGTTATAGACTCATGCGGTGCTGCGTCAGGCATGGAGCGAGGGAAT
GAAGCCTTGTCTGGTTTTAAACAAGGTAAAGTCCGTCATGTATATCAGAG
CCACCACCGCTTCTGTACCGGTGGATTCGTGCACCATAGCTCATGTCATA
CTTTCCGAATCTTTATATCACACACGGCTATGTAGCTCGATAGACTTATC
CTAGAGGTTCGCTTGACCCCCCTGGAGGCATACTGGCATCTGCAACGCGT
GCTTGAGCAGGTGAACGCCATCAGCTCCTCTCTAATCACCAGCGAGACCT
TCAAGCTTGATGAGACGGAGACCTTCACTGACAACTGGGAAAAGGTAGGA
GAAGTACGAAGACCCGACGAGAAAATGATTAGTGATAGGGTATTTTAATA
GCACCCAATGAGAGGTCTCATCATCACTCCCTCTTCCCTCTTCTCTTATC
TATCCTCCTCCCTGCCATCCCTACCGAAGGAGTGGCTATTTGCACCAGAG
CGGGGTAATGTGGTCTTTGCCAGCTCTTTGTATTGCTGGGCCTTCAGCAT
CCTCACCTTTGCTCGCATCTGGATGCGTAAGTTGGGCTTGAAGCCGGGGC
AGCTGGTTCGACACCTGTGGGGGGACTTTGTCCTCAACGTCAAGACGCTG
GCCGTCAGCCGCTACACGCCCGAGAGCAAGGCAAAGCCCATGTTCGTGGC
CATGATTTTGGACCCAATTTGGCAGATTTATGAAGCGACCGTGCTCGGAA
AAGATCTGCAGAAGGTTGGAAAGATGGTCAAGCGTTTGGATTTGGTAAGC
GCCTTTTTCGGGGGCAAGATGGAGAAAGGCAGGCGTGCAACCCTGTGCAG
ACAGGACCGGATTATTTATTACATTTTGGCTTATTTCCTCACCTTCCATA
TCTCACACTTATAGGAAGTGCCAGCTCGCGAACTTAATCCAAAGGACCTT
CGTGGCACTGCCTCTGCTATCTTTCGACGTTGGCTTCCTCTCGCCCAAGC
TGTGCTGGACATGGTCGTGGACACTGTCCCCGACCCCGTCCAAGCGCAGT
ACCGTAGGATTGGAGCCCTGTGGCCGCCCATTCAAATGCCGGACGCAGCT
TTCTCCGATGAAGAGAAAAGCGGCAGGGACGAAAGAGAAACAGACGCGGC
GCGCGGGAAGGCGATGGAGCGAGTGCGAAAGTGCGTCGCCCAGTGCTCTG
TCCTAGATGACGCCCCAGTCGTAGCGTTCGTCTCAAAAGTGGTGCCGGTG
CGCGCGGTCGAGTTAGGCGAGTGGTGTGTCTCTTCCGCATATTCCGGAGG
CGATCGTGACGGGGACGTATTCGTGGCATTTGCCCGTGTTTTTAGCGGCA
TCCTGCGACCAGACTCCGACTTGTTCGTCCTTGGGCCCAAGTACCATCCC
CAGAGGAAGACCACGAGAAGCCACGTCCGGGCTCTTTCAGGAGAAGGAAC
TCTTGGACTCTTCATGATGATGGGCACGTCCATGCTCCCCGTCCCCTTTG
TGCCTGCGGGCAATTTGGTGGCCATTGCAGGGTTGGAGGGCCTTGTTGTC
AAGTCGGCAACCTTATCCTCGACACTTGCGTGCCCAGCCCTCCGCGCCAT
GACTTTGCAGGTACATGATTTCATTATTCCATTTCAGCTGGGATGTGACA
GTGCACGTCTCAAAGCAACAAAGTGATGAGCCATCTTATTGCACGCGCAT
CCATGTACTTACACAGGCTAAGCCGATTGTACGGGTGGCCGTGGAAGTAG
TCCGGCAAGGAGACCTGGAGGCGCTCGAGAGAGGGCTTGCCAAGCTCTAC
CAGGCCGATCCGGCTGTCGAGATCAGTGTACAAGAGAACGGGGAGCATGT
TATTACTGCACTTGGCGAGCTTCACCTAGAACAGTGTCTTAAGGTTGGTG
GTGCTCGCAACTGAAGGTGAAGGAGAACACGCAGTTGTGGTCTCGTTCTC
AATTTTTACATCCACCATCCAGGACCTTCGGGATCGCTACTCTCGCGTGG
AAATACAGGCATCGATGCCTCTTGTAGCTTTCCGCGAGAGTGTGGCCTTT
GAGAGAATGGCTCCTGAGCAGATAGATTGTCCTCCTCAATTGTCTTTGCC
GCCCTGGTCAGAAGAAGAAGGTACGGGAGGGGGAAGATTGGCGCGTCCTG
AATGTGAGTCCCTTTTTTGCTAAAGCTTCCCACCAACAAACGCATAACAG
GAGTCGCAACGTCAAGTGGGGGTGTATGTAAAATCATAACCTCTTCTGGC
GATTGCCGTTTGACAATCCGCTGCCTGGCTATGCCCGCCCCTTTGGCACA
ATTAATCGACACAGAACCATTCGAAGTAAGTGTGCGTGGCCAGTATTGCG
AAAGATAAAGGTCCTTATACGACATAAATAATTCATGACACTTTCCCGCA
CAATCTTATCAATAAGATGCGCAAGGTGGTGCTCCGAATGAGACACGGAA
AGGTAGCGCAAGAAAGCACAGTGGACGACGACGACGACGACGACGTCCCA
GCGGCGATGCGACGGATGTCTGTGGTCAACAAGGAATGCGGTGACTTTGT
GGACGACAGACGGATTTTCCGGCAGAAGCTCGAGGACTGCCTCAGACAGG
AGCGGGAAGGAAAGAGAAATGATGAAACTCACGAACCAATTGAAGTAAAC
GAGAGATGGACTGGGCTTAGTGCTGAGATGGATGCCATCCTGGCTTTTGG
CCCCCGAAATGTGGGACCCAACATGCTTTGGAAGGCGCCGGATTTTGTTT
TCAGTGTCTTATGGGCAGCAGGCGGTGGTTCGGAGGAAACCGAAAGTGAT
GTTGGCCTTGTGGATGCGGGGAAACTTAATGAGTGGAAGAAATCCTTTGC
GTGGCCAACCTTGGAGAACAGCATTCTTGTTGGCTTCCAGATGGCGACCG
CCAGTGGTGAGTGATAAATCGCGAGGTATAGGGCTCGGGCACGCGTTACA
TGTATATCACATCCTCCACCCGATGTCTCTATAATCAGGTCCATTAGCCG
AAGAACAGATGTACGGCGTGGCTTTCGTGGTGGAGGAAGTAGCGTTGCTC
CTGAAGCGCGAGGAGTTTTGTGCAGCAGAAGAAGTAGGAAAAGACAAAGC
ACCAAAAGGGGAACGAAAACAAGAAGGACAAGAGCGAGAACAAGGACAAG
ATCAAGGAGGCAAATTTGCAATTCCACCTTTGACTTGTGAGGATCTCAAC
ATATGGCTGACTGCACGGCTGGGTAGCATCACCGGACAGGTGATGTCCTC
ATGCAAGGTCAGTGGGTTGGTCAGAATGCAATATTCTCTACAGATGCATT
CGTCGAGCTCTCTTGTCACAAGTTAGGCACTAGATTGTTGCCCTTATGAG
CAGACGCACATCCTCACCGCTAATTTCCACGCCCGAAATTGCAGAGCGCC
TGTCGGGCTGCTTTTCTCTCTTCGCCAGTTCGCCTGGTGGAAGCGCTTTT
TGAGTGTGATCTCCAATGCGACCGGGTAAGTAAAACATTCAGGAAACCTT
TGACTCTACATGTCTGCACGCGAATCAAACTCTCTACTACTTTTCATGGT
GACCATTACACGCGCGCGCAATAAAATTGCGAACAAACAGATGCAACTGG
GTAAATTGTACGGCGTGCTATCGCGGCGGCGAGGGCGGGTTGTTGAAGAA
GACATTATCGAAGGTACCGATCTTTTCATCATCAAGGCCCTTCTACCTGT
TGCAGAGAGCTTTGGATTCGCCACGGAACTTCTTAAGAAGACGTCTGGTG
CAGCGACTTCGCCCCAGCTGGCCTTTTCTCATTGGGAACGTATGGAGATG
AACCCATTTTGGCGTCCGCAGAATGAAGAGGACCGGGAGGAGTTTGGGGA
GACGATGACCAGCGAAAGTAACGTGGCACGCAAGTATATTGATGATACTC
GCCGCCGCAAGGGCTTGCAGATCGGGGACAAGATAGTTGTACATGCCGAG
AAGCAACGCACTTTGAGTCGCAAAAAGTAGATTTGGGAGATGGATTCGAT
GACGCCCCCCTCCCCCCCCCACTAAAAAGTACCAGCGATCTGTGAGGAAG
CACGTGA

Coding sequence (CDS) from alignment at chr3:852636..857942+

>NO03G02840.4 ID=NO03G02840.4|Name=NO03G02840.4|organism=Nannochloropsis oceanica|type=CDS|length=3168bp|location=Sequence derived from alignment at chr3:852636..857942+ (Nannochloropsis oceanica)
ATGGCACGCCGGGTCAGCGCCGACGAGCTGGTGGCATGTCAGGGACGGCA
ACATAATATCCGAAACGTGTGCATTTTGGCGCATGTAGACCACGGAAAGA
CCACTCTTTCGGACAGTTTGGTTAGTTCGAATGGTATTATCTCTGCGAAG
CTTGCCGGGAAATTGCGCTTCCTCGATTCGACTGAAGAAGAGCAGCAACG
TGGAATCACCATGAAATCAAGTGCTATCTCGCTACTACATACCAAAGAGA
TACGTCAACGTCCAGGCTCTACGCCGCCGACGGTGGCGGACCCGGCGCCA
CAAGAGAGTCCAGTGGCAGCATCACCACCACCACCACCACTCGCGTCAAC
ACCAATGGCAGCGCAGAGAGCCGCCCCAAGCATGCCCTCCTCCGTCAGCC
TCCCGCCTTCGTCGTCACAGGACTTTCTCATCAATTTGATCGACTCACCG
GGCCACATCGACTTTTCTAGTGATGTGTCGACAGCAACTCGCTTGTCTGA
TGGGGCGATTGTGGTCGTGGACGTGTTGGAGGGAGTCTGTACGCAGACTC
ATGCGGTGCTGCGTCAGGCATGGAGCGAGGGAATGAAGCCTTGTCTGGTT
TTAAACAAGCTCGATAGACTTATCCTAGAGGTTCGCTTGACCCCCCTGGA
GGCATACTGGCATCTGCAACGCGTGCTTGAGCAGGTGAACGCCATCAGCT
CCTCTCTAATCACCAGCGAGACCTTCAAGCTTGATGAGACGGAGACCTTC
ACTGACAACTGGGAAAAGGAGTGGCTATTTGCACCAGAGCGGGGTAATGT
GGTCTTTGCCAGCTCTTTGTATTGCTGGGCCTTCAGCATCCTCACCTTTG
CTCGCATCTGGATGCGTAAGTTGGGCTTGAAGCCGGGGCAGCTGGTTCGA
CACCTGTGGGGGGACTTTGTCCTCAACGTCAAGACGCTGGCCGTCAGCCG
CTACACGCCCGAGAGCAAGGCAAAGCCCATGTTCGTGGCCATGATTTTGG
ACCCAATTTGGCAGATTTATGAAGCGACCGTGCTCGGAAAAGATCTGCAG
AAGGTTGGAAAGATGGTCAAGCGTTTGGATTTGGAAGTGCCAGCTCGCGA
ACTTAATCCAAAGGACCTTCGTGGCACTGCCTCTGCTATCTTTCGACGTT
GGCTTCCTCTCGCCCAAGCTGTGCTGGACATGGTCGTGGACACTGTCCCC
GACCCCGTCCAAGCGCAGTACCGTAGGATTGGAGCCCTGTGGCCGCCCAT
TCAAATGCCGGACGCAGCTTTCTCCGATGAAGAGAAAAGCGGCAGGGACG
AAAGAGAAACAGACGCGGCGCGCGGGAAGGCGATGGAGCGAGTGCGAAAG
TGCGTCGCCCAGTGCTCTGTCCTAGATGACGCCCCAGTCGTAGCGTTCGT
CTCAAAAGTGGTGCCGGTGCGCGCGGTCGAGTTAGGCGAGTGGTGTGTCT
CTTCCGCATATTCCGGAGGCGATCGTGACGGGGACGTATTCGTGGCATTT
GCCCGTGTTTTTAGCGGCATCCTGCGACCAGACTCCGACTTGTTCGTCCT
TGGGCCCAAGTACCATCCCCAGAGGAAGACCACGAGAAGCCACGTCCGGG
CTCTTTCAGGAGAAGGAACTCTTGGACTCTTCATGATGATGGGCACGTCC
ATGCTCCCCGTCCCCTTTGTGCCTGCGGGCAATTTGGTGGCCATTGCAGG
GTTGGAGGGCCTTGTTGTCAAGTCGGCAACCTTATCCTCGACACTTGCGT
GCCCAGCCCTCCGCGCCATGACTTTGCAGGCTAAGCCGATTGTACGGGTG
GCCGTGGAAGTAGTCCGGCAAGGAGACCTGGAGGCGCTCGAGAGAGGGCT
TGCCAAGCTCTACCAGGCCGATCCGGCTGTCGAGATCAGTGTACAAGAGA
ACGGGGAGCATGTTATTACTGCACTTGGCGAGCTTCACCTAGAACAGTGT
CTTAAGGACCTTCGGGATCGCTACTCTCGCGTGGAAATACAGGCATCGAT
GCCTCTTGTAGCTTTCCGCGAGAGTGTGGCCTTTGAGAGAATGGCTCCTG
AGCAGATAGATTGTCCTCCTCAATTGTCTTTGCCGCCCTGGTCAGAAGAA
GAAGGAGTCGCAACGTCAAGTGGGGGTGTATGTAAAATCATAACCTCTTC
TGGCGATTGCCGTTTGACAATCCGCTGCCTGGCTATGCCCGCCCCTTTGG
CACAATTAATCGACACAGAACCATTCGAAATGCGCAAGGTGGTGCTCCGA
ATGAGACACGGAAAGGTAGCGCAAGAAAGCACAGTGGACGACGACGACGA
CGACGACGTCCCAGCGGCGATGCGACGGATGTCTGTGGTCAACAAGGAAT
GCGGTGACTTTGTGGACGACAGACGGATTTTCCGGCAGAAGCTCGAGGAC
TGCCTCAGACAGGAGCGGGAAGGAAAGAGAAATGATGAAACTCACGAACC
AATTGAAGTAAACGAGAGATGGACTGGGCTTAGTGCTGAGATGGATGCCA
TCCTGGCTTTTGGCCCCCGAAATGTGGGACCCAACATGCTTTGGAAGGCG
CCGGATTTTGTTTTCAGTGTCTTATGGGCAGCAGGCGGTGGTTCGGAGGA
AACCGAAAGTGATGTTGGCCTTGTGGATGCGGGGAAACTTAATGAGTGGA
AGAAATCCTTTGCGTGGCCAACCTTGGAGAACAGCATTCTTGTTGGCTTC
CAGATGGCGACCGCCAGTGGTCCATTAGCCGAAGAACAGATGTACGGCGT
GGCTTTCGTGGTGGAGGAAGTAGCGTTGCTCCTGAAGCGCGAGGAGTTTT
GTGCAGCAGAAGAAGTAGGAAAAGACAAAGCACCAAAAGGGGAACGAAAA
CAAGAAGGACAAGAGCGAGAACAAGGACAAGATCAAGGAGGCAAATTTGC
AATTCCACCTTTGACTTGTGAGGATCTCAACATATGGCTGACTGCACGGC
TGGGTAGCATCACCGGACAGGTGATGTCCTCATGCAAGAGCGCCTGTCGG
GCTGCTTTTCTCTCTTCGCCAGTTCGCCTGGTGGAAGCGCTTTTTGAGTG
TGATCTCCAATGCGACCGGGTAAGTAAAACATTCAGGAAACCTTTGACTC
TACATGTCTGCACGCGAATCAAACTCTCTACTACTTTTCATGGTGACCAT
TACACGCGCGCGCAATAA

Synonyms

Publications