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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:784456..786819 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G02770.2 vs.
Match: EWM29709.1 (wd repeat protein [Nannochloropsis gaditana]) HSP 1 Score: 659.8 bits (1701), Expect = 5.700e-186 Identity = 343/433 (79.21%), Postives = 366/433 (84.53%), Query Frame = 0
Query: 1 MKFSLRGEFLASAGQSGVVYVWTVGGAGPSGAGGG---EEAPVTDEASVSA--DVIKLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARAECLHVYPHVDCVTSVHFHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDMITAACFNPEGTMAVAGLYRGQVFFYQAEGMKYYTQVECRNRHGALKGGKKVTGLCYDTSSQHKAAAAAASLS-SLSTFGPSTTGGNNTNSSSSSSSSVVSSTGILAG-------GAGSEQLLITTNDSRLRLYQTEDYSMLCKYKGLTNDHMQIKATFSEDGEYVISGSENGQIYIWKGTTPQQGAAGGLAGLSAPLTFKKDRNTAYEFFPATEIGGANPPIVSVALFVPAAAVMQSLKGTRHEEQWVGVGAGAAVSKMIIAADYSGKIRVFQRHSLT 421
MKFS+ GEFLASAGQSG+VYVW+VG +G S +GG EAPVTDEA DV+KLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTAR+ECLHVYPHVDCVT+V FHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDMITAACF+PEG+MAVAGLYRGQVFFYQ EGMKYYTQVECRNRHGALKGGKKVTGLCYDTSS AAA S S +T GP G +T+ SSS V S G GAG EQLLITTNDSRLRLYQTEDYSMLCKYKGLTNDHMQIKA+FSEDG+YVISGSENGQIYIWKGTTPQ G AGGLAGLSAPLTFKKDRNTAYEFFP+TEIGG NPPIVSVALFVPA AV ++KGT +EE+ + G G +SKMII+ADYSGKIRVFQRH LT
Sbjct: 139 MKFSIGGEFLASAGQSGIVYVWSVGHSGFSRSGGDGSDREAPVTDEAEAPGGLDVLKLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARSECLHVYPHVDCVTAVDFHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDMITAACFSPEGSMAVAGLYRGQVFFYQTEGMKYYTQVECRNRHGALKGGKKVTGLCYDTSSHTVAAAFPPSSSGGATTPGPRLQGAPSTSGGHSSSFPVSSGPVSAPGPTPHSVTGAGCEQLLITTNDSRLRLYQTEDYSMLCKYKGLTNDHMQIKASFSEDGKYVISGSENGQIYIWKGTTPQHGHAGGLAGLSAPLTFKKDRNTAYEFFPSTEIGGINPPIVSVALFVPANAVWHAMKGTSYEEEALNAGPGLPISKMIISADYSGKIRVFQRHVLT 571
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G02770.2 ID=NO03G02770.2|Name=NO03G02770.2|organism=Nannochloropsis oceanica|type=mRNA|length=2140bp AAACACAGGCCAGGCCCAATCTTCAGCGACCAGACTTGGCGTTTGTGGGA GCTGCCAGGTGATTCGATACAAAAAAAAACAGCGGCAGGTGTCCATCTCC GACCAGGTTACAGCTGCAACAGCAGAAGGCGGGAGTCATGGCGGACGATG CGCCAATCAACGTGGAGCAGCTGCGCTTCCAGGTGGTCGACAAAGATACG GGACAGGTCTTTCGCATCGACGAGATGGAGCAGCACATAAATATCAACGC ATACACTCTCTTTCCGTCGCGGGACGAGCTTGCGCAGCGGCTAGCCTCCA GCACAGCAGGGCAGGGAGGAGAAGACTCGGACGACGAGTCAACGTCTTCC CCAGGAAGTGGCCTGTCGGCAGCAGGACTGTCCGCCTTGTCATCTATGCT GGGATTCACCAAGCGAAAGAGCGTACAGCGGCAGGACACGATCGAAGGGC AAGTGCGCGTGAGCACCGTCAAGAAGGATGGTCCGGACTTTGGGGACCTG AAGGTCTCTCAGTGCTTGCAGGTGCGTACTTTCTTGCTTTTGCATCTCTT CTTTCCGAACCCCTCAACCCCTTTCAACTTGGCCATTTCTTCTCTTACCC ACCTATTCTTCTCCTCTGTCCTTACCTCACGAGGCGCACGACGGGCCCAT CTGGACGATGAAGTTCAGTTTGCGGGGAGAGTTTTTGGCTTCAGCAGGAC AAAGTGGAGTGGTGTATGTGTGGACGGTAGGTGGCGCGGGGCCCTCAGGT GCTGGGGGAGGAGAGGAGGCACCTGTGACGGACGAAGCAAGTGTGAGCGC GGATGTCATCAAGCTGTTGCGTCTGTCGCCCCACCGGCGATTCCGTGATC ACACTGCCGACGTGATTGATCTGTCGTGGAACAAAGAGAATTTTCTGCTT TCGGCATCAATTGACAAGACCGTGCGGCTGTGGCACACGGCCCGAGCGGA GTGTTTGCATGTCTACCCGCACGTGGACTGCGTCACCTCTGTGCATTTTC ACCCCAAGATCGACCATTTGTTTTTATCGGGCAATTTTGATAAAAAGCTG CGTGTCTGGAATGTGACCGACGGGCGGGTCAAGGAGTGGGCGAACACCCC CGACATGATTACAGCCGCCTGCTTCAACCCCGAGGGTACCATGGCCGTCG CCGGTCTTTATCGGGGCCAGGTATTTTTTTATCAGGCGGAAGGCATGAAG TATTACACCCAAGTTGAATGCCGCAACCGCCATGGAGCCCTCAAGGGCGG CAAGAAAGTCACCGGCCTGTGCTACGACACTTCTTCCCAGCACAAGGCTG CTGCCGCTGCCGCCTCCCTATCCTCTTTGTCCACATTCGGGCCATCAACC ACAGGAGGGAATAACACAAATTCCTCCTCCTCATCTTCCTCTAGCGTCGT CTCCTCCACGGGCATCCTAGCCGGCGGGGCAGGCTCGGAACAACTTCTCA TTACCACAAACGACTCGCGCCTCCGTCTGTACCAAACCGAAGATTATTCC ATGCTCTGCAAATACAAGGGCCTGACGAATGACCACATGCAGATCAAAGC CACTTTTAGTGAGGACGGGGAGTACGTGATTTCTGGTTCTGAGAACGGAC AGATATATATCTGGAAAGGCACCACTCCGCAACAGGGAGCGGCGGGAGGG CTGGCTGGTTTGAGCGCTCCGCTTACCTTCAAGAAGGATCGGAACACAGC CTATGAGTTTTTCCCTGCCACGGAGATAGGTGGTGCAAATCCACCAATTG TTTCGGTGGCTCTGTTTGTGCCCGCAGCCGCTGTGATGCAATCTTTGAAG GGGACGCGGCATGAGGAGCAATGGGTGGGGGTGGGGGCGGGGGCAGCTGT GAGTAAGATGATCATTGCTGCGGATTACTCGGGCAAGATTCGCGTGTTCC AGCGGCATTCCCTGACTGTAGGAAGTAGTGGGGGAACTAGTCCTGTGAAG ACGGCATGAGAAAGGGGAATGGGAATGTATTAAGAACACCTGAGAAGAAG GGAGCGCTTGATCGGCGGGCATGTATGCATATGCATGGCAAGGTCAGACA CACAGGGCTTTTATTTTGGTGGTTTTAAGGCATCTTCGCGAGGGATGTTG ATTTCAGAACGACACAACAAAGCAATATACACCGGAAAGA back to topprotein sequence of NO03G02770.2 >NO03G02770.2-protein ID=NO03G02770.2-protein|Name=NO03G02770.2|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp MKFSLRGEFLASAGQSGVVYVWTVGGAGPSGAGGGEEAPVTDEASVSADV IKLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARAECL HVYPHVDCVTSVHFHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDM ITAACFNPEGTMAVAGLYRGQVFFYQAEGMKYYTQVECRNRHGALKGGKK VTGLCYDTSSQHKAAAAAASLSSLSTFGPSTTGGNNTNSSSSSSSSVVSS TGILAGGAGSEQLLITTNDSRLRLYQTEDYSMLCKYKGLTNDHMQIKATF SEDGEYVISGSENGQIYIWKGTTPQQGAAGGLAGLSAPLTFKKDRNTAYE FFPATEIGGANPPIVSVALFVPAAAVMQSLKGTRHEEQWVGVGAGAAVSK MIIAADYSGKIRVFQRHSLTVGSSGGTSPVKTA* back to topmRNA from alignment at chr3:784456..786819- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G02770.2 ID=NO03G02770.2|Name=NO03G02770.2|organism=Nannochloropsis oceanica|type=mRNA|length=2364bp|location=Sequence derived from alignment at chr3:784456..786819- (Nannochloropsis oceanica) AAACACAGGCCAGGCCCAATCTTCAGCGACCAGACTTGGCGTTTGTGGGA
GCTGCCAGGTGATTCGATACAAAAAAAAACAGCGGCAGGTGTCCATCTCC
GACCAGGTTACAGCTGCAACAGCAGAAGGCGGGAGTCATGGCGGACGATG
CGCCAATCAACGTGGAGCAGCTGCGCTTCCAGGTGGTCGACAAAGATACG
GGACAGGTCTTTCGCATCGACGAGATGGAGCAGCACATAAATATCAACGC
ATACACTCTCTTTCCGTCGCGGGACGAGCTTGCGCAGCGGCTAGCCTCCA
GCACAGCAGGGCAGGGAGGAGAAGACTCGGACGACGAGTCAACGTCTTCC
CCAGGAAGTAAGTAGTGATGCGTGAATAGTAACGTTGCCTCTCTATTTGC
CAAAGCGATGTATGTTATGAATTCCGACCTTCTTCACTGATGTGGTAGAA
AGCTTGTCGCTGGGGATATCGCAGCTTATCTCTCACAGCCCCCTTTGCCC
TTCATCGTTCAAGTGCACATGCTTCTCTGCTCACGACACTCCTCACTCTA
TTCACATCCACTTTTGCCCGCAATTACTCAGGTGGCCTGTCGGCAGCAGG
ACTGTCCGCCTTGTCATCTATGCTGGGATTCACCAAGCGAAAGAGCGTAC
AGCGGCAGGACACGATCGAAGGGCAAGTGCGCGTGAGCACCGTCAAGAAG
GATGGTCCGGACTTTGGGGACCTGAAGGTCTCTCAGTGCTTGCAGGTGCG
TACTTTCTTGCTTTTGCATCTCTTCTTTCCGAACCCCTCAACCCCTTTCA
ACTTGGCCATTTCTTCTCTTACCCACCTATTCTTCTCCTCTGTCCTTACC
TCACGAGGCGCACGACGGGCCCATCTGGACGATGAAGTTCAGTTTGCGGG
GAGAGTTTTTGGCTTCAGCAGGACAAAGTGGAGTGGTGTATGTGTGGACG
GTAGGTGGCGCGGGGCCCTCAGGTGCTGGGGGAGGAGAGGAGGCACCTGT
GACGGACGAAGCAAGTGTGAGCGCGGATGTCATCAAGCTGTTGCGTCTGT
CGCCCCACCGGCGATTCCGTGATCACACTGCCGACGTGATTGATCTGTCG
TGGAACAAAGAGAATTTTCTGCTTTCGGCATCAATTGACAAGACCGTGCG
GCTGTGGCACACGGCCCGAGCGGAGTGTTTGCATGTCTACCCGCACGTGG
ACTGCGTCACCTCTGTGCATTTTCACCCCAAGATCGACCATTTGTTTTTA
TCGGGCAATTTTGATAAAAAGCTGCGTGTCTGGAATGTGACCGACGGGCG
GGTCAAGGAGTGGGCGAACACCCCCGACATGATTACAGCCGCCTGCTTCA
ACCCCGAGGGTACCATGGCCGTCGCCGGTCTTTATCGGGGCCAGGTATTT
TTTTATCAGGCGGAAGGCATGAAGTATTACACCCAAGTTGAATGCCGCAA
CCGCCATGGAGCCCTCAAGGGCGGCAAGAAAGTCACCGGCCTGTGCTACG
ACACTTCTTCCCAGCACAAGGCTGCTGCCGCTGCCGCCTCCCTATCCTCT
TTGTCCACATTCGGGCCATCAACCACAGGAGGGAATAACACAAATTCCTC
CTCCTCATCTTCCTCTAGCGTCGTCTCCTCCACGGGCATCCTAGCCGGCG
GGGCAGGCTCGGAACAACTTCTCATTACCACAAACGACTCGCGCCTCCGT
CTGTACCAAACCGAAGATTATTCCATGCTCTGCAAATACAAGGGCCTGAC
GAATGACCACATGCAGATCAAAGCCACTTTTAGTGAGGACGGGGAGTACG
TGATTTCTGGTTCTGAGAACGGACAGATATATATCTGGAAAGGCACCACT
CCGCAACAGGGAGCGGCGGGAGGGCTGGCTGGTTTGAGCGCTCCGCTTAC
CTTCAAGAAGGATCGGAACACAGCCTATGAGTTTTTCCCTGCCACGGAGA
TAGGTGGTGCAAATCCACCAATTGTTTCGGTGGCTCTGTTTGTGCCCGCA
GCCGCTGTGATGCAATCTTTGAAGGGGACGCGGCATGAGGAGCAATGGGT
GGGGGTGGGGGCGGGGGCAGCTGTGAGTAAGATGATCATTGCTGCGGATT
ACTCGGGCAAGATTCGCGTGTTCCAGCGGCATTCCCTGACTGTAGGAAGT
AGTGGGGGAACTAGTCCTGTGAAGACGGCATGAGAAAGGGGAATGGGAAT
GTATTAAGAACACCTGAGAAGAAGGGAGCGCTTGATCGGCGGGCATGTAT
GCATATGCATGGCAAGGTCAGACACACAGGGCTTTTATTTTGGTGGTTTT
AAGGCATCTTCGCGAGGGATGTTGATTTCAGAACGACACAACAAAGCAAT
ATACACCGGAAAGA back to topCoding sequence (CDS) from alignment at chr3:784456..786819- >NO03G02770.2 ID=NO03G02770.2|Name=NO03G02770.2|organism=Nannochloropsis oceanica|type=CDS|length=1302bp|location=Sequence derived from alignment at chr3:784456..786819- (Nannochloropsis oceanica) ATGAAGTTCAGTTTGCGGGGAGAGTTTTTGGCTTCAGCAGGACAAAGTGG AGTGGTGTATGTGTGGACGGTAGGTGGCGCGGGGCCCTCAGGTGCTGGGG GAGGAGAGGAGGCACCTGTGACGGACGAAGCAAGTGTGAGCGCGGATGTC ATCAAGCTGTTGCGTCTGTCGCCCCACCGGCGATTCCGTGATCACACTGC CGACGTGATTGATCTGTCGTGGAACAAAGAGAATTTTCTGCTTTCGGCAT CAATTGACAAGACCGTGCGGCTGTGGCACACGGCCCGAGCGGAGTGTTTG CATGTCTACCCGCACGTGGACTGCGTCACCTCTGTGCATTTTCACCCCAA GATCGACCATTTGTTTTTATCGGGCAATTTTGATAAAAAGCTGCGTGTCT GGAATGTGACCGACGGGCGGGTCAAGGAGTGGGCGAACACCCCCGACATG ATTACAGCCGCCTGCTTCAACCCCGAGGGTACCATGGCCGTCGCCGGTCT TTATCGGGGCCAGGTATTTTTTTATCAGGCGGAAGGCATGAAGTATTACA CCCAAGTTGAATGCCGCAACCGCCATGGAGCCCTCAAGGGCGGCAAGAAA GTCACCGGCCTGTGCTACGACACTTCTTCCCAGCACAAGGCTGCTGCCGC TGCCGCCTCCCTATCCTCTTTGTCCACATTCGGGCCATCAACCACAGGAG GGAATAACACAAATTCCTCCTCCTCATCTTCCTCTAGCGTCGTCTCCTCC ACGGGCATCCTAGCCGGCGGGGCAGGCTCGGAACAACTTCTCATTACCAC AAACGACTCGCGCCTCCGTCTGTACCAAACCGAAGATTATTCCATGCTCT GCAAATACAAGGGCCTGACGAATGACCACATGCAGATCAAAGCCACTTTT AGTGAGGACGGGGAGTACGTGATTTCTGGTTCTGAGAACGGACAGATATA TATCTGGAAAGGCACCACTCCGCAACAGGGAGCGGCGGGAGGGCTGGCTG GTTTGAGCGCTCCGCTTACCTTCAAGAAGGATCGGAACACAGCCTATGAG TTTTTCCCTGCCACGGAGATAGGTGGTGCAAATCCACCAATTGTTTCGGT GGCTCTGTTTGTGCCCGCAGCCGCTGTGATGCAATCTTTGAAGGGGACGC GGCATGAGGAGCAATGGGTGGGGGTGGGGGCGGGGGCAGCTGTGAGTAAG ATGATCATTGCTGCGGATTACTCGGGCAAGATTCGCGTGTTCCAGCGGCA TTCCCTGACTGTAGGAAGTAGTGGGGGAACTAGTCCTGTGAAGACGGCAT GA back to top
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