NO03G02770.2, NO03G02770.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02770.2
Unique NameNO03G02770.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2140
Alignment locationchr3:784456..786819 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:784456..786819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G02770.2 vs.
Match: EWM29709.1 (wd repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 659.8 bits (1701), Expect = 5.700e-186
Identity = 343/433 (79.21%), Postives = 366/433 (84.53%), Query Frame = 0
Query:    1 MKFSLRGEFLASAGQSGVVYVWTVGGAGPSGAGGG---EEAPVTDEASVSA--DVIKLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARAECLHVYPHVDCVTSVHFHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDMITAACFNPEGTMAVAGLYRGQVFFYQAEGMKYYTQVECRNRHGALKGGKKVTGLCYDTSSQHKAAAAAASLS-SLSTFGPSTTGGNNTNSSSSSSSSVVSSTGILAG-------GAGSEQLLITTNDSRLRLYQTEDYSMLCKYKGLTNDHMQIKATFSEDGEYVISGSENGQIYIWKGTTPQQGAAGGLAGLSAPLTFKKDRNTAYEFFPATEIGGANPPIVSVALFVPAAAVMQSLKGTRHEEQWVGVGAGAAVSKMIIAADYSGKIRVFQRHSLT 421
            MKFS+ GEFLASAGQSG+VYVW+VG +G S +GG     EAPVTDEA      DV+KLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTAR+ECLHVYPHVDCVT+V FHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDMITAACF+PEG+MAVAGLYRGQVFFYQ EGMKYYTQVECRNRHGALKGGKKVTGLCYDTSS   AAA   S S   +T GP   G  +T+   SSS  V S      G       GAG EQLLITTNDSRLRLYQTEDYSMLCKYKGLTNDHMQIKA+FSEDG+YVISGSENGQIYIWKGTTPQ G AGGLAGLSAPLTFKKDRNTAYEFFP+TEIGG NPPIVSVALFVPA AV  ++KGT +EE+ +  G G  +SKMII+ADYSGKIRVFQRH LT
Sbjct:  139 MKFSIGGEFLASAGQSGIVYVWSVGHSGFSRSGGDGSDREAPVTDEAEAPGGLDVLKLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARSECLHVYPHVDCVTAVDFHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDMITAACFSPEGSMAVAGLYRGQVFFYQTEGMKYYTQVECRNRHGALKGGKKVTGLCYDTSSHTVAAAFPPSSSGGATTPGPRLQGAPSTSGGHSSSFPVSSGPVSAPGPTPHSVTGAGCEQLLITTNDSRLRLYQTEDYSMLCKYKGLTNDHMQIKASFSEDGKYVISGSENGQIYIWKGTTPQHGHAGGLAGLSAPLTFKKDRNTAYEFFPSTEIGGINPPIVSVALFVPANAVWHAMKGTSYEEEALNAGPGLPISKMIISADYSGKIRVFQRHVLT 571          
The following BLAST results are available for this feature:
BLAST of NO03G02770.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29709.15.700e-18679.21wd repeat protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02770NO03G02770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02770.2NO03G02770.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02770.2.cds1NO03G02770.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02770.2 ID=NO03G02770.2|Name=NO03G02770.2|organism=Nannochloropsis oceanica|type=mRNA|length=2140bp
AAACACAGGCCAGGCCCAATCTTCAGCGACCAGACTTGGCGTTTGTGGGA
GCTGCCAGGTGATTCGATACAAAAAAAAACAGCGGCAGGTGTCCATCTCC
GACCAGGTTACAGCTGCAACAGCAGAAGGCGGGAGTCATGGCGGACGATG
CGCCAATCAACGTGGAGCAGCTGCGCTTCCAGGTGGTCGACAAAGATACG
GGACAGGTCTTTCGCATCGACGAGATGGAGCAGCACATAAATATCAACGC
ATACACTCTCTTTCCGTCGCGGGACGAGCTTGCGCAGCGGCTAGCCTCCA
GCACAGCAGGGCAGGGAGGAGAAGACTCGGACGACGAGTCAACGTCTTCC
CCAGGAAGTGGCCTGTCGGCAGCAGGACTGTCCGCCTTGTCATCTATGCT
GGGATTCACCAAGCGAAAGAGCGTACAGCGGCAGGACACGATCGAAGGGC
AAGTGCGCGTGAGCACCGTCAAGAAGGATGGTCCGGACTTTGGGGACCTG
AAGGTCTCTCAGTGCTTGCAGGTGCGTACTTTCTTGCTTTTGCATCTCTT
CTTTCCGAACCCCTCAACCCCTTTCAACTTGGCCATTTCTTCTCTTACCC
ACCTATTCTTCTCCTCTGTCCTTACCTCACGAGGCGCACGACGGGCCCAT
CTGGACGATGAAGTTCAGTTTGCGGGGAGAGTTTTTGGCTTCAGCAGGAC
AAAGTGGAGTGGTGTATGTGTGGACGGTAGGTGGCGCGGGGCCCTCAGGT
GCTGGGGGAGGAGAGGAGGCACCTGTGACGGACGAAGCAAGTGTGAGCGC
GGATGTCATCAAGCTGTTGCGTCTGTCGCCCCACCGGCGATTCCGTGATC
ACACTGCCGACGTGATTGATCTGTCGTGGAACAAAGAGAATTTTCTGCTT
TCGGCATCAATTGACAAGACCGTGCGGCTGTGGCACACGGCCCGAGCGGA
GTGTTTGCATGTCTACCCGCACGTGGACTGCGTCACCTCTGTGCATTTTC
ACCCCAAGATCGACCATTTGTTTTTATCGGGCAATTTTGATAAAAAGCTG
CGTGTCTGGAATGTGACCGACGGGCGGGTCAAGGAGTGGGCGAACACCCC
CGACATGATTACAGCCGCCTGCTTCAACCCCGAGGGTACCATGGCCGTCG
CCGGTCTTTATCGGGGCCAGGTATTTTTTTATCAGGCGGAAGGCATGAAG
TATTACACCCAAGTTGAATGCCGCAACCGCCATGGAGCCCTCAAGGGCGG
CAAGAAAGTCACCGGCCTGTGCTACGACACTTCTTCCCAGCACAAGGCTG
CTGCCGCTGCCGCCTCCCTATCCTCTTTGTCCACATTCGGGCCATCAACC
ACAGGAGGGAATAACACAAATTCCTCCTCCTCATCTTCCTCTAGCGTCGT
CTCCTCCACGGGCATCCTAGCCGGCGGGGCAGGCTCGGAACAACTTCTCA
TTACCACAAACGACTCGCGCCTCCGTCTGTACCAAACCGAAGATTATTCC
ATGCTCTGCAAATACAAGGGCCTGACGAATGACCACATGCAGATCAAAGC
CACTTTTAGTGAGGACGGGGAGTACGTGATTTCTGGTTCTGAGAACGGAC
AGATATATATCTGGAAAGGCACCACTCCGCAACAGGGAGCGGCGGGAGGG
CTGGCTGGTTTGAGCGCTCCGCTTACCTTCAAGAAGGATCGGAACACAGC
CTATGAGTTTTTCCCTGCCACGGAGATAGGTGGTGCAAATCCACCAATTG
TTTCGGTGGCTCTGTTTGTGCCCGCAGCCGCTGTGATGCAATCTTTGAAG
GGGACGCGGCATGAGGAGCAATGGGTGGGGGTGGGGGCGGGGGCAGCTGT
GAGTAAGATGATCATTGCTGCGGATTACTCGGGCAAGATTCGCGTGTTCC
AGCGGCATTCCCTGACTGTAGGAAGTAGTGGGGGAACTAGTCCTGTGAAG
ACGGCATGAGAAAGGGGAATGGGAATGTATTAAGAACACCTGAGAAGAAG
GGAGCGCTTGATCGGCGGGCATGTATGCATATGCATGGCAAGGTCAGACA
CACAGGGCTTTTATTTTGGTGGTTTTAAGGCATCTTCGCGAGGGATGTTG
ATTTCAGAACGACACAACAAAGCAATATACACCGGAAAGA
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protein sequence of NO03G02770.2

>NO03G02770.2-protein ID=NO03G02770.2-protein|Name=NO03G02770.2|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MKFSLRGEFLASAGQSGVVYVWTVGGAGPSGAGGGEEAPVTDEASVSADV
IKLLRLSPHRRFRDHTADVIDLSWNKENFLLSASIDKTVRLWHTARAECL
HVYPHVDCVTSVHFHPKIDHLFLSGNFDKKLRVWNVTDGRVKEWANTPDM
ITAACFNPEGTMAVAGLYRGQVFFYQAEGMKYYTQVECRNRHGALKGGKK
VTGLCYDTSSQHKAAAAAASLSSLSTFGPSTTGGNNTNSSSSSSSSVVSS
TGILAGGAGSEQLLITTNDSRLRLYQTEDYSMLCKYKGLTNDHMQIKATF
SEDGEYVISGSENGQIYIWKGTTPQQGAAGGLAGLSAPLTFKKDRNTAYE
FFPATEIGGANPPIVSVALFVPAAAVMQSLKGTRHEEQWVGVGAGAAVSK
MIIAADYSGKIRVFQRHSLTVGSSGGTSPVKTA*
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mRNA from alignment at chr3:784456..786819-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02770.2 ID=NO03G02770.2|Name=NO03G02770.2|organism=Nannochloropsis oceanica|type=mRNA|length=2364bp|location=Sequence derived from alignment at chr3:784456..786819- (Nannochloropsis oceanica)
AAACACAGGCCAGGCCCAATCTTCAGCGACCAGACTTGGCGTTTGTGGGA GCTGCCAGGTGATTCGATACAAAAAAAAACAGCGGCAGGTGTCCATCTCC GACCAGGTTACAGCTGCAACAGCAGAAGGCGGGAGTCATGGCGGACGATG CGCCAATCAACGTGGAGCAGCTGCGCTTCCAGGTGGTCGACAAAGATACG GGACAGGTCTTTCGCATCGACGAGATGGAGCAGCACATAAATATCAACGC ATACACTCTCTTTCCGTCGCGGGACGAGCTTGCGCAGCGGCTAGCCTCCA GCACAGCAGGGCAGGGAGGAGAAGACTCGGACGACGAGTCAACGTCTTCC CCAGGAAGTAAGTAGTGATGCGTGAATAGTAACGTTGCCTCTCTATTTGC CAAAGCGATGTATGTTATGAATTCCGACCTTCTTCACTGATGTGGTAGAA AGCTTGTCGCTGGGGATATCGCAGCTTATCTCTCACAGCCCCCTTTGCCC TTCATCGTTCAAGTGCACATGCTTCTCTGCTCACGACACTCCTCACTCTA TTCACATCCACTTTTGCCCGCAATTACTCAGGTGGCCTGTCGGCAGCAGG ACTGTCCGCCTTGTCATCTATGCTGGGATTCACCAAGCGAAAGAGCGTAC AGCGGCAGGACACGATCGAAGGGCAAGTGCGCGTGAGCACCGTCAAGAAG GATGGTCCGGACTTTGGGGACCTGAAGGTCTCTCAGTGCTTGCAGGTGCG TACTTTCTTGCTTTTGCATCTCTTCTTTCCGAACCCCTCAACCCCTTTCA ACTTGGCCATTTCTTCTCTTACCCACCTATTCTTCTCCTCTGTCCTTACC TCACGAGGCGCACGACGGGCCCATCTGGACGATGAAGTTCAGTTTGCGGG GAGAGTTTTTGGCTTCAGCAGGACAAAGTGGAGTGGTGTATGTGTGGACG GTAGGTGGCGCGGGGCCCTCAGGTGCTGGGGGAGGAGAGGAGGCACCTGT GACGGACGAAGCAAGTGTGAGCGCGGATGTCATCAAGCTGTTGCGTCTGT CGCCCCACCGGCGATTCCGTGATCACACTGCCGACGTGATTGATCTGTCG TGGAACAAAGAGAATTTTCTGCTTTCGGCATCAATTGACAAGACCGTGCG GCTGTGGCACACGGCCCGAGCGGAGTGTTTGCATGTCTACCCGCACGTGG ACTGCGTCACCTCTGTGCATTTTCACCCCAAGATCGACCATTTGTTTTTA TCGGGCAATTTTGATAAAAAGCTGCGTGTCTGGAATGTGACCGACGGGCG GGTCAAGGAGTGGGCGAACACCCCCGACATGATTACAGCCGCCTGCTTCA ACCCCGAGGGTACCATGGCCGTCGCCGGTCTTTATCGGGGCCAGGTATTT TTTTATCAGGCGGAAGGCATGAAGTATTACACCCAAGTTGAATGCCGCAA CCGCCATGGAGCCCTCAAGGGCGGCAAGAAAGTCACCGGCCTGTGCTACG ACACTTCTTCCCAGCACAAGGCTGCTGCCGCTGCCGCCTCCCTATCCTCT TTGTCCACATTCGGGCCATCAACCACAGGAGGGAATAACACAAATTCCTC CTCCTCATCTTCCTCTAGCGTCGTCTCCTCCACGGGCATCCTAGCCGGCG GGGCAGGCTCGGAACAACTTCTCATTACCACAAACGACTCGCGCCTCCGT CTGTACCAAACCGAAGATTATTCCATGCTCTGCAAATACAAGGGCCTGAC GAATGACCACATGCAGATCAAAGCCACTTTTAGTGAGGACGGGGAGTACG TGATTTCTGGTTCTGAGAACGGACAGATATATATCTGGAAAGGCACCACT CCGCAACAGGGAGCGGCGGGAGGGCTGGCTGGTTTGAGCGCTCCGCTTAC CTTCAAGAAGGATCGGAACACAGCCTATGAGTTTTTCCCTGCCACGGAGA TAGGTGGTGCAAATCCACCAATTGTTTCGGTGGCTCTGTTTGTGCCCGCA GCCGCTGTGATGCAATCTTTGAAGGGGACGCGGCATGAGGAGCAATGGGT GGGGGTGGGGGCGGGGGCAGCTGTGAGTAAGATGATCATTGCTGCGGATT ACTCGGGCAAGATTCGCGTGTTCCAGCGGCATTCCCTGACTGTAGGAAGT AGTGGGGGAACTAGTCCTGTGAAGACGGCATGAGAAAGGGGAATGGGAAT GTATTAAGAACACCTGAGAAGAAGGGAGCGCTTGATCGGCGGGCATGTAT GCATATGCATGGCAAGGTCAGACACACAGGGCTTTTATTTTGGTGGTTTT AAGGCATCTTCGCGAGGGATGTTGATTTCAGAACGACACAACAAAGCAAT ATACACCGGAAAGA
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Coding sequence (CDS) from alignment at chr3:784456..786819-

>NO03G02770.2 ID=NO03G02770.2|Name=NO03G02770.2|organism=Nannochloropsis oceanica|type=CDS|length=1302bp|location=Sequence derived from alignment at chr3:784456..786819- (Nannochloropsis oceanica)
ATGAAGTTCAGTTTGCGGGGAGAGTTTTTGGCTTCAGCAGGACAAAGTGG
AGTGGTGTATGTGTGGACGGTAGGTGGCGCGGGGCCCTCAGGTGCTGGGG
GAGGAGAGGAGGCACCTGTGACGGACGAAGCAAGTGTGAGCGCGGATGTC
ATCAAGCTGTTGCGTCTGTCGCCCCACCGGCGATTCCGTGATCACACTGC
CGACGTGATTGATCTGTCGTGGAACAAAGAGAATTTTCTGCTTTCGGCAT
CAATTGACAAGACCGTGCGGCTGTGGCACACGGCCCGAGCGGAGTGTTTG
CATGTCTACCCGCACGTGGACTGCGTCACCTCTGTGCATTTTCACCCCAA
GATCGACCATTTGTTTTTATCGGGCAATTTTGATAAAAAGCTGCGTGTCT
GGAATGTGACCGACGGGCGGGTCAAGGAGTGGGCGAACACCCCCGACATG
ATTACAGCCGCCTGCTTCAACCCCGAGGGTACCATGGCCGTCGCCGGTCT
TTATCGGGGCCAGGTATTTTTTTATCAGGCGGAAGGCATGAAGTATTACA
CCCAAGTTGAATGCCGCAACCGCCATGGAGCCCTCAAGGGCGGCAAGAAA
GTCACCGGCCTGTGCTACGACACTTCTTCCCAGCACAAGGCTGCTGCCGC
TGCCGCCTCCCTATCCTCTTTGTCCACATTCGGGCCATCAACCACAGGAG
GGAATAACACAAATTCCTCCTCCTCATCTTCCTCTAGCGTCGTCTCCTCC
ACGGGCATCCTAGCCGGCGGGGCAGGCTCGGAACAACTTCTCATTACCAC
AAACGACTCGCGCCTCCGTCTGTACCAAACCGAAGATTATTCCATGCTCT
GCAAATACAAGGGCCTGACGAATGACCACATGCAGATCAAAGCCACTTTT
AGTGAGGACGGGGAGTACGTGATTTCTGGTTCTGAGAACGGACAGATATA
TATCTGGAAAGGCACCACTCCGCAACAGGGAGCGGCGGGAGGGCTGGCTG
GTTTGAGCGCTCCGCTTACCTTCAAGAAGGATCGGAACACAGCCTATGAG
TTTTTCCCTGCCACGGAGATAGGTGGTGCAAATCCACCAATTGTTTCGGT
GGCTCTGTTTGTGCCCGCAGCCGCTGTGATGCAATCTTTGAAGGGGACGC
GGCATGAGGAGCAATGGGTGGGGGTGGGGGCGGGGGCAGCTGTGAGTAAG
ATGATCATTGCTGCGGATTACTCGGGCAAGATTCGCGTGTTCCAGCGGCA
TTCCCTGACTGTAGGAAGTAGTGGGGGAACTAGTCCTGTGAAGACGGCAT
GA
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Synonyms
Publications