NO03G02270.1, NO03G02270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02270.1
Unique NameNO03G02270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1905
Alignment locationchr3:664112..666138 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:664112..666138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02270.1 vs.
Match: EWM29662.1 (tbc domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 597.8 bits (1540), Expect = 3.900e-167
Identity = 334/615 (54.31%), Postives = 418/615 (67.97%), Query Frame = 0 
Query:    1 MPRTVFISRFDAASPEGGKGPIEASSVVELGDFLVKVNDVDVVGKGARHVSTLLQKGAGHDSSVVLTFRRLKDTSRCGEGARERVKQDETDGSGFQLSEKHRVVIFKHLLASEHIDEARLKSLAANGIPDVDKHLRPLVWRVLLSYLPYDRSRWDAHLKEQRTAYQQFVHDLCIIVAPTSKNGIFPSSRSSSSSISTSTSTSTSTNDGGSW-SNKGNVMVDIP--KLSSYEPKGSTLLEPLEAEKTNTLCTENIDEETTLETSREDGQAPPSGGARTSCSSRSNDAIDMSTSRSEYLL-TRPRISSDQPLFDAVRKDVVRTHSDQNFYLDRIHGPARYDALLRILFIYAKINVGTRYIQGMNELVGTLLYVFASDPDAEWAQHAEADTLFCFTHLMSQLRDVFIERMDATDTGIEGRIQQLETLLARHDPALNKHFRMLGLDAHFYSLRWITTLFCREFTLPDSIAVWDALFADEKLPEFVLFFCLAMLLEQREILLRNDFGFNLQSLQNYSPEVEVKRLLDRMKALRSYDAQLGLGLD-----DLKPSKSRLRHFLARVKSHVQDEMPVAMDSFSTESKTQLSRAGAQLKNSFGSMRKLIVDNLSVLPPPEGAG 607
            +P TVF+S FD+ S +GGKGPIE S +V +GDFLV+VN  DVVGKGARH   L++  A  DS V LTFRRL+ +S   EG R R +      +G  L+E+HRV++F++LL S+ ID+ RL SLA +GIPDVDKHLRPL WR+LL YLP + S WDAHLK++R  Y Q V +L I+  P +     P S S         + S   N  GSW +   +  +D P   LSS   +        E +  NT  +    +          G APP        S R +  +D+S   S+  L TRPR  +D+ LF+ +RKDVVRTH DQNFY D+  G ARYDALLRILFIYAK N GTRYIQGMNEL GTL YV + D D EWA+HAEADT+F F  LMSQLRDVFIE+MD +DTGIE + +QLE LL RHDP L+KHFRM+GL+AHFYSLRWITTLFCREFTLPD+IAVWDALFAD+   +F+L+FCL+ML+EQR+ +LR  F   LQSLQ YSPE E+KRLL RM++LR+ D+  G  +D        PS SR+R++ +RV S ++D++P+A+ SFSTESK+ L RAGAQLK SFGSMRKLI D++SVLP P   G
Sbjct:   74 LPGTVFVSHFDSVSSQGGKGPIEESGLVGVGDFLVRVNGCDVVGKGARHALALIKDEASADS-VSLTFRRLQTSSISREGNRIRSE------AGIHLTEQHRVLMFRYLLDSKPIDKRRLASLAGDGIPDVDKHLRPLAWRILLLYLPDEVSLWDAHLKQERAIYYQLVQELTIMTGPAAS---CPPSASGHV-----INESEDQNFRGSWRAGDASPRLDTPLCALSSAPSQ--------EGDARNTAGSMKATDPNLTFCQGHPGSAPP-----LPRSGRGSGELDVSLGSSQDRLPTRPRFDADRSLFNEIRKDVVRTHPDQNFYQDQTFGTARYDALLRILFIYAKTNSGTRYIQGMNELAGTLFYVMSRDSDQEWAEHAEADTMFLFAQLMSQLRDVFIEKMDESDTGIESKFEQLEVLLERHDPTLSKHFRMIGLEAHFYSLRWITTLFCREFTLPDTIAVWDALFADKDFSDFILYFCLSMLMEQRQEMLRCSFAKCLQSLQAYSPEAEMKRLLHRMRSLRAQDSASGFRVDRRVGEAATPSTSRVRNYFSRVSSRMRDDVPIALGSFSTESKSHLKRAGAQLKASFGSMRKLIGDSMSVLPSPGATG 660
The following BLAST results are available for this feature:
BLAST of NO03G02270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29662.13.900e-16754.31tbc domain-containing protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02270NO03G02270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02270.1NO03G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02270.1.cds1NO03G02270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02270.1.cds2NO03G02270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02270.1 ID=NO03G02270.1|Name=NO03G02270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1905bp
ATGCCTCGAACGGTATTTATTTCTCGCTTCGACGCCGCAAGCCCAGAAGG
CGGTAAAGGCCCCATCGAGGCGAGCAGCGTGGTAGAATTAGGGGATTTTC
TCGTCAAGGTAAACGATGTGGATGTTGTTGGCAAAGGCGCGCGGCACGTA
TCGACGCTTCTCCAGAAAGGAGCTGGCCACGACAGCTCCGTCGTCTTGAC
GTTCCGAAGGCTCAAGGATACTTCTCGGTGTGGTGAGGGAGCACGGGAGA
GAGTTAAGCAAGACGAGACAGATGGAAGCGGTTTCCAATTATCAGAAAAA
CATCGGGTCGTCATTTTCAAGCATCTCCTGGCTAGCGAACACATTGACGA
GGCGCGTCTCAAGAGCTTGGCGGCCAACGGGATTCCAGACGTAGATAAGC
ATTTGCGCCCACTTGTTTGGCGCGTTTTGTTGTCCTACTTGCCGTACGAT
CGCTCGCGCTGGGATGCACACTTGAAAGAACAACGCACAGCCTATCAGCA
GTTTGTGCATGATCTCTGTATTATTGTGGCTCCGACGTCAAAAAATGGGA
TTTTCCCATCCAGCAGGAGCAGTAGCTCCAGCATCAGCACCAGCACCAGC
ACCAGCACCAGCACGAACGACGGAGGGAGCTGGAGCAACAAGGGCAATGT
GATGGTGGACATACCCAAACTGTCGTCCTATGAACCAAAGGGATCGACGC
TCCTAGAGCCCTTGGAAGCAGAAAAGACGAACACACTGTGCACTGAGAAC
ATCGACGAGGAAACAACTTTGGAAACCTCGCGAGAAGATGGACAAGCGCC
TCCATCTGGTGGCGCACGCACCAGTTGTAGTAGCAGAAGCAACGACGCAA
TTGACATGTCCACCAGCCGCTCAGAGTACCTTCTTACCCGGCCTCGGATC
TCGTCGGACCAGCCTTTGTTTGATGCGGTTCGCAAGGATGTAGTGCGCAC
TCATTCTGATCAAAATTTTTATCTTGATCGCATCCACGGCCCTGCGCGTT
ACGATGCTCTGCTGCGGATTCTCTTCATCTACGCCAAGATCAATGTGGGT
ACTCGTTATATTCAAGGAATGAATGAGCTGGTTGGCACTCTACTTTATGT
ATTTGCGTCTGATCCGGACGCTGAATGGGCGCAGCACGCCGAGGCAGATA
CCCTGTTCTGCTTCACGCACCTCATGTCGCAGCTTCGGGACGTTTTCATC
GAGAGGATGGATGCGACTGACACGGGTATTGAGGGCCGAATCCAACAATT
GGAGACTCTGTTGGCACGGCACGATCCTGCTCTAAACAAACATTTCCGCA
TGCTTGGCCTCGATGCGCACTTTTATTCGCTCCGATGGATCACTACGCTC
TTTTGCCGTGAGTTTACCCTTCCTGACAGTATCGCTGTATGGGACGCATT
GTTTGCAGACGAAAAGTTGCCTGAGTTTGTGCTTTTCTTTTGTTTAGCTA
TGCTCCTTGAGCAGCGGGAGATATTGCTGCGAAACGATTTCGGGTTTAAT
CTCCAGTCCTTGCAAAACTATTCACCCGAGGTGGAGGTCAAACGGCTGCT
GGACCGCATGAAGGCGTTGCGATCATACGACGCACAACTAGGCTTGGGCT
TGGATGATCTGAAGCCATCCAAAAGTCGTCTTCGCCACTTCTTGGCGCGC
GTTAAGTCGCATGTCCAGGACGAAATGCCAGTTGCTATGGATTCGTTCTC
GACTGAAAGCAAAACGCAGCTGAGCCGTGCTGGGGCGCAACTGAAGAACT
CCTTTGGTAGCATGCGCAAGCTTATTGTTGATAATTTGTCCGTTCTTCCC
CCTCCGGAAGGGGCAGGTAAGACGACTAGGCTACGCGACGTGAGGATGAC
ACCACGAGACAAGGCGGCGGGCTCTGCCTTGTCATCATTAAGAGACGAGC
CTTGA
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protein sequence of NO03G02270.1

>NO03G02270.1-protein ID=NO03G02270.1-protein|Name=NO03G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=635bp
MPRTVFISRFDAASPEGGKGPIEASSVVELGDFLVKVNDVDVVGKGARHV
STLLQKGAGHDSSVVLTFRRLKDTSRCGEGARERVKQDETDGSGFQLSEK
HRVVIFKHLLASEHIDEARLKSLAANGIPDVDKHLRPLVWRVLLSYLPYD
RSRWDAHLKEQRTAYQQFVHDLCIIVAPTSKNGIFPSSRSSSSSISTSTS
TSTSTNDGGSWSNKGNVMVDIPKLSSYEPKGSTLLEPLEAEKTNTLCTEN
IDEETTLETSREDGQAPPSGGARTSCSSRSNDAIDMSTSRSEYLLTRPRI
SSDQPLFDAVRKDVVRTHSDQNFYLDRIHGPARYDALLRILFIYAKINVG
TRYIQGMNELVGTLLYVFASDPDAEWAQHAEADTLFCFTHLMSQLRDVFI
ERMDATDTGIEGRIQQLETLLARHDPALNKHFRMLGLDAHFYSLRWITTL
FCREFTLPDSIAVWDALFADEKLPEFVLFFCLAMLLEQREILLRNDFGFN
LQSLQNYSPEVEVKRLLDRMKALRSYDAQLGLGLDDLKPSKSRLRHFLAR
VKSHVQDEMPVAMDSFSTESKTQLSRAGAQLKNSFGSMRKLIVDNLSVLP
PPEGAGKTTRLRDVRMTPRDKAAGSALSSLRDEP*
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mRNA from alignment at chr3:664112..666138+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02270.1 ID=NO03G02270.1|Name=NO03G02270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2027bp|location=Sequence derived from alignment at chr3:664112..666138+ (Nannochloropsis oceanica)
ATGCCTCGAACGGTATTTATTTCTCGCTTCGACGCCGCAAGCCCAGAAGG
CGGTAAAGGCCCCATCGAGGCGAGCAGCGTGGTAGAATTAGGGGATTTTC
TCGTCAAGGTAAACGATGTGGATGTTGTTGGCAAAGGCGCGCGGCACGTA
TCGACGCTTCTCCAGAAAGGAGCTGGCCACGACAGCTCCGTCGTCTTGAC
GTTCCGAAGGCTCAAGGATACTTCTCGGTGTGGTGAGGGAGCACGGGAGA
GAGTTAAGCAAGACGAGACAGATGGAAGCGGTTTCCAATTATCAGAAAAA
CGTAGGTTTTCCAGGAATGGGTGTAAAGATGGCGTACAAATATATTTTTC
GTAACGTACACCACCGCGATGATCCCCATTATATCTATACGCTCACATCT
TGCAATCACACTTTTCAATGTAGATCGGGTCGTCATTTTCAAGCATCTCC
TGGCTAGCGAACACATTGACGAGGCGCGTCTCAAGAGCTTGGCGGCCAAC
GGGATTCCAGACGTAGATAAGCATTTGCGCCCACTTGTTTGGCGCGTTTT
GTTGTCCTACTTGCCGTACGATCGCTCGCGCTGGGATGCACACTTGAAAG
AACAACGCACAGCCTATCAGCAGTTTGTGCATGATCTCTGTATTATTGTG
GCTCCGACGTCAAAAAATGGGATTTTCCCATCCAGCAGGAGCAGTAGCTC
CAGCATCAGCACCAGCACCAGCACCAGCACCAGCACGAACGACGGAGGGA
GCTGGAGCAACAAGGGCAATGTGATGGTGGACATACCCAAACTGTCGTCC
TATGAACCAAAGGGATCGACGCTCCTAGAGCCCTTGGAAGCAGAAAAGAC
GAACACACTGTGCACTGAGAACATCGACGAGGAAACAACTTTGGAAACCT
CGCGAGAAGATGGACAAGCGCCTCCATCTGGTGGCGCACGCACCAGTTGT
AGTAGCAGAAGCAACGACGCAATTGACATGTCCACCAGCCGCTCAGAGTA
CCTTCTTACCCGGCCTCGGATCTCGTCGGACCAGCCTTTGTTTGATGCGG
TTCGCAAGGATGTAGTGCGCACTCATTCTGATCAAAATTTTTATCTTGAT
CGCATCCACGGCCCTGCGCGTTACGATGCTCTGCTGCGGATTCTCTTCAT
CTACGCCAAGATCAATGTGGGTACTCGTTATATTCAAGGAATGAATGAGC
TGGTTGGCACTCTACTTTATGTATTTGCGTCTGATCCGGACGCTGAATGG
GCGCAGCACGCCGAGGCAGATACCCTGTTCTGCTTCACGCACCTCATGTC
GCAGCTTCGGGACGTTTTCATCGAGAGGATGGATGCGACTGACACGGGTA
TTGAGGGCCGAATCCAACAATTGGAGACTCTGTTGGCACGGCACGATCCT
GCTCTAAACAAACATTTCCGCATGCTTGGCCTCGATGCGCACTTTTATTC
GCTCCGATGGATCACTACGCTCTTTTGCCGTGAGTTTACCCTTCCTGACA
GTATCGCTGTATGGGACGCATTGTTTGCAGACGAAAAGTTGCCTGAGTTT
GTGCTTTTCTTTTGTTTAGCTATGCTCCTTGAGCAGCGGGAGATATTGCT
GCGAAACGATTTCGGGTTTAATCTCCAGTCCTTGCAAAACTATTCACCCG
AGGTGGAGGTCAAACGGCTGCTGGACCGCATGAAGGCGTTGCGATCATAC
GACGCACAACTAGGCTTGGGCTTGGATGATCTGAAGCCATCCAAAAGTCG
TCTTCGCCACTTCTTGGCGCGCGTTAAGTCGCATGTCCAGGACGAAATGC
CAGTTGCTATGGATTCGTTCTCGACTGAAAGCAAAACGCAGCTGAGCCGT
GCTGGGGCGCAACTGAAGAACTCCTTTGGTAGCATGCGCAAGCTTATTGT
TGATAATTTGTCCGTTCTTCCCCCTCCGGAAGGGGCAGGTAAGACGACTA
GGCTACGCGACGTGAGGATGACACCACGAGACAAGGCGGCGGGCTCTGCC
TTGTCATCATTAAGAGACGAGCCTTGA
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Coding sequence (CDS) from alignment at chr3:664112..666138+

>NO03G02270.1 ID=NO03G02270.1|Name=NO03G02270.1|organism=Nannochloropsis oceanica|type=CDS|length=1905bp|location=Sequence derived from alignment at chr3:664112..666138+ (Nannochloropsis oceanica)
ATGCCTCGAACGGTATTTATTTCTCGCTTCGACGCCGCAAGCCCAGAAGG
CGGTAAAGGCCCCATCGAGGCGAGCAGCGTGGTAGAATTAGGGGATTTTC
TCGTCAAGGTAAACGATGTGGATGTTGTTGGCAAAGGCGCGCGGCACGTA
TCGACGCTTCTCCAGAAAGGAGCTGGCCACGACAGCTCCGTCGTCTTGAC
GTTCCGAAGGCTCAAGGATACTTCTCGGTGTGGTGAGGGAGCACGGGAGA
GAGTTAAGCAAGACGAGACAGATGGAAGCGGTTTCCAATTATCAGAAAAA
CATCGGGTCGTCATTTTCAAGCATCTCCTGGCTAGCGAACACATTGACGA
GGCGCGTCTCAAGAGCTTGGCGGCCAACGGGATTCCAGACGTAGATAAGC
ATTTGCGCCCACTTGTTTGGCGCGTTTTGTTGTCCTACTTGCCGTACGAT
CGCTCGCGCTGGGATGCACACTTGAAAGAACAACGCACAGCCTATCAGCA
GTTTGTGCATGATCTCTGTATTATTGTGGCTCCGACGTCAAAAAATGGGA
TTTTCCCATCCAGCAGGAGCAGTAGCTCCAGCATCAGCACCAGCACCAGC
ACCAGCACCAGCACGAACGACGGAGGGAGCTGGAGCAACAAGGGCAATGT
GATGGTGGACATACCCAAACTGTCGTCCTATGAACCAAAGGGATCGACGC
TCCTAGAGCCCTTGGAAGCAGAAAAGACGAACACACTGTGCACTGAGAAC
ATCGACGAGGAAACAACTTTGGAAACCTCGCGAGAAGATGGACAAGCGCC
TCCATCTGGTGGCGCACGCACCAGTTGTAGTAGCAGAAGCAACGACGCAA
TTGACATGTCCACCAGCCGCTCAGAGTACCTTCTTACCCGGCCTCGGATC
TCGTCGGACCAGCCTTTGTTTGATGCGGTTCGCAAGGATGTAGTGCGCAC
TCATTCTGATCAAAATTTTTATCTTGATCGCATCCACGGCCCTGCGCGTT
ACGATGCTCTGCTGCGGATTCTCTTCATCTACGCCAAGATCAATGTGGGT
ACTCGTTATATTCAAGGAATGAATGAGCTGGTTGGCACTCTACTTTATGT
ATTTGCGTCTGATCCGGACGCTGAATGGGCGCAGCACGCCGAGGCAGATA
CCCTGTTCTGCTTCACGCACCTCATGTCGCAGCTTCGGGACGTTTTCATC
GAGAGGATGGATGCGACTGACACGGGTATTGAGGGCCGAATCCAACAATT
GGAGACTCTGTTGGCACGGCACGATCCTGCTCTAAACAAACATTTCCGCA
TGCTTGGCCTCGATGCGCACTTTTATTCGCTCCGATGGATCACTACGCTC
TTTTGCCGTGAGTTTACCCTTCCTGACAGTATCGCTGTATGGGACGCATT
GTTTGCAGACGAAAAGTTGCCTGAGTTTGTGCTTTTCTTTTGTTTAGCTA
TGCTCCTTGAGCAGCGGGAGATATTGCTGCGAAACGATTTCGGGTTTAAT
CTCCAGTCCTTGCAAAACTATTCACCCGAGGTGGAGGTCAAACGGCTGCT
GGACCGCATGAAGGCGTTGCGATCATACGACGCACAACTAGGCTTGGGCT
TGGATGATCTGAAGCCATCCAAAAGTCGTCTTCGCCACTTCTTGGCGCGC
GTTAAGTCGCATGTCCAGGACGAAATGCCAGTTGCTATGGATTCGTTCTC
GACTGAAAGCAAAACGCAGCTGAGCCGTGCTGGGGCGCAACTGAAGAACT
CCTTTGGTAGCATGCGCAAGCTTATTGTTGATAATTTGTCCGTTCTTCCC
CCTCCGGAAGGGGCAGGTAAGACGACTAGGCTACGCGACGTGAGGATGAC
ACCACGAGACAAGGCGGCGGGCTCTGCCTTGTCATCATTAAGAGACGAGC
CTTGA
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Synonyms
Publications