NO03G02260.1, NO03G02260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02260.1
Unique NameNO03G02260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length348
Alignment locationchr3:663358..663969 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:663358..663969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO03G02260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02260NO03G02260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02260.1NO03G02260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02260.1.cds1NO03G02260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02260.1.cds2NO03G02260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02260.1 ID=NO03G02260.1|Name=NO03G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=348bp
ATGCCACCTTACACGACACAGCATCGCTGCTACTATGGAGGGGTCCCTCC
CCCAAACTCGTACCGCCACTCTGACCACCGTCGACGCGTCTGCAATGCTT
TGGGAAGCCACTTTCGATGCTATCGAGGACGAGAAAGCCTCTCACGTCAG
CAGCAGCAGCAGCAGCAGCAGCACCAGCAGCAGCAACAACAACAGCAGCA
GCAGCAGCAGCATCAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAATAA
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protein sequence of NO03G02260.1

>NO03G02260.1-protein ID=NO03G02260.1-protein|Name=NO03G02260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MPPYTTQHRCYYGGVPPPNSYRHSDHRRRVCNALGSHFRCYRGRESLSRQ
QQQQQQQHQQQQQQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQQQQQQQQQQQ*
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mRNA from alignment at chr3:663358..663969+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02260.1 ID=NO03G02260.1|Name=NO03G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=612bp|location=Sequence derived from alignment at chr3:663358..663969+ (Nannochloropsis oceanica)
ATGGTAAGTGGGGACTGGGCACGTGACACTTACACGATCGCACTGTGACG
GAGGGACGAGGGACGAGAGCCTTCAGAAAAATGCAGCTGTGACAGGCGGT
CTGTGTGTCCGTTTCGCCTGCTCACACGATCAAGCGTCTGTAATCCTATC
ATCGTGCTGCATTCTTATTTGCTATGATTTATCTTGCCAGTATGCACGCT
TATTAGCCCTCTCGTCTCCAGATTCTTTTGGCTGGCCCGGCCTCCCTCCA
CTACCAAACACACGCAGCCACCTTACACGACACAGCATCGCTGCTACTAT
GGAGGGGTCCCTCCCCCAAACTCGTACCGCCACTCTGACCACCGTCGACG
CGTCTGCAATGCTTTGGGAAGCCACTTTCGATGCTATCGAGGACGAGAAA
GCCTCTCACGTCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCAGCAGCAA
CAACAACAGCAGCAGCAGCAGCAGCATCAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAATAA
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Coding sequence (CDS) from alignment at chr3:663358..663969+

>NO03G02260.1 ID=NO03G02260.1|Name=NO03G02260.1|organism=Nannochloropsis oceanica|type=CDS|length=348bp|location=Sequence derived from alignment at chr3:663358..663969+ (Nannochloropsis oceanica)
ATGCCACCTTACACGACACAGCATCGCTGCTACTATGGAGGGGTCCCTCC
CCCAAACTCGTACCGCCACTCTGACCACCGTCGACGCGTCTGCAATGCTT
TGGGAAGCCACTTTCGATGCTATCGAGGACGAGAAAGCCTCTCACGTCAG
CAGCAGCAGCAGCAGCAGCAGCACCAGCAGCAGCAACAACAACAGCAGCA
GCAGCAGCAGCATCAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAATAA
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Synonyms
Publications