NO03G01760.1, NO03G01760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01760.1
Unique NameNO03G01760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2048
Alignment locationchr3:550596..552799 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:550596..552799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01760.1 vs.
Match: EWM29624.1 (dihydrolipoyl dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 880.9 bits (2275), Expect = 1.800e-252
Identity = 447/506 (88.34%), Postives = 475/506 (93.87%), Query Frame = 0 
Query:    1 MLASRTLLRGGSRSRLTTSSQSIMAPASRTFAAAAAESQYELVVVGGGPGGYVAAIKAAQLGMKTACVEVRGALGGTCLNVGCIPSKALLHSSHLFDQANHDFKKHGIKINGTIEVDLKTMMGGKEKAVRQLTGGIEYLFKKNGVDYVKGFGKVAGPNSVHVKLNDGGESTLETKNILIATGSEVTPLPTCPVENEKGRIVDSTGALVLKTVPKTMVVVGGGVIGLEMGSVWRRLGTKVTVVEFLDRICPSLDNEIGQSFQKILAKQGINFKMSTKVTGATVKDDGVSLTLEPAAGGAAETFEAEVVLVAIGRRPFTRNMGLEEQGIELDKAGRITVDSHFKTVIPSIHAIGDAIVGPMLAHKAEEEGIAVVEMMKGLAGHVNYDAIPGVIYTHPEVAAAGKTEEELKAQGVAYNKGVFPFSANSRARAVGESDGMVKILSDKTTDRILGIHIIGSNAGEMIAEGVLGMEYGASSEDIARTCHAHPTLSEAFKEACMATSSKAIHF 507
            MLASRTLLR   R    T    ++  ASRTFAAAA  S Y+LVVVGGGPGGYVAAIK AQLGMKTACVEVRGALGGTCLNVGCIPSKALLHSSHLF+QANHDFKKHGIKINGT+EVDLKTMMGGK+KAVRQLTGGIEYLFKKNGVDYVKGFGKVAGP++VHVKLN GGES LETKNILIATGSEVTPLPTCPV+NEKGRIVDSTGALVLKTVPKTM V+GGGVIGLEMGSVWRRLG+KVTV+EFLDRICPSLD E+GQ+FQKILAKQGI FK+ TKV G+TVK+DGVSL+LEPAAGGAAE F+AEVVLVAIGRRPFTRN+GLEEQGI LDKAGR+TVD+HF+T +PSIHAIGDAIVGPMLAHKAEEEGIA VEMM+GLAGHVNYDA+PGVIYTHPEVAAAGKTEEELKA GV YNKG FPFSANSRARAVGE+DG+VKILSDKTTDRILGIHIIGSNAGEMIAEGVLGMEYGASSEDIARTCHAHPTLSEAFKEACMATSSKAIHF
Sbjct:    1 MLASRTLLRAALRGVRPTPG--VVTHASRTFAAAA--SSYDLVVVGGGPGGYVAAIKGAQLGMKTACVEVRGALGGTCLNVGCIPSKALLHSSHLFEQANHDFKKHGIKINGTVEVDLKTMMGGKDKAVRQLTGGIEYLFKKNGVDYVKGFGKVAGPHNVHVKLNAGGESDLETKNILIATGSEVTPLPTCPVDNEKGRIVDSTGALVLKTVPKTMAVIGGGVIGLEMGSVWRRLGSKVTVIEFLDRICPSLDQEVGQAFQKILAKQGIQFKLGTKVVGSTVKEDGVSLSLEPAAGGAAENFDAEVVLVAIGRRPFTRNIGLEEQGIALDKAGRVTVDAHFRTSVPSIHAIGDAIVGPMLAHKAEEEGIAAVEMMQGLAGHVNYDAVPGVIYTHPEVAAAGKTEEELKAMGVEYNKGTFPFSANSRARAVGEADGLVKILSDKTTDRILGIHIIGSNAGEMIAEGVLGMEYGASSEDIARTCHAHPTLSEAFKEACMATSSKAIHF 502
The following BLAST results are available for this feature:
BLAST of NO03G01760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29624.11.800e-25288.34dihydrolipoyl dehydrogenase [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01760NO03G01760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01760.1NO03G01760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01760.1.cds1NO03G01760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01760.1 ID=NO03G01760.1|Name=NO03G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2048bp
AAGCTCCATCGAATAGACGCAGAAATTAAATACCCCCGAAACTAAAATGA
ATGACGAGCGAGGTTACGCGTTCTTGCCGTAGCTGTCGAATGCATGCTGG
TGGTACGTGTGCATAGAAGTGGCAAATCACAAAGGCGGCGAAGGGAGCAT
CGCCGCCGCCAAACGACGACCGAGAAGCACCGCCCTCCTCCTTTGCATTT
CCCGCACGCGATGACAATCGTCAATCAAGTACACCAACAAATCACGCGAG
GAAAAGAAGGAGAAGCTAGTCAATGTGAACACACTAAGCGAGCACCCAAG
GATGCTGGCATCACGCACATTGCTCCGAGGAGGCAGCAGGAGCAGGCTCA
CGACCAGTAGCCAGAGCATCATGGCGCCCGCTAGTCGTACCTTTGCGGCC
GCCGCTGCGGAGTCCCAGTATGAATTAGTCGTGGTAGGAGGTGGACCCGG
GGGCTACGTCGCCGCCATTAAAGCCGCACAACTGGGTATGAAGACAGCGT
GTGTTGAGGTCCGTGGTGCGTTGGGCGGAACGTGCTTGAACGTGGGATGC
ATCCCGTCCAAGGCGTTGCTGCACTCGTCGCATCTCTTTGATCAGGCCAA
CCATGACTTCAAGAAGCATGGAATCAAGATTAATGGCACGATAGAGGTGG
ACCTCAAGACAATGATGGGGGGTAAGGAGAAGGCGGTCCGTCAACTCACG
GGGGGCATCGAGTATTTGTTCAAGAAGAACGGGGTGGATTACGTGAAGGG
GTTTGGAAAAGTCGCGGGGCCTAACAGTGTGCATGTCAAGCTGAACGATG
GTGGGGAGAGCACGCTCGAGACCAAGAACATACTGATTGCCACGGGCTCC
GAGGTCACGCCGTTACCGACCTGCCCGGTGGAGAATGAAAAGGGCCGCAT
AGTCGATTCCACAGGGGCGCTGGTGTTGAAAACGGTCCCCAAGACCATGG
TGGTGGTGGGTGGTGGGGTGATCGGCCTCGAAATGGGCTCGGTGTGGCGT
CGCCTTGGCACGAAGGTGACGGTCGTCGAGTTTCTGGACCGAATCTGTCC
TTCCCTCGACAATGAAATCGGACAGTCTTTCCAGAAGATTTTGGCGAAAC
AAGGGATTAACTTCAAAATGAGCACTAAAGTGACGGGTGCTACAGTGAAG
GATGATGGGGTCTCTCTCACCCTCGAGCCTGCTGCCGGTGGGGCTGCCGA
GACATTCGAAGCCGAGGTGGTGCTTGTGGCGATTGGTCGTCGGCCGTTCA
CCCGGAACATGGGGTTGGAGGAGCAGGGCATCGAGCTAGATAAGGCAGGG
AGGATCACGGTCGACAGTCATTTTAAAACTGTCATCCCGTCAATCCATGC
CATTGGAGACGCCATCGTCGGGCCAATGCTGGCGCACAAGGCGGAGGAGG
AGGGGATTGCGGTCGTGGAGATGATGAAGGGCCTCGCAGGCCATGTGAAT
TACGATGCGATCCCCGGGGTGATCTACACGCATCCCGAGGTTGCGGCTGC
GGGGAAGACGGAGGAGGAATTGAAGGCGCAGGGCGTGGCGTACAACAAAG
GGGTGTTTCCTTTCAGTGCGAATTCTCGGGCGAGAGCCGTGGGAGAGAGT
GATGGGATGGTGAAGATTCTGAGCGATAAAACAACGGATCGGATTTTGGG
AATTCATATTATTGGGTCCAATGCGGGGGAAATGATTGCGGAGGGAGTGT
TGGGGATGGAGTATGGAGCGTCGAGTGAGGACATTGCACGCACGTGCCAT
GCGCATCCGACCTTGTCGGAGGCGTTCAAGGAGGCGTGCATGGCCACGAG
CTCTAAGGCAATCCACTTTTAAGGAGAGGGGATATGCGAGGAGTAGTGGC
ATGTAAACAGGCGAGAGAGGTGTAGGGGATATACGAGGAGGAGAAGGGGG
TTGAGGAGGTCAGTAGGCAGAAGTAGGAAGGGAGGATAGGAATATAAGGG
GTTTCACGAGGGAAGGCAGATGTGTACCTGGAGCGAAAGAACGAGAAGAA
ATTTAGCGAAAACAGTTAAAACACAGTTGTCTCACCTGCTCGCCTTCT
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protein sequence of NO03G01760.1

>NO03G01760.1-protein ID=NO03G01760.1-protein|Name=NO03G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MLASRTLLRGGSRSRLTTSSQSIMAPASRTFAAAAAESQYELVVVGGGPG
GYVAAIKAAQLGMKTACVEVRGALGGTCLNVGCIPSKALLHSSHLFDQAN
HDFKKHGIKINGTIEVDLKTMMGGKEKAVRQLTGGIEYLFKKNGVDYVKG
FGKVAGPNSVHVKLNDGGESTLETKNILIATGSEVTPLPTCPVENEKGRI
VDSTGALVLKTVPKTMVVVGGGVIGLEMGSVWRRLGTKVTVVEFLDRICP
SLDNEIGQSFQKILAKQGINFKMSTKVTGATVKDDGVSLTLEPAAGGAAE
TFEAEVVLVAIGRRPFTRNMGLEEQGIELDKAGRITVDSHFKTVIPSIHA
IGDAIVGPMLAHKAEEEGIAVVEMMKGLAGHVNYDAIPGVIYTHPEVAAA
GKTEEELKAQGVAYNKGVFPFSANSRARAVGESDGMVKILSDKTTDRILG
IHIIGSNAGEMIAEGVLGMEYGASSEDIARTCHAHPTLSEAFKEACMATS
SKAIHF*
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mRNA from alignment at chr3:550596..552799+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01760.1 ID=NO03G01760.1|Name=NO03G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2204bp|location=Sequence derived from alignment at chr3:550596..552799+ (Nannochloropsis oceanica)
AAGCTCCATCGAATAGACGCAGAAATTAAATACCCCCGAAACTAAAATGA
ATGACGAGCGAGGTTACGCGTTCTTGCCGTAGCTGTCGAATGCATGCTGG
TGGTACGTGTGCATAGAAGTGGCAAATCACAAAGGCGGCGAAGGGAGCAT
CGCCGCCGCCAAACGACGACCGAGAAGCACCGCCCTCCTCCTTTGCATTT
CCCGCACGCGATGACAATCGTCAATCAAGTACACCAACAAATCACGCGAG
GAAAAGAAGGAGAAGCTAGTCAATGTGTAAGTGGGTCCCATCGTGTTTTT
AATGGCTCGCGTCCATGGTCAGCCAACGTAACCCCACGAACAAGTAGGCG
GCGGTTGCAGAGGCCAAAAAGCAACGACAAACGAAGCAAATGCACACGCT
CATCACCAGCATCACCCCACACGCATGCACAGGAACACACTAAGCGAGCA
CCCAAGGATGCTGGCATCACGCACATTGCTCCGAGGAGGCAGCAGGAGCA
GGCTCACGACCAGTAGCCAGAGCATCATGGCGCCCGCTAGTCGTACCTTT
GCGGCCGCCGCTGCGGAGTCCCAGTATGAATTAGTCGTGGTAGGAGGTGG
ACCCGGGGGCTACGTCGCCGCCATTAAAGCCGCACAACTGGGTATGAAGA
CAGCGTGTGTTGAGGTCCGTGGTGCGTTGGGCGGAACGTGCTTGAACGTG
GGATGCATCCCGTCCAAGGCGTTGCTGCACTCGTCGCATCTCTTTGATCA
GGCCAACCATGACTTCAAGAAGCATGGAATCAAGATTAATGGCACGATAG
AGGTGGACCTCAAGACAATGATGGGGGGTAAGGAGAAGGCGGTCCGTCAA
CTCACGGGGGGCATCGAGTATTTGTTCAAGAAGAACGGGGTGGATTACGT
GAAGGGGTTTGGAAAAGTCGCGGGGCCTAACAGTGTGCATGTCAAGCTGA
ACGATGGTGGGGAGAGCACGCTCGAGACCAAGAACATACTGATTGCCACG
GGCTCCGAGGTCACGCCGTTACCGACCTGCCCGGTGGAGAATGAAAAGGG
CCGCATAGTCGATTCCACAGGGGCGCTGGTGTTGAAAACGGTCCCCAAGA
CCATGGTGGTGGTGGGTGGTGGGGTGATCGGCCTCGAAATGGGCTCGGTG
TGGCGTCGCCTTGGCACGAAGGTGACGGTCGTCGAGTTTCTGGACCGAAT
CTGTCCTTCCCTCGACAATGAAATCGGACAGTCTTTCCAGAAGATTTTGG
CGAAACAAGGGATTAACTTCAAAATGAGCACTAAAGTGACGGGTGCTACA
GTGAAGGATGATGGGGTCTCTCTCACCCTCGAGCCTGCTGCCGGTGGGGC
TGCCGAGACATTCGAAGCCGAGGTGGTGCTTGTGGCGATTGGTCGTCGGC
CGTTCACCCGGAACATGGGGTTGGAGGAGCAGGGCATCGAGCTAGATAAG
GCAGGGAGGATCACGGTCGACAGTCATTTTAAAACTGTCATCCCGTCAAT
CCATGCCATTGGAGACGCCATCGTCGGGCCAATGCTGGCGCACAAGGCGG
AGGAGGAGGGGATTGCGGTCGTGGAGATGATGAAGGGCCTCGCAGGCCAT
GTGAATTACGATGCGATCCCCGGGGTGATCTACACGCATCCCGAGGTTGC
GGCTGCGGGGAAGACGGAGGAGGAATTGAAGGCGCAGGGCGTGGCGTACA
ACAAAGGGGTGTTTCCTTTCAGTGCGAATTCTCGGGCGAGAGCCGTGGGA
GAGAGTGATGGGATGGTGAAGATTCTGAGCGATAAAACAACGGATCGGAT
TTTGGGAATTCATATTATTGGGTCCAATGCGGGGGAAATGATTGCGGAGG
GAGTGTTGGGGATGGAGTATGGAGCGTCGAGTGAGGACATTGCACGCACG
TGCCATGCGCATCCGACCTTGTCGGAGGCGTTCAAGGAGGCGTGCATGGC
CACGAGCTCTAAGGCAATCCACTTTTAAGGAGAGGGGATATGCGAGGAGT
AGTGGCATGTAAACAGGCGAGAGAGGTGTAGGGGATATACGAGGAGGAGA
AGGGGGTTGAGGAGGTCAGTAGGCAGAAGTAGGAAGGGAGGATAGGAATA
TAAGGGGTTTCACGAGGGAAGGCAGATGTGTACCTGGAGCGAAAGAACGA
GAAGAAATTTAGCGAAAACAGTTAAAACACAGTTGTCTCACCTGCTCGCC
TTCT
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Coding sequence (CDS) from alignment at chr3:550596..552799+

>NO03G01760.1 ID=NO03G01760.1|Name=NO03G01760.1|organism=Nannochloropsis oceanica|type=CDS|length=1521bp|location=Sequence derived from alignment at chr3:550596..552799+ (Nannochloropsis oceanica)
ATGCTGGCATCACGCACATTGCTCCGAGGAGGCAGCAGGAGCAGGCTCAC
GACCAGTAGCCAGAGCATCATGGCGCCCGCTAGTCGTACCTTTGCGGCCG
CCGCTGCGGAGTCCCAGTATGAATTAGTCGTGGTAGGAGGTGGACCCGGG
GGCTACGTCGCCGCCATTAAAGCCGCACAACTGGGTATGAAGACAGCGTG
TGTTGAGGTCCGTGGTGCGTTGGGCGGAACGTGCTTGAACGTGGGATGCA
TCCCGTCCAAGGCGTTGCTGCACTCGTCGCATCTCTTTGATCAGGCCAAC
CATGACTTCAAGAAGCATGGAATCAAGATTAATGGCACGATAGAGGTGGA
CCTCAAGACAATGATGGGGGGTAAGGAGAAGGCGGTCCGTCAACTCACGG
GGGGCATCGAGTATTTGTTCAAGAAGAACGGGGTGGATTACGTGAAGGGG
TTTGGAAAAGTCGCGGGGCCTAACAGTGTGCATGTCAAGCTGAACGATGG
TGGGGAGAGCACGCTCGAGACCAAGAACATACTGATTGCCACGGGCTCCG
AGGTCACGCCGTTACCGACCTGCCCGGTGGAGAATGAAAAGGGCCGCATA
GTCGATTCCACAGGGGCGCTGGTGTTGAAAACGGTCCCCAAGACCATGGT
GGTGGTGGGTGGTGGGGTGATCGGCCTCGAAATGGGCTCGGTGTGGCGTC
GCCTTGGCACGAAGGTGACGGTCGTCGAGTTTCTGGACCGAATCTGTCCT
TCCCTCGACAATGAAATCGGACAGTCTTTCCAGAAGATTTTGGCGAAACA
AGGGATTAACTTCAAAATGAGCACTAAAGTGACGGGTGCTACAGTGAAGG
ATGATGGGGTCTCTCTCACCCTCGAGCCTGCTGCCGGTGGGGCTGCCGAG
ACATTCGAAGCCGAGGTGGTGCTTGTGGCGATTGGTCGTCGGCCGTTCAC
CCGGAACATGGGGTTGGAGGAGCAGGGCATCGAGCTAGATAAGGCAGGGA
GGATCACGGTCGACAGTCATTTTAAAACTGTCATCCCGTCAATCCATGCC
ATTGGAGACGCCATCGTCGGGCCAATGCTGGCGCACAAGGCGGAGGAGGA
GGGGATTGCGGTCGTGGAGATGATGAAGGGCCTCGCAGGCCATGTGAATT
ACGATGCGATCCCCGGGGTGATCTACACGCATCCCGAGGTTGCGGCTGCG
GGGAAGACGGAGGAGGAATTGAAGGCGCAGGGCGTGGCGTACAACAAAGG
GGTGTTTCCTTTCAGTGCGAATTCTCGGGCGAGAGCCGTGGGAGAGAGTG
ATGGGATGGTGAAGATTCTGAGCGATAAAACAACGGATCGGATTTTGGGA
ATTCATATTATTGGGTCCAATGCGGGGGAAATGATTGCGGAGGGAGTGTT
GGGGATGGAGTATGGAGCGTCGAGTGAGGACATTGCACGCACGTGCCATG
CGCATCCGACCTTGTCGGAGGCGTTCAAGGAGGCGTGCATGGCCACGAGC
TCTAAGGCAATCCACTTTTAA
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Synonyms
Publications