NO03G01570.1, NO03G01570.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G01570.1
Unique Name	NO03G01570.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1493
Alignment location	chr3:483948..486007 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:483948..486007 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G01570.1 vs.
Match: EWM29599.1 (phosphatidylinositol n-acetylglucosaminyltransferase subunit [Nannochloropsis gaditana])

HSP 1 Score: 438.0 bits (1125), Expect = 3.500e-119
Identity = 245/353 (69.41%), Postives = 273/353 (77.34%), Query Frame = 0

Query:   84 MALYARQPFPDNHVPDSFLDKLVTNAGISRPELRYIFLRATAVTQQISVVVVFLMAFLYSSENILPLPLLLATDAGLLLGGYLLAACIHPRRMLQLRTLLSTCGWITLCAACLRVIAPVLRTLTVSYSDDTIYALALVLSGLHLVFHDYGAAWSLSSSLFCSSSFSSPASFTVRATK---VAAGIEGNENDDEDEDKDISDVSQSSCQAKTATAEAAAVAILLTSPSQFHGTFSLNAALFAAVLLASRLESNEQVFGFVFLAIELFAFFPLARHLAHRRSTTLHLLVALGLVVAATSALAAAVEHRPLLVMYLIVVVFVSLVCPVWLQHIHQYKFTIQGPWDIASVEGTGGED 434
            MALY RQPFPDNHVPDSFLDKLVTN G+SRP+L  IFL ATAVTQQISVVV+FLMAF+YS    L LPL+LATDA LL+GGY LAAC+HPRRML   TLLST  W++LCAACLR++APVLRTLTVSYSDDTIYALAL+LSGLHLVF+DYGAAW  S S    S  S+ +S  +  ++   + A + GN                +  +A  A  E  A A LL SP+ FHGTFSLNAA FAAVLLASRLESNE+VFGFVFLAI+LFAFFPL  HLA RRS TLHLLVALGLV  AT ALA A EHR LLVMYL+ V FVS VCPVWLQHIH+YKFTIQGPWD+ASVEG GGED
Sbjct:    1 MALYIRQPFPDNHVPDSFLDKLVTNGGVSRPKLIPIFLGATAVTQQISVVVIFLMAFVYSYRKSLSLPLVLATDAVLLVGGYSLAACVHPRRMLCFHTLLSTILWVSLCAACLRIVAPVLRTLTVSYSDDTIYALALLLSGLHLVFYDYGAAWP-SQSSSSPSGLSADSSLDLNVSEGGGIGASVNGNR--------------PNLPEAGAARDEPGAAAALLASPAHFHGTFSLNAAFFAAVLLASRLESNEEVFGFVFLAIQLFAFFPLGHHLARRRSMTLHLLVALGLVATATCALAMAPEHRSLLVMYLMGVGFVSFVCPVWLQHIHKYKFTIQGPWDVASVEGAGGED 338

The following BLAST results are available for this feature:

BLAST of NO03G01570.1 vs.

BLAST of NO03G01570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29599.1	3.500e-119	69.41	phosphatidylinositol n-acetylglucosaminyltransfera...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G01570	NO03G01570	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G01570.1	NO03G01570.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G01570.1.cds1	NO03G01570.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G01570.1.cds2	NO03G01570.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G01570.1.cds3	NO03G01570.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G01570.1.cds4	NO03G01570.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G01570.1.cds5	NO03G01570.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:483948..486007-
coding sequence from alignment at chr3:483948..486007-

mRNA sequence

>NO03G01570.1 ID=NO03G01570.1|Name=NO03G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1493bp
AAGCACGGAGTGGGAAACCCCGAGTCGATAGAACGATGATCATCATCACA
CCCCAGCCCGCACTTGCTTTCTGTAACGTCGTTACATTCCCCCAAGCACA
GGTACACCAATGCCGGAATGGCACGTCCCTAACGACCACCACACTGTGCA
AGGCGAAATGGTTGAAAGTGTCATGACGACCACCAAAGACACATGCACAC
GGCAGCGTCTAAAGTCACCGCCGGTGGGACCTACGGGTGCCGGCAGTCTG
ATACACGCCCATTCCCCTCAACTTTATCATGGGCCACAACCACCACCATC
CCCGCGGCCCCCATCCCTATCAATCACCCCTGGCCGGTCTCCCGCCGTCA
AATGGAAGATGGCCTTGTACGCTCGACAGCCATTCCCCGATAACCACGTG
CCGGACAGCTTTTTGGATAAGCTTGTCACCAACGCTGGCATCTCGCGGCC
CGAGCTTCGGTATATTTTTTTGCGGGCCACAGCCGTCACGCAGCAAATCA
GCGTTGTGGTCGTATTCTTGATGGCCTTCCTCTACTCCTCCGAAAACATC
CTTCCCCTCCCCCTCCTCCTCGCCACCGACGCCGGCCTCCTTCTAGGCGG
TTACCTCCTGGCAGCCTGCATCCATCCCCGACGAATGCTACAGCTTCGTA
CCCTCCTCTCTACGTGCGGCTGGATCACGTTGTGTGCGGCTTGCTTGCGA
GTCATTGCGCCTGTGCTACGGACATTGACGGTGTCGTACTCTGACGACAC
TATCTATGCATTGGCTCTAGTTCTTTCAGGGTTGCATCTGGTATTTCACG
ACTATGGTGCTGCATGGTCTTTATCTTCGTCTTTGTTCTGTTCTTCCTCC
TTTTCCTCCCCCGCATCTTTTACGGTTCGAGCGACAAAGGTTGCTGCAGG
CATAGAAGGGAATGAAAATGACGACGAGGATGAGGACAAGGACATATCTG
ACGTCTCTCAAAGCTCATGTCAAGCAAAAACCGCAACTGCAGAAGCAGCA
GCAGTGGCCATCCTGCTCACCTCCCCATCTCAGTTCCACGGGACCTTTTC
CTTGAATGCCGCGCTGTTCGCCGCTGTGCTCCTTGCGTCCCGCTTGGAAA
GCAACGAGCAGGTCTTTGGATTTGTCTTTCTAGCCATCGAGCTGTTTGCC
TTCTTTCCACTCGCGCGACATTTGGCCCACCGACGATCCACGACTCTCCA
CCTCCTGGTGGCACTTGGGCTGGTTGTGGCGGCGACGAGCGCTTTGGCTG
CCGCGGTGGAGCATCGGCCGCTGTTGGTAATGTATTTGATTGTGGTGGTT
TTTGTGTCGTTGGTGTGCCCAGTGTGGTTACAACATATCCATCAATATAA
ATTTACGATCCAGGGTCCTTGGGATATTGCATCAGTGGAGGGCACCGGGG
GAGAAGATTCCTAGGTGAGCCGAAACTGTGTAAGATGCGGAAAGTGCAGT
TTGAAAATAGAGTAAAGAGATAGAAACAAATGTATATTGTAGG

protein sequence of NO03G01570.1

>NO03G01570.1-protein ID=NO03G01570.1-protein|Name=NO03G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MPEWHVPNDHHTVQGEMVESVMTTTKDTCTRQRLKSPPVGPTGAGSLIHA
HSPQLYHGPQPPPSPRPPSLSITPGRSPAVKWKMALYARQPFPDNHVPDS
FLDKLVTNAGISRPELRYIFLRATAVTQQISVVVVFLMAFLYSSENILPL
PLLLATDAGLLLGGYLLAACIHPRRMLQLRTLLSTCGWITLCAACLRVIA
PVLRTLTVSYSDDTIYALALVLSGLHLVFHDYGAAWSLSSSLFCSSSFSS
PASFTVRATKVAAGIEGNENDDEDEDKDISDVSQSSCQAKTATAEAAAVA
ILLTSPSQFHGTFSLNAALFAAVLLASRLESNEQVFGFVFLAIELFAFFP
LARHLAHRRSTTLHLLVALGLVVAATSALAAAVEHRPLLVMYLIVVVFVS
LVCPVWLQHIHQYKFTIQGPWDIASVEGTGGEDS*

mRNA from alignment at chr3:483948..486007-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G01570.1 ID=NO03G01570.1|Name=NO03G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=2060bp|location=Sequence derived from alignment at chr3:483948..486007- (Nannochloropsis oceanica)
AAGCACGGAGTGGGAAACCCCGAGTCGATAGAACGATGATCATCATCACA
CCCCAGCCCGCACTTGCTTTCTGTAACGTCGTTACATTCCCCCAAGCACA
GGTACACCAATGCCGGAATGGCACGTCCCTAACGACCACCACACTGTGCA
AGGCGAAATGGTACGTGCTTTGGGATGTGGCCTGAGCAGTACAAGCTTCC
TCCTAGCCTCACTCAGGCAGCCCAGAGTAATCGCTGAAGAGTCTGAGCGA
ACGCTCCTGCGGTCGTCGTTGTTGGCCACTCTTCCCACACGAAAATACTG
GGTCCATGATGCCTGAGGGCTGCTTTGTCACGCTGTTGTGGCCCTGATAG
GATGGTCCTGACCCAGGAGTGTCTCTTTTGCTGAACCTTGGTGTCCTTCC
CTCCCTCCCTCCGTCCCACCCTCAGGTTGAAAGTGTCATGACGACCACCA
AAGACACATGCACACGGCAGCGTCTAAAGTCACCGCCGGTGGGACCTACG
GGTGCCGGCAGTCTGGTAAGAACGGTGGTTGTCTATTTTACTGTTGGCCC
ATCTAGTCTTGTCCTTACCGGCGCGATCAACGTACCCACAGATACACGCC
CATTCCCCTCAACTTTATCATGGGCCACAACCACCACCATCCCCGCGGCC
CCCATCCCTATCAATCACCCCTGGCCGGTCTCCCGCCGTCAAATGGAAGA
TGGCCTTGTACGCTCGACAGCCATTCCCCGATAACCACGTGCCGGACAGC
TTTTTGGATAAGCTTGTCACCAACGGTATGTCCCGCGAAATCATGATTCC
GCTCGCTCTCTGTGCCACCTTCCCCAATGTCTCCAGCGCAACGGCGTCTG
ATTCTATGATCAACCAATCGAAAAAATCACCTCACTCTCTGCCCTCTATA
CGCAGCTGGCATCTCGCGGCCCGAGCTTCGGTATATTTTTTTGCGGGCCA
CAGCCGTCACGCAGCAAATCAGCGTTGTGGTCGTATTCTTGGTAAGTCTC
CACATTCCATCCCATCTCATCTCCTTCTTCCAATCCTCCCTATTCACAAT
CTCCTTTTCACTTCCTTTCCGCAATTTTTACATCTAGATGGCCTTCCTCT
ACTCCTCCGAAAACATCCTTCCCCTCCCCCTCCTCCTCGCCACCGACGCC
GGCCTCCTTCTAGGCGGTTACCTCCTGGCAGCCTGCATCCATCCCCGACG
AATGCTACAGCTTCGTACCCTCCTCTCTACGTGCGGCTGGATCACGTTGT
GTGCGGCTTGCTTGCGAGTCATTGCGCCTGTGCTACGGACATTGACGGTG
TCGTACTCTGACGACACTATCTATGCATTGGCTCTAGTTCTTTCAGGGTT
GCATCTGGTATTTCACGACTATGGTGCTGCATGGTCTTTATCTTCGTCTT
TGTTCTGTTCTTCCTCCTTTTCCTCCCCCGCATCTTTTACGGTTCGAGCG
ACAAAGGTTGCTGCAGGCATAGAAGGGAATGAAAATGACGACGAGGATGA
GGACAAGGACATATCTGACGTCTCTCAAAGCTCATGTCAAGCAAAAACCG
CAACTGCAGAAGCAGCAGCAGTGGCCATCCTGCTCACCTCCCCATCTCAG
TTCCACGGGACCTTTTCCTTGAATGCCGCGCTGTTCGCCGCTGTGCTCCT
TGCGTCCCGCTTGGAAAGCAACGAGCAGGTCTTTGGATTTGTCTTTCTAG
CCATCGAGCTGTTTGCCTTCTTTCCACTCGCGCGACATTTGGCCCACCGA
CGATCCACGACTCTCCACCTCCTGGTGGCACTTGGGCTGGTTGTGGCGGC
GACGAGCGCTTTGGCTGCCGCGGTGGAGCATCGGCCGCTGTTGGTAATGT
ATTTGATTGTGGTGGTTTTTGTGTCGTTGGTGTGCCCAGTGTGGTTACAA
CATATCCATCAATATAAATTTACGATCCAGGGTCCTTGGGATATTGCATC
AGTGGAGGGCACCGGGGGAGAAGATTCCTAGGTGAGCCGAAACTGTGTAA
GATGCGGAAAGTGCAGTTTGAAAATAGAGTAAAGAGATAGAAACAAATGT
ATATTGTAGG

Coding sequence (CDS) from alignment at chr3:483948..486007-

>NO03G01570.1 ID=NO03G01570.1|Name=NO03G01570.1|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at chr3:483948..486007- (Nannochloropsis oceanica)
ATGCCGGAATGGCACGTCCCTAACGACCACCACACTGTGCAAGGCGAAAT
GGTTGAAAGTGTCATGACGACCACCAAAGACACATGCACACGGCAGCGTC
TAAAGTCACCGCCGGTGGGACCTACGGGTGCCGGCAGTCTGATACACGCC
CATTCCCCTCAACTTTATCATGGGCCACAACCACCACCATCCCCGCGGCC
CCCATCCCTATCAATCACCCCTGGCCGGTCTCCCGCCGTCAAATGGAAGA
TGGCCTTGTACGCTCGACAGCCATTCCCCGATAACCACGTGCCGGACAGC
TTTTTGGATAAGCTTGTCACCAACGCTGGCATCTCGCGGCCCGAGCTTCG
GTATATTTTTTTGCGGGCCACAGCCGTCACGCAGCAAATCAGCGTTGTGG
TCGTATTCTTGATGGCCTTCCTCTACTCCTCCGAAAACATCCTTCCCCTC
CCCCTCCTCCTCGCCACCGACGCCGGCCTCCTTCTAGGCGGTTACCTCCT
GGCAGCCTGCATCCATCCCCGACGAATGCTACAGCTTCGTACCCTCCTCT
CTACGTGCGGCTGGATCACGTTGTGTGCGGCTTGCTTGCGAGTCATTGCG
CCTGTGCTACGGACATTGACGGTGTCGTACTCTGACGACACTATCTATGC
ATTGGCTCTAGTTCTTTCAGGGTTGCATCTGGTATTTCACGACTATGGTG
CTGCATGGTCTTTATCTTCGTCTTTGTTCTGTTCTTCCTCCTTTTCCTCC
CCCGCATCTTTTACGGTTCGAGCGACAAAGGTTGCTGCAGGCATAGAAGG
GAATGAAAATGACGACGAGGATGAGGACAAGGACATATCTGACGTCTCTC
AAAGCTCATGTCAAGCAAAAACCGCAACTGCAGAAGCAGCAGCAGTGGCC
ATCCTGCTCACCTCCCCATCTCAGTTCCACGGGACCTTTTCCTTGAATGC
CGCGCTGTTCGCCGCTGTGCTCCTTGCGTCCCGCTTGGAAAGCAACGAGC
AGGTCTTTGGATTTGTCTTTCTAGCCATCGAGCTGTTTGCCTTCTTTCCA
CTCGCGCGACATTTGGCCCACCGACGATCCACGACTCTCCACCTCCTGGT
GGCACTTGGGCTGGTTGTGGCGGCGACGAGCGCTTTGGCTGCCGCGGTGG
AGCATCGGCCGCTGTTGGTAATGTATTTGATTGTGGTGGTTTTTGTGTCG
TTGGTGTGCCCAGTGTGGTTACAACATATCCATCAATATAAATTTACGAT
CCAGGGTCCTTGGGATATTGCATCAGTGGAGGGCACCGGGGGAGAAGATT
CCTAG

Synonyms

Publications