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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:412924..416161 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G01310.1 vs.
Match: EWM29548.1 (hypothetical protein Naga_100006g69 [Nannochloropsis gaditana]) HSP 1 Score: 763.1 bits (1969), Expect = 6.000e-217 Identity = 382/547 (69.84%), Postives = 445/547 (81.35%), Query Frame = 0
Query: 3 PVAEDEQASIK-NSKEDANTNAVAIHDLD-----YDVPPEELTPISAIYYVSPGGRGLSEKEFFSSDPDASSDDDECTGQNSPSVLKENVSAPPERFSQRLATILVAGAGFLADSYDLFVINIVLIMMKQNESYGPLTPDVQTQCSFMAIIGAAVGQLLFGFLGDQYGRRRMFLLTAILTILGNILQASAQPRERLGIYQQMMLFRFIMGIGVGGEYPTASIITSENSSNWTRGRNLAAVFSMQGVGRLLCAVILLICAHTIEDTNIQWRVAVIVGALPMMIAVFYRWLPETAIFREQVQARYPNMRERFKVIWRTVWENRRALTGTAGSWFILDMLFYGNSLFSADVTARIGLEDSIRGLTVQNLIIQSMAMPGYILAVLFIDYIGKRRLQLIGFFGEGVIFAVMAVFHSRLKRTPQVFLVMYALTFLFDNFGANTSTFVIPAVIYPTEARSTCHGISAAFGKAGAVVGASVFLNIVTMHCPNHVCSEDVDSALVDRGIKTVFYWCAMLSLVGFLWTCVLVHDKRHRSLDCNGPLQAPATSPEYQM 544
P AE E S + D + + A+ +++ ++ P E +P S++ +V L+ KEFFSS ++ DD+ G S++ E A P+ QR+ TIL+AG GFLADSYDLFVINIVL+MM+QNESYGPLTPDVQT SFMAI+GA GQL FGFLGDQYGRRRMFLLTA LTI+GN+LQA+AQPR+ +GIYQQMML+RFIMG+GVGGEYP A ITSENS+ W RGRNLAAVFSMQGVGRLLCA++LLI A TIE+T++QWRVA+IVGALPMM A+F+RWLPET FR V+ARYPNMR RFK IWRTVWENRRAL GTAGSWFILDMLFYGNSLFSADVT +G IRG TVQNLIIQSMAMPGYILAV+FID IGK+RLQLIGFFGEG+IF MA + S LK+ P VFL+MYALTFLFDNFGANT+TFVIPAVIYPTEARSTCHGISAA GKAGAVVGAS FL +V+M+CPNH+CSE+VD AL+D+GI+TVFYWCA+LSLVGFLWTC+ VHD+ H+SLDC PL AP SPEY+M
Sbjct: 7 PTAEGEGKSPSLDETPDMDVASTAMQEIELPTTRHNSPLENASPGSSLCFVPGESCRLTSKEFFSSSDLGTTVDDDVNGDYLDSIIPEEKPAHPDELLQRIYTILIAGTGFLADSYDLFVINIVLLMMRQNESYGPLTPDVQTHVSFMAIVGAMAGQLGFGFLGDQYGRRRMFLLTAALTIVGNVLQATAQPRQSMGIYQQMMLYRFIMGMGVGGEYPAAGTITSENSTAWQRGRNLAAVFSMQGVGRLLCALVLLISAFTIENTDLQWRVAIIVGALPMMAAIFFRWLPETDAFRHHVEARYPNMRLRFKNIWRTVWENRRALAGTAGSWFILDMLFYGNSLFSADVTETMGFGSGIRGRTVQNLIIQSMAMPGYILAVIFIDRIGKKRLQLIGFFGEGLIFGFMAAYQSPLKQAPVVFLLMYALTFLFDNFGANTATFVIPAVIYPTEARSTCHGISAAAGKAGAVVGASAFLRLVSMYCPNHICSENVDPALIDKGIRTVFYWCAVLSLVGFLWTCIFVHDRSHKSLDCKAPLTAPVGSPEYEM 553
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G01310.1 ID=NO03G01310.1|Name=NO03G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=3091bp
CAGGATGTCTCCCGTTGCGGAAGATGAGCAGGCTTCAATTAAGAACTCAA
AGGAAGATGCCAACACTAACGCCGTAGCTATCCACGACCTTGACTACGAC
GTCCCCCCAGAGGAGCTTACACCAATCTCCGCAATATACTATGTCTCACC
CGGCGGGCGCGGACTGTCGGAGAAGGAGTTCTTCTCCTCCGATCCGGACG
CTAGCAGTGATGATGATGAGTGTACCGGGCAAAATAGCCCCAGTGTCCTC
AAGGAAAATGTATCAGCACCCCCTGAAAGATTCTCGCAGCGTCTCGCCAC
CATATTGGTTGCAGGTGCAGGTTTCTTGGCCGACTCCTACGACCTTTTCG
TCATCAATATTGTCTTGATTATGATGAAGCAAAACGAGAGCTACGGCCCC
TTGACACCGGACGTGCAGACCCAATGCTCGTTTATGGCCATCATTGGTGC
CGCCGTAGGCCAGCTTCTTTTCGGTTTTCTTGGGGATCAATACGGGCGTC
GTCGCATGTTCCTCCTTACGGCCATCCTGACCATTTTAGGGAATATTTTG
CAAGCAAGCGCTCAACCGCGCGAGCGCTTGGGGATATATCAACAGATGAT
GCTGTTTAGGTTTATCATGGGCATTGGGGTAGGGGGCGAATACCCGACCG
CCAGCATCATTACGAGCGAGAATTCCTCTAATTGGACCCGGGGACGGAAC
CTGGCCGCTGTCTTTTCTATGCAAGGCGTCGGTCGCTTGCTCTGCGCGGT
GATCCTTCTCATCTGTGCCCACACCATCGAGGACACAAACATACAGTGGC
GAGTAGCAGTGATTGTAGGGGCCTTACCAATGATGATTGCCGTGTTTTAT
CGATGGCTTCCTGAGACGGCCATCTTCCGCGAACAAGTCCAAGCCCGGTA
CCCGAATATGCGCGAGCGTTTTAAGGTCATCTGGAGGACCGTGTGGGAGA
ACCGTCGAGCTCTTACGGGCACCGCTGGTTCTTGGTTTATTTTGGATATG
TTGTTTTATGGCAATTCTCTTTTCTCGGCCGACGTGACGGCAAGGATAGG
CTTGGAGGATAGCATCAGAGGGCTCACTGTCCAGAACCTTATCATTCAAT
CCATGGCCATGCCCGGCTATATTCTCGCTGTCCTCTTTATCGACTACATC
GGCAAGAGACGTTTGCAGCTGATAGGGTTCTTTGGGGAGGGAGTGATTTT
TGCGGTCATGGCTGTGTTTCATTCCCGGCTTAAGCGGACTCCGCAAGTAT
TTTTGGTCATGTATGCCCTTACTTTCCTCTTTGATAATTTTGGGGCCAAT
ACTTCGACTTTCGTCATTCCTGCTGTAATTTACCCCACGGAAGCCCGCTC
GACCTGCCATGGGATCTCGGCGGCGTTTGGGAAAGCAGGGGCGGTGGTAG
GTGCGAGTGTATTTCTGAATATAGTGACAATGCACTGTCCCAATCACGTG
TGCAGCGAGGACGTGGATTCGGCGTTGGTAGACAGGGGTATCAAGACCGT
GTTTTATTGGTGCGCCATGCTCTCCCTTGTCGGCTTTCTGTGGACATGCG
TCTTGGTCCACGATAAACGCCACAGGTCGCTTGATTGCAACGGGCCGCTG
CAAGCGCCGGCCACTTCTCCCGAGTATCAAATGACTTGAGCGGCAGCAGA
TGCGAATAATTAAAGAATGGAGGAAATGTGAATACAAAGATGAAAGGGGA
ATAGAGCATAAACATGGTTCCCCGCAAGATCCGGGCACGACAAACAGCAG
CAGCAAAGAATGAAAACAAACAATCGCAGGAGAGGAAGGAACAAATATGT
TGCAATATAGCAGACGCAAAGTCGAAGATCGGAGCCAGTAAGTGAATTGT
ATCGGTGACATATTCGTGTCCTCAGTGCTCAAAAACACCGCAGCTTTCTC
GTCTTTTTTCAAATCCTTCCTCCCTCCTCCTCTATCTTTCCCTCCCCTCT
GTCCATCAATGGCGGCCTCCACATCATATACATGAACAAACCTACAAACG
GCACCACCTTGGCCACCGACGGTACAAGAATCTCCCCCAATGACCCGCTT
TTTTTTGCTCCCGTCCTCCTCATCATATCATCATCCACTAACCAACCCTG
AAACACCCAAAATAAGACCGCCTCCACACAAAAAGCAAACATCAGTCTAT
CCGTCGATGCCATCTCTATTAGACTCGCCCATCTCGCACTCAATCCTCCA
AACTCCGGGCGCGCGAAGAACCCCCACCACACACTATACAAGCCCGCGAG
CCCATAAACCGCTAATAGCTTCTTCGCTTCTCCCAGCTGTAACTCAACTT
GGGGCACGTCCTCCTTCCTAACGCACGTTTCGTCTTTCTTGTGCAATGGA
CGAAGGACAAGATAAGGAAGGAACGCAGTGTTGGTCAGTGCCAAGCCAGC
TGCCGCGAAAGGCAAGAAGAAGTTGACGTTGCTGCTCCTGCTGCCTGCCT
TCCGTCCATCCACCAGAAAGCCGCTTAATAAAGCCGCGTATGCCAGCAGC
AGATTAAATACCCCTTCCATTACAGGAGAAAATTTCGGGGCAATGCTGGG
GAGGAGAGTAGGGAGGATGCAGAAGTAGTTGAGAGTCAACCCCCCCACTT
GCTTGAGGACCGCTGGGTCGAGCATGTTGGGTACGGGCCCCGGGGCGAAT
GGCGAAATGAAGACGTACCCTACAAATGAAATGAGTGTGATGAGAGGTAT
TATGCGCTGGATAGGCTGTTGAATGAGTTTTTCCTTGAGGCTGGCCAGGC
TGACTTCGGCGGCCCACTCGGTGAGGGCGGAGGGGGGAGGGGAAGAGGGA
GGAGCACTAGGACGCAATACATCTTTCATTTGGAGCCTGCCGGAGGAGCG
GTTGTTGTCGTTGTTGCTGCTGAACAAGGCCAAGGCAAGTTTTCGGCTGC
CTTGCTGGGCGCGGATCGGTTGGTGCACGGCGCTCTTGTGGAAGGCATCG
GTTCTGGAGACATGAAAGCATGGGGGATGAGTAGAGGAGGTTGTGGCAGC
GGCAACAAGGACGACTAGCAATAAGGTCATGGCATTGCTGCGGGCTTGGA
ACCTCAAGGTCCTCATGCTGTATTTCTGGAAAAGCCTGTGG back to topprotein sequence of NO03G01310.1 >NO03G01310.1-protein ID=NO03G01310.1-protein|Name=NO03G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=545bp
MSPVAEDEQASIKNSKEDANTNAVAIHDLDYDVPPEELTPISAIYYVSPG
GRGLSEKEFFSSDPDASSDDDECTGQNSPSVLKENVSAPPERFSQRLATI
LVAGAGFLADSYDLFVINIVLIMMKQNESYGPLTPDVQTQCSFMAIIGAA
VGQLLFGFLGDQYGRRRMFLLTAILTILGNILQASAQPRERLGIYQQMML
FRFIMGIGVGGEYPTASIITSENSSNWTRGRNLAAVFSMQGVGRLLCAVI
LLICAHTIEDTNIQWRVAVIVGALPMMIAVFYRWLPETAIFREQVQARYP
NMRERFKVIWRTVWENRRALTGTAGSWFILDMLFYGNSLFSADVTARIGL
EDSIRGLTVQNLIIQSMAMPGYILAVLFIDYIGKRRLQLIGFFGEGVIFA
VMAVFHSRLKRTPQVFLVMYALTFLFDNFGANTSTFVIPAVIYPTEARST
CHGISAAFGKAGAVVGASVFLNIVTMHCPNHVCSEDVDSALVDRGIKTVF
YWCAMLSLVGFLWTCVLVHDKRHRSLDCNGPLQAPATSPEYQMT* back to topmRNA from alignment at chr3:412924..416161+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G01310.1 ID=NO03G01310.1|Name=NO03G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=3238bp|location=Sequence derived from alignment at chr3:412924..416161+ (Nannochloropsis oceanica)
CAGGATGTCTCCCGTTGCGGAAGATGAGCAGGCTTCAATTAAGAACTCAA
AGGAAGATGCCAACACTAACGCCGTAGCTATCCACGACCTTGACTACGAC
GTCCCCCCAGAGGAGCTTACACCAATCTCCGCAATATACTATGTCTCACC
CGGCGGGCGCGGACTGTCGGAGAAGGAGTTCTTCTCCTCCGATCCGGACG
CTAGCAGTGATGATGATGAGTGTACCGGGCAAAATAGCCCCAGTGTCCTC
AAGGAAAATGTATCAGCACCCCCTGAAAGATTCTCGCAGCGTCTCGCCAC
CATATTGGTTGCAGGTGCAGGTTTCTTGGCCGACTCCTACGACCTTTTCG
TCATCAATATTGTCTTGATTATGATGAAGCAAAACGAGAGCTACGGCCCC
TTGACACCGGACGTGCAGACCCAATGCTCGTTTATGGCCATCATTGGTGC
CGCCGTAGGCCAGCTTCTTTTCGGTTTTCTTGGGGATCAATACGGGCGTC
GTCGCATGTTCCTCCTTACGGCCATCCTGACCATTTTAGGGAATATTTTG
CAAGCAAGCGCTCAACCGCGCGAGCGCTTGGGGATATATCAACAGATGAT
GCTGTTTAGGTTTATCATGGGCATTGGGGTAGGGGGCGAATACCCGACCG
CCAGCATCATTACGAGCGAGAATTCCTCTAATTGGACCCGGGGACGGAAC
CTGGCCGCTGTCTTTTCTATGCAAGGCGTCGGTCGCTTGCTCTGCGCGGT
GATCCTTCTCATCTGTGCCCACACCATCGAGGACACAAACATACAGTGGC
GAGTAGCAGTGATTGTAGGGGCCTTACCAATGATGATTGCCGTGTTTTAT
CGATGGCTTCCTGAGACGGCCATCTTCCGCGAACAAGTCCAAGCCCGGTA
CCCGAATATGCGCGAGCGTTTTAAGGTCATCTGGAGGACCGTGTGGGAGA
ACCGTCGAGCTCTTACGGGCACCGCTGGTTCTTGGTTTATTTTGGATATG
TTGTTTTATGGCAATTCTCTTTTCTCGGCCGACGTGACGGCAAGGATAGG
CTTGGAGGATAGCATCAGAGGGCTCACTGTCCAGAACCTTATCATTCAAT
CCATGGCCATGCCCGGCTATATTCTCGCTGTCCTCTTTATCGACTACATC
GGCAAGAGACGTTTGCAGCTGATAGGGTTCTTTGGGGAGGGAGTGATTTT
TGCGGTCATGGCTGTGTTTCATTCCCGGCTTAAGCGGACTCCGCAAGTAT
TTTTGGTCATGTATGCCCTTACTTTCCTCTTTGATAATTTTGGGGCCAAT
ACTTCGACTTTCGTCATTCCTGCTGTAATTTACCCCACGGAAGCCCGCTC
GACCTGCCATGGGATCTCGGCGGCGTTTGGGAAAGCAGGGGCGGTGGTAG
GTGCGAGTGTATTTCTGAATATAGTGACAATGCACTGTCCCAATCACGTG
TGCAGCGAGGACGTGGATTCGGCGTTGGTAGACAGGGGTATCAAGACCGT
GTTTTATTGGTATGTAATATTTGACGGGGTCGTGAGAATTTCGCTAACTT
TCTTTTGAATGGTAGATCCTCCATTAATTGCGTATCTATAATTCGAAGTA
AAGCATGTTTCCTGATCCCTCCCCATTTCCCTCCCTGCTCTTATTGTTTC
CACCAGGTGCGCCATGCTCTCCCTTGTCGGCTTTCTGTGGACATGCGTCT
TGGTCCACGATAAACGCCACAGGTCGCTTGATTGCAACGGGCCGCTGCAA
GCGCCGGCCACTTCTCCCGAGTATCAAATGACTTGAGCGGCAGCAGATGC
GAATAATTAAAGAATGGAGGAAATGTGAATACAAAGATGAAAGGGGAATA
GAGCATAAACATGGTTCCCCGCAAGATCCGGGCACGACAAACAGCAGCAG
CAAAGAATGAAAACAAACAATCGCAGGAGAGGAAGGAACAAATATGTTGC
AATATAGCAGACGCAAAGTCGAAGATCGGAGCCAGTAAGTGAATTGTATC
GGTGACATATTCGTGTCCTCAGTGCTCAAAAACACCGCAGCTTTCTCGTC
TTTTTTCAAATCCTTCCTCCCTCCTCCTCTATCTTTCCCTCCCCTCTGTC
CATCAATGGCGGCCTCCACATCATATACATGAACAAACCTACAAACGGCA
CCACCTTGGCCACCGACGGTACAAGAATCTCCCCCAATGACCCGCTTTTT
TTTGCTCCCGTCCTCCTCATCATATCATCATCCACTAACCAACCCTGAAA
CACCCAAAATAAGACCGCCTCCACACAAAAAGCAAACATCAGTCTATCCG
TCGATGCCATCTCTATTAGACTCGCCCATCTCGCACTCAATCCTCCAAAC
TCCGGGCGCGCGAAGAACCCCCACCACACACTATACAAGCCCGCGAGCCC
ATAAACCGCTAATAGCTTCTTCGCTTCTCCCAGCTGTAACTCAACTTGGG
GCACGTCCTCCTTCCTAACGCACGTTTCGTCTTTCTTGTGCAATGGACGA
AGGACAAGATAAGGAAGGAACGCAGTGTTGGTCAGTGCCAAGCCAGCTGC
CGCGAAAGGCAAGAAGAAGTTGACGTTGCTGCTCCTGCTGCCTGCCTTCC
GTCCATCCACCAGAAAGCCGCTTAATAAAGCCGCGTATGCCAGCAGCAGA
TTAAATACCCCTTCCATTACAGGAGAAAATTTCGGGGCAATGCTGGGGAG
GAGAGTAGGGAGGATGCAGAAGTAGTTGAGAGTCAACCCCCCCACTTGCT
TGAGGACCGCTGGGTCGAGCATGTTGGGTACGGGCCCCGGGGCGAATGGC
GAAATGAAGACGTACCCTACAAATGAAATGAGTGTGATGAGAGGTATTAT
GCGCTGGATAGGCTGTTGAATGAGTTTTTCCTTGAGGCTGGCCAGGCTGA
CTTCGGCGGCCCACTCGGTGAGGGCGGAGGGGGGAGGGGAAGAGGGAGGA
GCACTAGGACGCAATACATCTTTCATTTGGAGCCTGCCGGAGGAGCGGTT
GTTGTCGTTGTTGCTGCTGAACAAGGCCAAGGCAAGTTTTCGGCTGCCTT
GCTGGGCGCGGATCGGTTGGTGCACGGCGCTCTTGTGGAAGGCATCGGTT
CTGGAGACATGAAAGCATGGGGGATGAGTAGAGGAGGTTGTGGCAGCGGC
AACAAGGACGACTAGCAATAAGGTCATGGCATTGCTGCGGGCTTGGAACC
TCAAGGTCCTCATGCTGTATTTCTGGAAAAGCCTGTGG back to topCoding sequence (CDS) from alignment at chr3:412924..416161+ >NO03G01310.1 ID=NO03G01310.1|Name=NO03G01310.1|organism=Nannochloropsis oceanica|type=CDS|length=1635bp|location=Sequence derived from alignment at chr3:412924..416161+ (Nannochloropsis oceanica)
ATGTCTCCCGTTGCGGAAGATGAGCAGGCTTCAATTAAGAACTCAAAGGA
AGATGCCAACACTAACGCCGTAGCTATCCACGACCTTGACTACGACGTCC
CCCCAGAGGAGCTTACACCAATCTCCGCAATATACTATGTCTCACCCGGC
GGGCGCGGACTGTCGGAGAAGGAGTTCTTCTCCTCCGATCCGGACGCTAG
CAGTGATGATGATGAGTGTACCGGGCAAAATAGCCCCAGTGTCCTCAAGG
AAAATGTATCAGCACCCCCTGAAAGATTCTCGCAGCGTCTCGCCACCATA
TTGGTTGCAGGTGCAGGTTTCTTGGCCGACTCCTACGACCTTTTCGTCAT
CAATATTGTCTTGATTATGATGAAGCAAAACGAGAGCTACGGCCCCTTGA
CACCGGACGTGCAGACCCAATGCTCGTTTATGGCCATCATTGGTGCCGCC
GTAGGCCAGCTTCTTTTCGGTTTTCTTGGGGATCAATACGGGCGTCGTCG
CATGTTCCTCCTTACGGCCATCCTGACCATTTTAGGGAATATTTTGCAAG
CAAGCGCTCAACCGCGCGAGCGCTTGGGGATATATCAACAGATGATGCTG
TTTAGGTTTATCATGGGCATTGGGGTAGGGGGCGAATACCCGACCGCCAG
CATCATTACGAGCGAGAATTCCTCTAATTGGACCCGGGGACGGAACCTGG
CCGCTGTCTTTTCTATGCAAGGCGTCGGTCGCTTGCTCTGCGCGGTGATC
CTTCTCATCTGTGCCCACACCATCGAGGACACAAACATACAGTGGCGAGT
AGCAGTGATTGTAGGGGCCTTACCAATGATGATTGCCGTGTTTTATCGAT
GGCTTCCTGAGACGGCCATCTTCCGCGAACAAGTCCAAGCCCGGTACCCG
AATATGCGCGAGCGTTTTAAGGTCATCTGGAGGACCGTGTGGGAGAACCG
TCGAGCTCTTACGGGCACCGCTGGTTCTTGGTTTATTTTGGATATGTTGT
TTTATGGCAATTCTCTTTTCTCGGCCGACGTGACGGCAAGGATAGGCTTG
GAGGATAGCATCAGAGGGCTCACTGTCCAGAACCTTATCATTCAATCCAT
GGCCATGCCCGGCTATATTCTCGCTGTCCTCTTTATCGACTACATCGGCA
AGAGACGTTTGCAGCTGATAGGGTTCTTTGGGGAGGGAGTGATTTTTGCG
GTCATGGCTGTGTTTCATTCCCGGCTTAAGCGGACTCCGCAAGTATTTTT
GGTCATGTATGCCCTTACTTTCCTCTTTGATAATTTTGGGGCCAATACTT
CGACTTTCGTCATTCCTGCTGTAATTTACCCCACGGAAGCCCGCTCGACC
TGCCATGGGATCTCGGCGGCGTTTGGGAAAGCAGGGGCGGTGGTAGGTGC
GAGTGTATTTCTGAATATAGTGACAATGCACTGTCCCAATCACGTGTGCA
GCGAGGACGTGGATTCGGCGTTGGTAGACAGGGGTATCAAGACCGTGTTT
TATTGGTGCGCCATGCTCTCCCTTGTCGGCTTTCTGTGGACATGCGTCTT
GGTCCACGATAAACGCCACAGGTCGCTTGATTGCAACGGGCCGCTGCAAG
CGCCGGCCACTTCTCCCGAGTATCAAATGACTTGA back to top
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