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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:394275..396892 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G01270.1 vs.
Match: EWM29543.1 (delta-1-pyrroline-5-carboxylate synthetase [Nannochloropsis gaditana]) HSP 1 Score: 1143.3 bits (2956), Expect = 0.000e+0 Identity = 603/778 (77.51%), Postives = 681/778 (87.53%), Query Frame = 0
Query: 1 MAAEIRELLKGSQRVVIKAGTSVVSTPEGYPSLVRLANIVEQICTLKNEGRDVLLVTSGSVGIGRQLLSKQKRLSLSVRDVVSGIPNTTEAEEDGYDSACAAAGQLGLMSLYDTLFSTRQVASSQILVTGYDFTCADRREHIQYCVNSLLKLGIVPIINENDAVSGNEGYTESTVFSDNDSLAALVASEVQAELLILLTDVGGVYDKPPSDPDAKHVGIFRHESCPDIGAKSAQGRGGMQAKIAASMMAAREGVDHVVIASGHEMGVIAKIASGENTGTLFCRGLLYPPEDDLMTSTDSVQSAYGSGGGDSNDDVMPARAMST---NGLLEGLLAAEADGGVRGQAEAAREGQRSLASLTGAERSTILRAVAAGLLESTKDILAANERDLVAARDSELAGPLLSRLELSEGKIKTLAEGITALADMEEPLGRIISRMEVAYGLELTQLTVPIGVLLVVFESRPDSLPQIAALALRSGNGLLLKGGKEALHSNQVLHRVITEAMTTASQGVVPAETIGLVTSRAEVSGLLELDDVIDLVIPRGSSALVRSIKSQTRIPVLGHAEGVCHIYVDQAADVTKACRIVVDAKTDYPAACNAVETLLLHRSFVADGAIAASKILRALMSAGVTVLGGPEAVKEGLVSPGHAAKDMKQEYGELTITVEVVPDVHAAVDHIHKYGSSHTEAIITEDQATAEYFLKSIDSACVFHNASTRFADGYRFGLGAEVGISTGRIHARGPVGVEGLLTTKWLMQSAGSHTVADFAPGGGEVYVHRKLPLIEG 776
MA E+R L+ +QRVVIKAGTSVVSTPEGYPSLVRLA+IVEQIC L EGRDVLLVTSG+VGIG+QLL+KQ+R+SLSVRDVVSG P + +GYDSACAAAGQLGLMSLY+TLFSTRQ+A+SQILVTGYDFTC+DRREH+QYCVNSLL+LGIVPIINENDAVSGNEGYTESTVFSDNDSLA+LVA E QA+LLILLTDV GVYDKPPSD DAK +G++ + P IG KSAQGRGGMQAKI A+ AA+ GV+HVVIASGHE VI KIA GENTGTLFCR L+PPE+D+ ST S+ G+G G P S+ + LLE +LA EA+GG+RGQA A +E QR+LASLTG ERS IL AVA LL +T +ILAAN++DL AAR+S+LA PLL+RL L++ K+ TLA+GI ALA+MEEP+GR++SRMEVA GLELTQ TVPIGVLL+VFESRPDSLPQIAALALRSGNGLLLKGGKEALHSNQVLHRVIT+AMTTAS+G VPAE IGLVT+R+EVS LLELDDVIDLVIPRGSSALVRSIKS TRIPVLGHAEGVCHIYVD+ AD+ KA RIVVDAKTDYPAACNAVETLLLHRSFVADGAI ASK+LRALMSAGVTVLGGPEAVKEGLVSPGHAAKD++QEYG+LTITVEVV D+ A+ HIHK+GSSHT+AIITED AE FL+S+DSACVFHNAS+RFADGYRFGLGAEVGISTGRIHARGPVGVEGLLTTKWL++S+GSHTVADFA GG +VY H+KLPL++G
Sbjct: 1 MAEELRLRLRDAQRVVIKAGTSVVSTPEGYPSLVRLAHIVEQICLLIKEGRDVLLVTSGAVGIGQQLLAKQQRMSLSVRDVVSGHPPIKKP--NGYDSACAAAGQLGLMSLYETLFSTRQIATSQILVTGYDFTCSDRREHVQYCVNSLLQLGIVPIINENDAVSGNEGYTESTVFSDNDSLASLVAQETQADLLILLTDVCGVYDKPPSDEDAKQLGLYLRDCSPGIGEKSAQGRGGMQAKIDAATAAAKGGVEHVVIASGHEAEVIGKIARGENTGTLFCRAALFPPEEDMSASTGSLVGLNGNGDG-------PGTVCSSGPPDELLEDILALEAEGGIRGQALATKEAQRALASLTGNERSQILLAVADALLANTAEILAANDKDLEAARESDLAEPLLNRLGLTKEKLMTLADGIRALANMEEPVGRLVSRMEVAAGLELTQTTVPIGVLLIVFESRPDSLPQIAALALRSGNGLLLKGGKEALHSNQVLHRVITDAMTTASEGRVPAEAIGLVTTRSEVSALLELDDVIDLVIPRGSSALVRSIKSSTRIPVLGHAEGVCHIYVDKGADLRKAARIVVDAKTDYPAACNAVETLLLHRSFVADGAIGASKLLRALMSAGVTVLGGPEAVKEGLVSPGHAAKDLRQEYGDLTITVEVVADMEEAIAHIHKFGSSHTDAIITEDPVCAEEFLRSVDSACVFHNASSRFADGYRFGLGAEVGISTGRIHARGPVGVEGLLTTKWLLRSSGSHTVADFAEGGDKVYTHQKLPLLDG 769
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G01270.1 ID=NO03G01270.1|Name=NO03G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2331bp ATGGCGGCAGAGATACGGGAACTGCTGAAGGGCTCGCAGCGTGTTGTCAT CAAGGCTGGGACCTCCGTCGTCTCTACTCCCGAAGGCTATCCCTCCCTTG TGCGGTTGGCCAACATTGTGGAGCAGATCTGCACCCTAAAAAATGAGGGG CGGGATGTCCTCCTCGTCACCAGCGGGTCCGTAGGCATTGGCCGGCAACT TCTCTCGAAGCAAAAACGCCTCTCCCTCTCTGTCCGTGACGTTGTCAGTG GTATCCCAAACACAACAGAAGCCGAAGAAGACGGGTACGACAGTGCGTGT GCGGCAGCTGGGCAATTAGGGCTCATGTCTTTGTATGACACCCTTTTTTC CACCCGACAAGTCGCTTCCTCCCAGATCCTTGTCACCGGCTACGACTTTA CGTGTGCTGATCGGCGGGAGCATATTCAGTACTGTGTAAATTCCCTTCTT AAGCTTGGTATCGTCCCTATCATCAATGAAAATGACGCTGTATCAGGTAA TGAAGGCTACACGGAATCTACCGTCTTCTCCGACAACGACTCTCTCGCCG CGCTAGTCGCCAGCGAGGTGCAAGCCGAACTTCTCATTCTTCTGACGGAC GTGGGGGGGGTATATGATAAGCCACCGAGTGATCCCGACGCCAAGCATGT CGGAATCTTCCGGCACGAATCCTGCCCCGACATTGGCGCTAAGTCCGCAC AAGGCCGAGGAGGGATGCAAGCGAAGATTGCCGCGTCCATGATGGCGGCC AGGGAAGGTGTCGACCATGTTGTGATTGCAAGTGGGCATGAAATGGGTGT GATAGCAAAGATTGCCTCGGGGGAGAACACGGGGACATTGTTTTGTCGCG GCCTGTTGTATCCGCCCGAGGACGATTTAATGACATCCACGGACTCTGTG CAATCCGCGTATGGAAGCGGAGGGGGAGACAGTAATGATGATGTTATGCC GGCGCGTGCAATGAGCACCAATGGCTTGCTCGAGGGACTGCTGGCCGCAG AGGCTGATGGGGGGGTGCGTGGACAGGCTGAGGCGGCGAGGGAGGGACAG CGGTCGTTGGCAAGTCTGACGGGAGCAGAGAGGTCCACAATTCTTCGTGC CGTGGCGGCGGGCCTGCTTGAGAGCACCAAGGACATTCTCGCGGCGAATG AGAGAGATTTGGTGGCTGCGCGGGATTCGGAGTTGGCGGGCCCGTTGCTA TCTAGGCTGGAGCTGAGTGAGGGGAAAATCAAGACCCTGGCCGAGGGAAT TACGGCCTTGGCGGATATGGAGGAGCCGTTGGGGAGGATTATATCCCGAA TGGAGGTTGCGTATGGCTTGGAGTTGACGCAGTTGACCGTACCGATTGGT GTGCTCCTAGTCGTGTTTGAGTCGCGCCCGGACTCCTTGCCGCAGATTGC AGCCTTGGCGTTGCGAAGTGGGAACGGATTGTTGTTGAAGGGTGGCAAGG AAGCATTGCATTCCAATCAAGTCCTCCATCGCGTAATCACGGAAGCCATG ACCACTGCCTCTCAAGGTGTCGTCCCCGCCGAGACCATCGGCCTTGTCAC TTCCCGTGCGGAGGTCTCGGGCTTGTTAGAACTGGACGATGTCATCGATC TAGTCATCCCCAGGGGCTCCTCCGCCCTTGTCCGGAGCATCAAATCTCAG ACCCGAATCCCTGTCTTGGGGCATGCCGAAGGTGTGTGTCACATTTACGT CGACCAGGCAGCGGACGTGACCAAAGCTTGCCGTATCGTGGTCGATGCCA AAACGGACTACCCCGCGGCCTGCAACGCCGTCGAGACGCTTCTGCTTCAC CGATCCTTCGTAGCGGATGGTGCTATTGCGGCAAGCAAAATCTTGCGCGC GCTTATGTCTGCAGGCGTAACGGTGTTGGGCGGGCCCGAGGCAGTGAAGG AGGGTTTGGTATCCCCAGGCCACGCAGCTAAGGACATGAAGCAAGAGTAC GGGGAGCTGACTATCACGGTTGAAGTCGTCCCGGATGTACACGCAGCAGT AGACCATATTCACAAGTATGGGAGCTCTCACACCGAGGCTATCATCACCG AAGATCAAGCAACTGCAGAATACTTCCTCAAGAGCATTGATTCGGCCTGT GTCTTCCACAATGCCAGCACGCGTTTTGCAGACGGGTACCGGTTTGGATT GGGCGCAGAGGTTGGGATTAGTACCGGGAGGATTCATGCGCGAGGACCTG TGGGTGTAGAGGGACTGTTGACGACCAAGTGGCTTATGCAGTCGGCCGGG AGTCACACGGTGGCGGACTTTGCGCCGGGTGGGGGGGAGGTTTATGTGCA TCGAAAGTTACCTTTGATCGAGGGAAAGTAA back to topprotein sequence of NO03G01270.1 >NO03G01270.1-protein ID=NO03G01270.1-protein|Name=NO03G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=777bp MAAEIRELLKGSQRVVIKAGTSVVSTPEGYPSLVRLANIVEQICTLKNEG RDVLLVTSGSVGIGRQLLSKQKRLSLSVRDVVSGIPNTTEAEEDGYDSAC AAAGQLGLMSLYDTLFSTRQVASSQILVTGYDFTCADRREHIQYCVNSLL KLGIVPIINENDAVSGNEGYTESTVFSDNDSLAALVASEVQAELLILLTD VGGVYDKPPSDPDAKHVGIFRHESCPDIGAKSAQGRGGMQAKIAASMMAA REGVDHVVIASGHEMGVIAKIASGENTGTLFCRGLLYPPEDDLMTSTDSV QSAYGSGGGDSNDDVMPARAMSTNGLLEGLLAAEADGGVRGQAEAAREGQ RSLASLTGAERSTILRAVAAGLLESTKDILAANERDLVAARDSELAGPLL SRLELSEGKIKTLAEGITALADMEEPLGRIISRMEVAYGLELTQLTVPIG VLLVVFESRPDSLPQIAALALRSGNGLLLKGGKEALHSNQVLHRVITEAM TTASQGVVPAETIGLVTSRAEVSGLLELDDVIDLVIPRGSSALVRSIKSQ TRIPVLGHAEGVCHIYVDQAADVTKACRIVVDAKTDYPAACNAVETLLLH RSFVADGAIAASKILRALMSAGVTVLGGPEAVKEGLVSPGHAAKDMKQEY GELTITVEVVPDVHAAVDHIHKYGSSHTEAIITEDQATAEYFLKSIDSAC VFHNASTRFADGYRFGLGAEVGISTGRIHARGPVGVEGLLTTKWLMQSAG SHTVADFAPGGGEVYVHRKLPLIEGK* back to topmRNA from alignment at chr3:394275..396892+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G01270.1 ID=NO03G01270.1|Name=NO03G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2618bp|location=Sequence derived from alignment at chr3:394275..396892+ (Nannochloropsis oceanica) ATGGCGGCAGAGATACGGGAACTGCTGAAGGGCTCGCAGCGTGTTGTCAT
CAAGGCTGGGACCTCCGTCGTCTCTACTCCCGAAGGCTATCCCTCCCTTG
TGCGGTTGGCCAACATTGTGGAGCAGGTAAGCCACAAGATTTGTGAAAAT
GGTTTTACGACGGATGTACGGGCGTTTGTCTTCTCCTCCTTTTACTTCGG
GAAGGACAGTGTTACAGGCACATTTGTGTTTCAGGTCATGAGTAGGGGAG
GATGTGGCTCCTCCACCTCGTTTTTCCGCCTCCAATGATGATTTCTTCCA
ACACCCACTTACATAGTAGTGATCAAAACACACTTTGAAATTCACTTGCG
GGTGACATTTATCTCTGTCGAAGTCTAACACGCATCCCTTTTTTTCACCC
TTCCTGCATCAAGATCTGCACCCTAAAAAATGAGGGGCGGGATGTCCTCC
TCGTCACCAGCGGGTCCGTAGGCATTGGCCGGCAACTTCTCTCGAAGCAA
AAACGCCTCTCCCTCTCTGTCCGTGACGTTGTCAGTGGTATCCCAAACAC
AACAGAAGCCGAAGAAGACGGGTACGACAGTGCGTGTGCGGCAGCTGGGC
AATTAGGGCTCATGTCTTTGTATGACACCCTTTTTTCCACCCGACAAGTC
GCTTCCTCCCAGATCCTTGTCACCGGCTACGACTTTACGTGTGCTGATCG
GCGGGAGCATATTCAGTACTGTGTAAATTCCCTTCTTAAGCTTGGTATCG
TCCCTATCATCAATGAAAATGACGCTGTATCAGGTAATGAAGGCTACACG
GAATCTACCGTCTTCTCCGACAACGACTCTCTCGCCGCGCTAGTCGCCAG
CGAGGTGCAAGCCGAACTTCTCATTCTTCTGACGGACGTGGGGGGGGTAT
ATGATAAGCCACCGAGTGATCCCGACGCCAAGCATGTCGGAATCTTCCGG
CACGAATCCTGCCCCGACATTGGCGCTAAGTCCGCACAAGGCCGAGGAGG
GATGCAAGCGAAGATTGCCGCGTCCATGATGGCGGCCAGGGAAGGTGTCG
ACCATGTTGTGATTGCAAGTGGGCATGAAATGGGTGTGATAGCAAAGATT
GCCTCGGGGGAGAACACGGGGACATTGTTTTGTCGCGGCCTGTTGTATCC
GCCCGAGGACGATTTAATGACATCCACGGACTCTGTGCAATCCGCGTATG
GAAGCGGAGGGGGAGACAGTAATGATGATGTTATGCCGGCGCGTGCAATG
AGCACCAATGGCTTGCTCGAGGGACTGCTGGCCGCAGAGGCTGATGGGGG
GGTGCGTGGACAGGCTGAGGCGGCGAGGGAGGGACAGCGGTCGTTGGCAA
GTCTGACGGGAGCAGAGAGGTCCACAATTCTTCGTGCCGTGGCGGCGGGC
CTGCTTGAGAGCACCAAGGACATTCTCGCGGCGAATGAGAGAGATTTGGT
GGCTGCGCGGGATTCGGAGTTGGCGGGCCCGTTGCTATCTAGGCTGGAGC
TGAGTGAGGGGAAAATCAAGACCCTGGCCGAGGGAATTACGGCCTTGGCG
GATATGGAGGAGCCGTTGGGGAGGATTATATCCCGAATGGAGGTTGCGTA
TGGCTTGGAGTTGACGCAGTTGACCGTACCGATTGGTGTGCTCCTAGTCG
TGTTTGAGTCGCGCCCGGACTCCTTGCCGCAGATTGCAGCCTTGGCGTTG
CGAAGTGGGAACGGATTGTTGTTGAAGGGTGGCAAGGAAGCATTGCATTC
CAATCAAGTCCTCCATCGCGTAATCACGGAAGCCATGACCACTGCCTCTC
AAGGTGTCGTCCCCGCCGAGACCATCGGCCTTGTCACTTCCCGTGCGGAG
GTCTCGGGCTTGTTAGAACTGGACGATGTCATCGATCTAGTCATCCCCAG
GGGCTCCTCCGCCCTTGTCCGGAGCATCAAATCTCAGACCCGAATCCCTG
TCTTGGGGCATGCCGAAGGTGTGTGTCACATTTACGTCGACCAGGCAGCG
GACGTGACCAAAGCTTGCCGTATCGTGGTCGATGCCAAAACGGACTACCC
CGCGGCCTGCAACGCCGTCGAGACGCTTCTGCTTCACCGATCCTTCGTAG
CGGATGGTGCTATTGCGGCAAGCAAAATCTTGCGCGCGCTTATGTCTGCA
GGCGTAACGGTGTTGGGCGGGCCCGAGGCAGTGAAGGAGGGTTTGGTATC
CCCAGGCCACGCAGCTAAGGACATGAAGCAAGAGTACGGGGAGCTGACTA
TCACGGTTGAAGTCGTCCCGGATGTACACGCAGCAGTAGACCATATTCAC
AAGTATGGGAGCTCTCACACCGAGGCTATCATCACCGAAGATCAAGCAAC
TGCAGAATACTTCCTCAAGAGCATTGATTCGGCCTGTGTCTTCCACAATG
CCAGCACGCGTTTTGCAGACGGGTACCGGTTTGGATTGGGCGCAGAGGTT
GGGATTAGTACCGGGAGGATTCATGCGCGAGGACCTGTGGGTGTAGAGGG
ACTGTTGACGACCAAGTGGCTTATGCAGTCGGCCGGGAGTCACACGGTGG
CGGACTTTGCGCCGGGTGGGGGGGAGGTTTATGTGCATCGAAAGTTACCT
TTGATCGAGGGAAAGTAA back to topCoding sequence (CDS) from alignment at chr3:394275..396892+ >NO03G01270.1 ID=NO03G01270.1|Name=NO03G01270.1|organism=Nannochloropsis oceanica|type=CDS|length=2331bp|location=Sequence derived from alignment at chr3:394275..396892+ (Nannochloropsis oceanica) ATGGCGGCAGAGATACGGGAACTGCTGAAGGGCTCGCAGCGTGTTGTCAT CAAGGCTGGGACCTCCGTCGTCTCTACTCCCGAAGGCTATCCCTCCCTTG TGCGGTTGGCCAACATTGTGGAGCAGATCTGCACCCTAAAAAATGAGGGG CGGGATGTCCTCCTCGTCACCAGCGGGTCCGTAGGCATTGGCCGGCAACT TCTCTCGAAGCAAAAACGCCTCTCCCTCTCTGTCCGTGACGTTGTCAGTG GTATCCCAAACACAACAGAAGCCGAAGAAGACGGGTACGACAGTGCGTGT GCGGCAGCTGGGCAATTAGGGCTCATGTCTTTGTATGACACCCTTTTTTC CACCCGACAAGTCGCTTCCTCCCAGATCCTTGTCACCGGCTACGACTTTA CGTGTGCTGATCGGCGGGAGCATATTCAGTACTGTGTAAATTCCCTTCTT AAGCTTGGTATCGTCCCTATCATCAATGAAAATGACGCTGTATCAGGTAA TGAAGGCTACACGGAATCTACCGTCTTCTCCGACAACGACTCTCTCGCCG CGCTAGTCGCCAGCGAGGTGCAAGCCGAACTTCTCATTCTTCTGACGGAC GTGGGGGGGGTATATGATAAGCCACCGAGTGATCCCGACGCCAAGCATGT CGGAATCTTCCGGCACGAATCCTGCCCCGACATTGGCGCTAAGTCCGCAC AAGGCCGAGGAGGGATGCAAGCGAAGATTGCCGCGTCCATGATGGCGGCC AGGGAAGGTGTCGACCATGTTGTGATTGCAAGTGGGCATGAAATGGGTGT GATAGCAAAGATTGCCTCGGGGGAGAACACGGGGACATTGTTTTGTCGCG GCCTGTTGTATCCGCCCGAGGACGATTTAATGACATCCACGGACTCTGTG CAATCCGCGTATGGAAGCGGAGGGGGAGACAGTAATGATGATGTTATGCC GGCGCGTGCAATGAGCACCAATGGCTTGCTCGAGGGACTGCTGGCCGCAG AGGCTGATGGGGGGGTGCGTGGACAGGCTGAGGCGGCGAGGGAGGGACAG CGGTCGTTGGCAAGTCTGACGGGAGCAGAGAGGTCCACAATTCTTCGTGC CGTGGCGGCGGGCCTGCTTGAGAGCACCAAGGACATTCTCGCGGCGAATG AGAGAGATTTGGTGGCTGCGCGGGATTCGGAGTTGGCGGGCCCGTTGCTA TCTAGGCTGGAGCTGAGTGAGGGGAAAATCAAGACCCTGGCCGAGGGAAT TACGGCCTTGGCGGATATGGAGGAGCCGTTGGGGAGGATTATATCCCGAA TGGAGGTTGCGTATGGCTTGGAGTTGACGCAGTTGACCGTACCGATTGGT GTGCTCCTAGTCGTGTTTGAGTCGCGCCCGGACTCCTTGCCGCAGATTGC AGCCTTGGCGTTGCGAAGTGGGAACGGATTGTTGTTGAAGGGTGGCAAGG AAGCATTGCATTCCAATCAAGTCCTCCATCGCGTAATCACGGAAGCCATG ACCACTGCCTCTCAAGGTGTCGTCCCCGCCGAGACCATCGGCCTTGTCAC TTCCCGTGCGGAGGTCTCGGGCTTGTTAGAACTGGACGATGTCATCGATC TAGTCATCCCCAGGGGCTCCTCCGCCCTTGTCCGGAGCATCAAATCTCAG ACCCGAATCCCTGTCTTGGGGCATGCCGAAGGTGTGTGTCACATTTACGT CGACCAGGCAGCGGACGTGACCAAAGCTTGCCGTATCGTGGTCGATGCCA AAACGGACTACCCCGCGGCCTGCAACGCCGTCGAGACGCTTCTGCTTCAC CGATCCTTCGTAGCGGATGGTGCTATTGCGGCAAGCAAAATCTTGCGCGC GCTTATGTCTGCAGGCGTAACGGTGTTGGGCGGGCCCGAGGCAGTGAAGG AGGGTTTGGTATCCCCAGGCCACGCAGCTAAGGACATGAAGCAAGAGTAC GGGGAGCTGACTATCACGGTTGAAGTCGTCCCGGATGTACACGCAGCAGT AGACCATATTCACAAGTATGGGAGCTCTCACACCGAGGCTATCATCACCG AAGATCAAGCAACTGCAGAATACTTCCTCAAGAGCATTGATTCGGCCTGT GTCTTCCACAATGCCAGCACGCGTTTTGCAGACGGGTACCGGTTTGGATT GGGCGCAGAGGTTGGGATTAGTACCGGGAGGATTCATGCGCGAGGACCTG TGGGTGTAGAGGGACTGTTGACGACCAAGTGGCTTATGCAGTCGGCCGGG AGTCACACGGTGGCGGACTTTGCGCCGGGTGGGGGGGAGGTTTATGTGCA TCGAAAGTTACCTTTGATCGAGGGAAAGTAA back to top
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