NO03G01070.1, NO03G01070.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G01070.1
Unique Name	NO03G01070.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2493
Alignment location	chr3:334806..337298 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:334806..337298 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO03G01070.1 vs.
Match: EWM29531.1 (RNase Z-like protein [Nannochloropsis gaditana])

HSP 1 Score: 422.9 bits (1086), Expect = 2.200e-114
Identity = 213/290 (73.45%), Postives = 241/290 (83.10%), Query Frame = 0

Query:  537 MLLDVGEGSLGQLANLYEGEALSRVLVNLKAIWISHPHADHHLGLMKVLVARRRAAASLFLPGGVPFPLLVLAPRPLLAWLREYRQWDPAVQW---YCNDRGGEEDGMKGGKEEEYLVDVEHMTPFAFTFLKRELGLLNLTNVVVHHCPFAFGVVLDGVAGWRLVYSGDTRPCQRLVQAGKGATILIHEATFESGKAVDAVERKHSTVDEALDVARRMEAKTVILTHFSQRYPKFPVLPTGSELRVIVAFDLMTLRFRDVSRAAALLPMLQKLFPSEEEEVGEEVVLGEV 824
            MLLDVGEGSLGQLA+LYEG  L  VL++L AIWISHPHADHHLGLMKVL ARR+AAA L L GG P P+L++APRP+LAWLRE+R WD  V+W      DRGG E  MK    E YLVD+E M+PFA+ +L+REL LLNLTNV VHHCPFAFGVVLDG AGWRLVYSGDTRPC+RL QAG+GAT+LIHEATF + KA +AVERKHSTV EALDVARRMEAKTVILTHFSQRYPKFPVLP   EL+V VAFDLMTLRF+DV RAAALLP LQKLFP EEE   E++++ ++
Sbjct:    1 MLLDVGEGSLGQLASLYEGPTLWEVLISLSAIWISHPHADHHLGLMKVLAARRQAAADLGLLGGKPPPMLIMAPRPVLAWLREHRSWDATVEWGEAVEGDRGGGEGLMK----ENYLVDMERMSPFAYQYLERELDLLNLTNVGVHHCPFAFGVVLDGRAGWRLVYSGDTRPCRRLEQAGRGATVLIHEATFGNEKAAEAVERKHSTVGEALDVARRMEAKTVILTHFSQRYPKFPVLPPDYELQVCVAFDLMTLRFKDVGRAAALLPALQKLFPVEEEASDEQILMSQI 286

The following BLAST results are available for this feature:

BLAST of NO03G01070.1 vs.

BLAST of NO03G01070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29531.1	2.200e-114	73.45	RNase Z-like protein [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G01070	NO03G01070	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G01070.1	NO03G01070.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G01070.1.cds1	NO03G01070.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:334806..337298-
coding sequence from alignment at chr3:334806..337298-

mRNA sequence

>NO03G01070.1 ID=NO03G01070.1|Name=NO03G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2493bp
ATGACCACCAGCAAGCCCTTTGCCCAAGCCAATATCCAGGCTCATCTCCA
GATCCTGAGTGTCGGCGCCGCAGAGGCTTCCCCAACATGCCTGGTCATCA
CTGACCGGGACCGCTTCATGCTGAATGTGGGCGAAGGCACGCAACGGCTG
GCCATGGAGCACAAGGTCCGCCTCACGCGTTTTGACCACATATTTCTCAC
GGCTTTGACGCCTGAGGCACTCGGTGGCTTGCCGGGCATGCTTCTGACCA
TGGCTGATTGTGGCAAGACGGCCATCAGCATCCATGGTCCCGTAGGCCTC
CGGGCGCTCCTACGGTCCACTTCCCATTTCATGCGTCGAGAAGACCTCAA
GATAATCATTCGAGAGTACGGTACGACTGGGCTGGCTATGCAAGGGCCCA
CCTTGGCCATGCATGCTCTACCCCTGCTTCCTACTCTGTCTCCTTGTACT
GGTGCTCCGGAGCAACAACCACCACAGCTCCCAGCCGAGCACGAGCAGAT
GGAGGAGCAACAGAATGGGAAGGAACCCATGGCGAAACGTCCCCGCACCG
CCACAGCCAGTCCTTTTTCCTCCGCATCATCTCCTCCCATCATGGCCTGG
GTAGGTCTGACGGCGAGTGTTTTGGGAAAATTTGACGTGGTGCGGGCCAG
GGAGCTAGGGATTCCTACGGGACCTCTTTATGGGAAACTGAAGGCGGGAC
ACGCTGTCACTCTACCCGACGGCCGCTCCATCCAACCAGAGGAGGTAGTT
GCTCCACCTACACCTGGGGCCATCTTTGGGGTCATTCACCTGCCGGATGG
TGGGAGAGAAGGGAAGAAGGAGGGGAATGGCGACTGCAATACATTTTCTT
CTCTTCTGGCCCTACCCCATCCCAAATTTTGGGTTGAGGCCGCTTTGGAC
ACTGCTGCTGCGATGGCAGCTGCAGATACACTTCATCTTACCTGCATGCT
GCATTACACTTCCGCTGCCGTTGTTCACACTCCATTGTACCAGGAATGGA
TGAAGAGCTTCGGGCCCTCCACCACTCACATTCTTACTGCCCTGCCTTCA
GGAACGCACCAGAATCCCTATCGTGCTGCGAGAATAAACAATCTACGATT
ACATTTCTTAGATCCAGTGATCTTTCCAAGGGCAGCAGCGCCATCGAATA
TTCCTTCTATTCTTCCGGGAAAGGAGGAGGGGGAGGAAGGGGAGGAGGAG
AGGCTAAATGTGGTGTGGGGGAAGAATCTTATGAAATACCAGCTGTTGCC
TGAGAACAAGAAGGGCGTGGACGAGTTGGGGGTGTTAGAGGACGTGGGCA
AGGTGGAGGAAGAGGAACTCCGGGCCGATGCAGAGTTTCGCCAAGTGATG
CTACCGCTGCCACTAACAGTGCAGGAGGAGGAGATGGAGGGAGAAGAGGA
GCAGGGGGACGATGAGGGAGTAGAGGAGGTAGAGATTGTGTTTTTAGGCA
CGGGCTCGGCTATTCCCTCTAAGTACCGCAATGTCTCGGGGATTTACTTG
CGGATTGGGGGTAGTGGGGAGAGGAGGAGGAGGAGGAGGAGGAAGATGGG
GGGGGGGGAGGGAGGAGATGGAGGCGACGCTCGTGAAGAGGGAGACACTG
CCAAAGGCATGCTTTTGGATGTGGGGGAGGGTTCTTTAGGCCAACTGGCT
AATTTGTACGAAGGGGAGGCCCTCTCCCGTGTGCTGGTGAATTTGAAGGC
TATCTGGATCTCGCACCCCCACGCCGATCACCACCTCGGTCTGATGAAAG
TGTTGGTGGCCCGCCGACGGGCTGCAGCGAGTCTATTCCTTCCAGGGGGG
GTGCCTTTCCCTCTTCTTGTCTTAGCTCCTAGGCCTTTGTTGGCCTGGCT
ACGCGAATACAGACAGTGGGATCCGGCCGTGCAATGGTACTGCAATGACA
GGGGAGGGGAGGAGGACGGGATGAAGGGAGGAAAGGAGGAAGAGTACCTT
GTTGACGTTGAGCATATGACGCCGTTTGCGTTTACGTTTTTGAAGCGGGA
GTTGGGTTTGCTCAATTTGACGAACGTGGTCGTTCATCATTGTCCCTTCG
CCTTTGGTGTTGTCTTAGACGGCGTTGCTGGCTGGCGGTTAGTCTACTCA
GGCGACACCCGGCCCTGTCAACGTCTGGTACAAGCAGGGAAAGGTGCGAC
GATCCTGATCCATGAAGCCACCTTCGAGAGCGGTAAAGCTGTCGACGCGG
TTGAACGGAAGCATAGCACGGTGGACGAGGCGTTGGACGTCGCAAGAAGG
ATGGAGGCCAAGACGGTGATTCTGACGCATTTCAGTCAGAGGTACCCCAA
ATTTCCTGTATTGCCCACTGGGTCGGAGCTTCGTGTCATCGTGGCTTTCG
ATCTGATGACGTTGCGTTTCCGGGATGTCAGCCGGGCGGCCGCGCTATTG
CCGATGCTGCAAAAGCTGTTTCCTTCCGAGGAAGAGGAGGTGGGGGAGGA
GGTGGTGCTGGGAGAGGTGGGTTTGGGTGGTGGACCAAAATAA

protein sequence of NO03G01070.1

>NO03G01070.1-protein ID=NO03G01070.1-protein|Name=NO03G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=831bp
MTTSKPFAQANIQAHLQILSVGAAEASPTCLVITDRDRFMLNVGEGTQRL
AMEHKVRLTRFDHIFLTALTPEALGGLPGMLLTMADCGKTAISIHGPVGL
RALLRSTSHFMRREDLKIIIREYGTTGLAMQGPTLAMHALPLLPTLSPCT
GAPEQQPPQLPAEHEQMEEQQNGKEPMAKRPRTATASPFSSASSPPIMAW
VGLTASVLGKFDVVRARELGIPTGPLYGKLKAGHAVTLPDGRSIQPEEVV
APPTPGAIFGVIHLPDGGREGKKEGNGDCNTFSSLLALPHPKFWVEAALD
TAAAMAAADTLHLTCMLHYTSAAVVHTPLYQEWMKSFGPSTTHILTALPS
GTHQNPYRAARINNLRLHFLDPVIFPRAAAPSNIPSILPGKEEGEEGEEE
RLNVVWGKNLMKYQLLPENKKGVDELGVLEDVGKVEEEELRADAEFRQVM
LPLPLTVQEEEMEGEEEQGDDEGVEEVEIVFLGTGSAIPSKYRNVSGIYL
RIGGSGERRRRRRRKMGGGEGGDGGDAREEGDTAKGMLLDVGEGSLGQLA
NLYEGEALSRVLVNLKAIWISHPHADHHLGLMKVLVARRRAAASLFLPGG
VPFPLLVLAPRPLLAWLREYRQWDPAVQWYCNDRGGEEDGMKGGKEEEYL
VDVEHMTPFAFTFLKRELGLLNLTNVVVHHCPFAFGVVLDGVAGWRLVYS
GDTRPCQRLVQAGKGATILIHEATFESGKAVDAVERKHSTVDEALDVARR
MEAKTVILTHFSQRYPKFPVLPTGSELRVIVAFDLMTLRFRDVSRAAALL
PMLQKLFPSEEEEVGEEVVLGEVGLGGGPK*

mRNA from alignment at chr3:334806..337298-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G01070.1 ID=NO03G01070.1|Name=NO03G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2493bp|location=Sequence derived from alignment at chr3:334806..337298- (Nannochloropsis oceanica)
ATGACCACCAGCAAGCCCTTTGCCCAAGCCAATATCCAGGCTCATCTCCA
GATCCTGAGTGTCGGCGCCGCAGAGGCTTCCCCAACATGCCTGGTCATCA
CTGACCGGGACCGCTTCATGCTGAATGTGGGCGAAGGCACGCAACGGCTG
GCCATGGAGCACAAGGTCCGCCTCACGCGTTTTGACCACATATTTCTCAC
GGCTTTGACGCCTGAGGCACTCGGTGGCTTGCCGGGCATGCTTCTGACCA
TGGCTGATTGTGGCAAGACGGCCATCAGCATCCATGGTCCCGTAGGCCTC
CGGGCGCTCCTACGGTCCACTTCCCATTTCATGCGTCGAGAAGACCTCAA
GATAATCATTCGAGAGTACGGTACGACTGGGCTGGCTATGCAAGGGCCCA
CCTTGGCCATGCATGCTCTACCCCTGCTTCCTACTCTGTCTCCTTGTACT
GGTGCTCCGGAGCAACAACCACCACAGCTCCCAGCCGAGCACGAGCAGAT
GGAGGAGCAACAGAATGGGAAGGAACCCATGGCGAAACGTCCCCGCACCG
CCACAGCCAGTCCTTTTTCCTCCGCATCATCTCCTCCCATCATGGCCTGG
GTAGGTCTGACGGCGAGTGTTTTGGGAAAATTTGACGTGGTGCGGGCCAG
GGAGCTAGGGATTCCTACGGGACCTCTTTATGGGAAACTGAAGGCGGGAC
ACGCTGTCACTCTACCCGACGGCCGCTCCATCCAACCAGAGGAGGTAGTT
GCTCCACCTACACCTGGGGCCATCTTTGGGGTCATTCACCTGCCGGATGG
TGGGAGAGAAGGGAAGAAGGAGGGGAATGGCGACTGCAATACATTTTCTT
CTCTTCTGGCCCTACCCCATCCCAAATTTTGGGTTGAGGCCGCTTTGGAC
ACTGCTGCTGCGATGGCAGCTGCAGATACACTTCATCTTACCTGCATGCT
GCATTACACTTCCGCTGCCGTTGTTCACACTCCATTGTACCAGGAATGGA
TGAAGAGCTTCGGGCCCTCCACCACTCACATTCTTACTGCCCTGCCTTCA
GGAACGCACCAGAATCCCTATCGTGCTGCGAGAATAAACAATCTACGATT
ACATTTCTTAGATCCAGTGATCTTTCCAAGGGCAGCAGCGCCATCGAATA
TTCCTTCTATTCTTCCGGGAAAGGAGGAGGGGGAGGAAGGGGAGGAGGAG
AGGCTAAATGTGGTGTGGGGGAAGAATCTTATGAAATACCAGCTGTTGCC
TGAGAACAAGAAGGGCGTGGACGAGTTGGGGGTGTTAGAGGACGTGGGCA
AGGTGGAGGAAGAGGAACTCCGGGCCGATGCAGAGTTTCGCCAAGTGATG
CTACCGCTGCCACTAACAGTGCAGGAGGAGGAGATGGAGGGAGAAGAGGA
GCAGGGGGACGATGAGGGAGTAGAGGAGGTAGAGATTGTGTTTTTAGGCA
CGGGCTCGGCTATTCCCTCTAAGTACCGCAATGTCTCGGGGATTTACTTG
CGGATTGGGGGTAGTGGGGAGAGGAGGAGGAGGAGGAGGAGGAAGATGGG
GGGGGGGGAGGGAGGAGATGGAGGCGACGCTCGTGAAGAGGGAGACACTG
CCAAAGGCATGCTTTTGGATGTGGGGGAGGGTTCTTTAGGCCAACTGGCT
AATTTGTACGAAGGGGAGGCCCTCTCCCGTGTGCTGGTGAATTTGAAGGC
TATCTGGATCTCGCACCCCCACGCCGATCACCACCTCGGTCTGATGAAAG
TGTTGGTGGCCCGCCGACGGGCTGCAGCGAGTCTATTCCTTCCAGGGGGG
GTGCCTTTCCCTCTTCTTGTCTTAGCTCCTAGGCCTTTGTTGGCCTGGCT
ACGCGAATACAGACAGTGGGATCCGGCCGTGCAATGGTACTGCAATGACA
GGGGAGGGGAGGAGGACGGGATGAAGGGAGGAAAGGAGGAAGAGTACCTT
GTTGACGTTGAGCATATGACGCCGTTTGCGTTTACGTTTTTGAAGCGGGA
GTTGGGTTTGCTCAATTTGACGAACGTGGTCGTTCATCATTGTCCCTTCG
CCTTTGGTGTTGTCTTAGACGGCGTTGCTGGCTGGCGGTTAGTCTACTCA
GGCGACACCCGGCCCTGTCAACGTCTGGTACAAGCAGGGAAAGGTGCGAC
GATCCTGATCCATGAAGCCACCTTCGAGAGCGGTAAAGCTGTCGACGCGG
TTGAACGGAAGCATAGCACGGTGGACGAGGCGTTGGACGTCGCAAGAAGG
ATGGAGGCCAAGACGGTGATTCTGACGCATTTCAGTCAGAGGTACCCCAA
ATTTCCTGTATTGCCCACTGGGTCGGAGCTTCGTGTCATCGTGGCTTTCG
ATCTGATGACGTTGCGTTTCCGGGATGTCAGCCGGGCGGCCGCGCTATTG
CCGATGCTGCAAAAGCTGTTTCCTTCCGAGGAAGAGGAGGTGGGGGAGGA
GGTGGTGCTGGGAGAGGTGGGTTTGGGTGGTGGACCAAAATAA

Coding sequence (CDS) from alignment at chr3:334806..337298-

>NO03G01070.1 ID=NO03G01070.1|Name=NO03G01070.1|organism=Nannochloropsis oceanica|type=CDS|length=2493bp|location=Sequence derived from alignment at chr3:334806..337298- (Nannochloropsis oceanica)
ATGACCACCAGCAAGCCCTTTGCCCAAGCCAATATCCAGGCTCATCTCCA
GATCCTGAGTGTCGGCGCCGCAGAGGCTTCCCCAACATGCCTGGTCATCA
CTGACCGGGACCGCTTCATGCTGAATGTGGGCGAAGGCACGCAACGGCTG
GCCATGGAGCACAAGGTCCGCCTCACGCGTTTTGACCACATATTTCTCAC
GGCTTTGACGCCTGAGGCACTCGGTGGCTTGCCGGGCATGCTTCTGACCA
TGGCTGATTGTGGCAAGACGGCCATCAGCATCCATGGTCCCGTAGGCCTC
CGGGCGCTCCTACGGTCCACTTCCCATTTCATGCGTCGAGAAGACCTCAA
GATAATCATTCGAGAGTACGGTACGACTGGGCTGGCTATGCAAGGGCCCA
CCTTGGCCATGCATGCTCTACCCCTGCTTCCTACTCTGTCTCCTTGTACT
GGTGCTCCGGAGCAACAACCACCACAGCTCCCAGCCGAGCACGAGCAGAT
GGAGGAGCAACAGAATGGGAAGGAACCCATGGCGAAACGTCCCCGCACCG
CCACAGCCAGTCCTTTTTCCTCCGCATCATCTCCTCCCATCATGGCCTGG
GTAGGTCTGACGGCGAGTGTTTTGGGAAAATTTGACGTGGTGCGGGCCAG
GGAGCTAGGGATTCCTACGGGACCTCTTTATGGGAAACTGAAGGCGGGAC
ACGCTGTCACTCTACCCGACGGCCGCTCCATCCAACCAGAGGAGGTAGTT
GCTCCACCTACACCTGGGGCCATCTTTGGGGTCATTCACCTGCCGGATGG
TGGGAGAGAAGGGAAGAAGGAGGGGAATGGCGACTGCAATACATTTTCTT
CTCTTCTGGCCCTACCCCATCCCAAATTTTGGGTTGAGGCCGCTTTGGAC
ACTGCTGCTGCGATGGCAGCTGCAGATACACTTCATCTTACCTGCATGCT
GCATTACACTTCCGCTGCCGTTGTTCACACTCCATTGTACCAGGAATGGA
TGAAGAGCTTCGGGCCCTCCACCACTCACATTCTTACTGCCCTGCCTTCA
GGAACGCACCAGAATCCCTATCGTGCTGCGAGAATAAACAATCTACGATT
ACATTTCTTAGATCCAGTGATCTTTCCAAGGGCAGCAGCGCCATCGAATA
TTCCTTCTATTCTTCCGGGAAAGGAGGAGGGGGAGGAAGGGGAGGAGGAG
AGGCTAAATGTGGTGTGGGGGAAGAATCTTATGAAATACCAGCTGTTGCC
TGAGAACAAGAAGGGCGTGGACGAGTTGGGGGTGTTAGAGGACGTGGGCA
AGGTGGAGGAAGAGGAACTCCGGGCCGATGCAGAGTTTCGCCAAGTGATG
CTACCGCTGCCACTAACAGTGCAGGAGGAGGAGATGGAGGGAGAAGAGGA
GCAGGGGGACGATGAGGGAGTAGAGGAGGTAGAGATTGTGTTTTTAGGCA
CGGGCTCGGCTATTCCCTCTAAGTACCGCAATGTCTCGGGGATTTACTTG
CGGATTGGGGGTAGTGGGGAGAGGAGGAGGAGGAGGAGGAGGAAGATGGG
GGGGGGGGAGGGAGGAGATGGAGGCGACGCTCGTGAAGAGGGAGACACTG
CCAAAGGCATGCTTTTGGATGTGGGGGAGGGTTCTTTAGGCCAACTGGCT
AATTTGTACGAAGGGGAGGCCCTCTCCCGTGTGCTGGTGAATTTGAAGGC
TATCTGGATCTCGCACCCCCACGCCGATCACCACCTCGGTCTGATGAAAG
TGTTGGTGGCCCGCCGACGGGCTGCAGCGAGTCTATTCCTTCCAGGGGGG
GTGCCTTTCCCTCTTCTTGTCTTAGCTCCTAGGCCTTTGTTGGCCTGGCT
ACGCGAATACAGACAGTGGGATCCGGCCGTGCAATGGTACTGCAATGACA
GGGGAGGGGAGGAGGACGGGATGAAGGGAGGAAAGGAGGAAGAGTACCTT
GTTGACGTTGAGCATATGACGCCGTTTGCGTTTACGTTTTTGAAGCGGGA
GTTGGGTTTGCTCAATTTGACGAACGTGGTCGTTCATCATTGTCCCTTCG
CCTTTGGTGTTGTCTTAGACGGCGTTGCTGGCTGGCGGTTAGTCTACTCA
GGCGACACCCGGCCCTGTCAACGTCTGGTACAAGCAGGGAAAGGTGCGAC
GATCCTGATCCATGAAGCCACCTTCGAGAGCGGTAAAGCTGTCGACGCGG
TTGAACGGAAGCATAGCACGGTGGACGAGGCGTTGGACGTCGCAAGAAGG
ATGGAGGCCAAGACGGTGATTCTGACGCATTTCAGTCAGAGGTACCCCAA
ATTTCCTGTATTGCCCACTGGGTCGGAGCTTCGTGTCATCGTGGCTTTCG
ATCTGATGACGTTGCGTTTCCGGGATGTCAGCCGGGCGGCCGCGCTATTG
CCGATGCTGCAAAAGCTGTTTCCTTCCGAGGAAGAGGAGGTGGGGGAGGA
GGTGGTGCTGGGAGAGGTGGGTTTGGGTGGTGGACCAAAATAA

Synonyms

Publications