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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:216990..220737 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G00680.1 vs.
Match: XP_024575122.1 (hypothetical protein L914_16740 [Plasmopara halstedii]; CEG38753.1 hypothetical protein L914_16740 [Plasmopara halstedii]) HSP 1 Score: 342.0 bits (876), Expect = 4.200e-90 Identity = 182/328 (55.49%), Postives = 236/328 (71.95%), Query Frame = 0
Query: 281 KYPLR---TSNGSSSSSSSSNNNNKNNNNNSMTSLCFRPPLPSASSLPPSLPLTLFPSIPKRILKTVGEAIRDWDMINEGDRLCLGLSGGKDSLTLLHVLLHLQKKAPIRFSISCATVDPQTPSFDPSPLIPYVKALGVPYHYLSHPIIDQAKIQLQGDSLCSFCSRMKRGLLYTCCVEHNYNKLILAQHLDDVIESLFMSLMHNGQTRTMKAHY-TGERGVRVIRPLIYTREGETKAFATSNRLPIINENCPACFEQPKERARMKKMLSKEESLMPRMYSNLRRGIIPLLDEDMYNVIQSKYAAIEERIKHRKANKAVVATKGKKKE 605
KYPLR +SN ++ S S N+ + N+S + L ++ LFP+ PK++L+ VG+AI WDMI EGDRL LG+SGGKDSL+LLHVLL QK+APIRF ++CATVDPQTPSFDPSPL Y+ LG+ YHYLS II++AK ++ GDSLCSFC+RMKRGLLYTCC +NKL+LAQHLDD+ ES FMS MHNGQ RTMKA Y +R V ++RPL Y RE E K FA +RLP+INENCPACFE+PKER R+KKML++EESL P MY++LRR ++PL+D+ Y +++ A +E + RK + +KG+K++
Sbjct: 684 KYPLRLIISSNVEGNTESCSTNHCGVSTNSSTATSVQETTLAMTQK---TIATKLFPTPPKKLLRLVGQAIMQWDMIQEGDRLLLGVSGGKDSLSLLHVLLSFQKRAPIRFKLACATVDPQTPSFDPSPLKDYMHTLGLEYHYLSENIIERAKCEMNGDSLCSFCARMKRGLLYTCCRNFGFNKLVLAQHLDDLAESFFMSAMHNGQLRTMKAKYWNDQRDVEILRPLAYVREIELKKFAYDSRLPVINENCPACFEEPKERHRVKKMLAQEESLYPDMYNSLRRALLPLMDDTSYTALKAVRARVEHAKQVRKRAPS-SKSKGQKRQ 1007
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G00680.1 ID=NO03G00680.1|Name=NO03G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2221bp ATGATAGTGCGGGGACAGCATTCTTCCTCCTCCACCTCCTCCTCCTCGTC GTCGTCCTCCTCCTCCTTTTCCGGCGGGTGCTCTTATGGATCGGGGAAGC TCCGTCCGCGGCCGTGTTTCTTGGATCGCGAATCGCCTCGCTACCAGTAC CGAGAGCTGATCCATGAGCCACTCCACCCTCCCTCCCGCCGTCCCTCTAT CCCTTCCTCCGTCTTCCTCCCCTCGCGCGCCCTCCCTTCCTCTCTCCCTC CTTCCCACTCTTCCTCCTTCCCGTCCTCCGCACCAACCGACTATCGAGAA CTCACATCCCTCCGAGGGCAGCAGCAGATTCAACAGCAGCAGCAACAGCA GCAGCTTCAACAGAAGAAACGGCCGTCGGATGAACAGATGTCTCATTTAA CGGCTAACTTGAAACGGATTGCGACCTTTCGCCGTGGTGGCGTTGGCCTG GGCGCTCTGCGGCCTGCATCATCTGCCCTCCCCCTCTCCCGCCATCCTCC TCCTCCCTCCTCCTCGTCTTCCTCCTCCCCCTCTTCCTCCTCCTCGTCCC TTGTTTCCACATCCAACGGCGTCGGCCCATTTGCCATTCCTCCATTCCGA GGAGGAGGGAAGGAGAGCGGGAAGGAGGGCGGGCGAATGCAGATCGAGAG GGAAGGAGAGGTGTCTGCGGCGACGAGAAGGATGGAGGCACGGAGGGAGG AAGGAGAGGAGAGGGTTGCACAGCAGGTGCTTGGCCTAGAGGGTGGGATG CCCGCCAAACGACATGGTCACTCCTCCTCCTCCTCCACCACCTCCCCTTC CCAAGCCACGCCAGCCCCCACCCTTTCGGTCCAAAAACAAAAATACCCTC TCCGTACCAGCAACGGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAAC AACAAGAACAACAACAACAACAGCATGACCTCCCTCTGCTTCCGCCCCCC GCTCCCCTCTGCCTCCTCCCTCCCCCCCTCCCTCCCCCTCACCCTCTTCC CCTCCATTCCCAAGAGGATCCTCAAGACCGTAGGGGAGGCCATCAGGGAC TGGGATATGATAAACGAGGGGGATCGGCTATGCCTAGGCTTGAGCGGGGG CAAGGACTCCCTCACCCTCCTGCACGTGCTACTCCACCTCCAGAAAAAAG CACCCATCCGCTTCAGCATCAGCTGTGCTACTGTGGACCCCCAAACGCCC TCCTTCGATCCCTCCCCCCTCATCCCCTACGTGAAGGCCTTAGGTGTACC TTATCACTACCTCAGCCACCCCATCATCGACCAAGCCAAGATCCAGCTCC AAGGAGACTCCCTCTGCTCTTTCTGCAGCAGAATGAAGAGGGGCTTGCTC TACACTTGCTGTGTAGAGCATAATTACAATAAGCTGATCCTCGCCCAGCA CCTGGACGACGTCATCGAGTCCTTGTTCATGTCCCTCATGCACAACGGAC AGACCCGTACGATGAAGGCGCACTACACCGGCGAGCGTGGAGTCCGAGTC ATTCGGCCCCTCATCTACACCCGCGAAGGCGAGACCAAAGCCTTTGCCAC CTCCAATCGCCTGCCCATCATCAACGAAAATTGTCCTGCATGTTTCGAGC AGCCCAAGGAGCGAGCCCGAATGAAGAAAATGCTGAGCAAGGAGGAGTCT CTCATGCCACGGATGTACTCCAACCTCCGCCGGGGCATCATCCCACTGCT CGACGAGGACATGTACAACGTCATCCAGAGCAAGTACGCCGCCATTGAAG AGCGGATCAAGCACCGGAAGGCCAACAAGGCAGTTGTGGCTACCAAAGGA AAAAAGAAGGAGGGAGAGGGGGAGAGGGAGGAGGGGGAGGAAGAGAAGGA GGGAGGGGAGGGGAAGGAGGTAGGGAGAGGGGGGAGGGAGGGAGGGAGGG AGGGGACGAGGGAGGACGCGATGGGGAAGGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA GGAGGAGGAGGGATTGAAAGGGACGGGATGTGAGGGTGGGGTGTGCTTGG GAATGATGGTGGACGAGGAGAGTGGGCAGAGGGAGTAGAGGGGGAGGGGC AGGTAAGGAGGGAAGGAGGGTGGTTTGGCATTTGTAGCGGTAGGTTGAAA TGAATTGTGGGATTGATTTGTATTAGAAAGAATGATTTTGGGATTGATTT GTATTAGAAAGAATGATTGTG back to topprotein sequence of NO03G00680.1 >NO03G00680.1-protein ID=NO03G00680.1-protein|Name=NO03G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=696bp MIVRGQHSSSSTSSSSSSSSSSFSGGCSYGSGKLRPRPCFLDRESPRYQY RELIHEPLHPPSRRPSIPSSVFLPSRALPSSLPPSHSSSFPSSAPTDYRE LTSLRGQQQIQQQQQQQQLQQKKRPSDEQMSHLTANLKRIATFRRGGVGL GALRPASSALPLSRHPPPPSSSSSSSPSSSSSSLVSTSNGVGPFAIPPFR GGGKESGKEGGRMQIEREGEVSAATRRMEARREEGEERVAQQVLGLEGGM PAKRHGHSSSSSTTSPSQATPAPTLSVQKQKYPLRTSNGSSSSSSSSNNN NKNNNNNSMTSLCFRPPLPSASSLPPSLPLTLFPSIPKRILKTVGEAIRD WDMINEGDRLCLGLSGGKDSLTLLHVLLHLQKKAPIRFSISCATVDPQTP SFDPSPLIPYVKALGVPYHYLSHPIIDQAKIQLQGDSLCSFCSRMKRGLL YTCCVEHNYNKLILAQHLDDVIESLFMSLMHNGQTRTMKAHYTGERGVRV IRPLIYTREGETKAFATSNRLPIINENCPACFEQPKERARMKKMLSKEES LMPRMYSNLRRGIIPLLDEDMYNVIQSKYAAIEERIKHRKANKAVVATKG KKKEGEGEREEGEEEKEGGEGKEVGRGGREGGREGTREDAMGKEEEEEEE EEEEEEEEEEEEEEEEEEEEGLKGTGCEGGVCLGMMVDEESGQRE* back to topmRNA from alignment at chr3:216990..220737- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G00680.1 ID=NO03G00680.1|Name=NO03G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=3748bp|location=Sequence derived from alignment at chr3:216990..220737- (Nannochloropsis oceanica) ATGATAGTGCGGGGACAGCATTCTTCCTCCTCCACCTCCTCCTCCTCGTC
GTCGTCCTCCTCCTCCTTTTCCGGCGGGTGCTCTTATGGATCGGGGAAGC
TCCGTCCGCGGCCGTGTTTCTTGGATCGGTACGTCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTTCCTCCCTCTCAGTGTTACTCAACTTCATTTT
TCATCCTTCCTCCTTCCCTTTCCACCGCCCCTCCCTCCGTCCCTTCCTCC
TCCCCCTTCCCCCCCCCCAGCGAATCGCCTCGCTACCAGTACCGAGAGCT
GATCCATGAGCCACTCCACCCTCCCTCCCGCCGTCCCTCTATCCCTTCCT
CCGTCTTCCTCCCCTCGCGCGCCCTCCCTTCCTCTCTCCCTCCTTCCCAC
TCTTCCTCCTTCCCGTCCTCCGCACCAACCGACTATCGAGAACTCACATC
CCTCCGAGGGCAGCAGCAGATTCAACAGCAGCAGCAACAGCAGCAGCTTC
AACAGAAGAAACGGCCGTCGGATGAACAGATGTCTCATTTAACGGCTAAC
TTGAAACGGATTGCGACCTTTCGCCGGTAGGTGGAGAGAAGGAGGGAGGG
AGGGAAGGAGGGAAGGAGGGAGCGAAGGAAGGAAGGAGGAAGGGAGGGAG
GACATCATTCGCGCAATTTCGTCATTTCCCCCCTCATGTCTCTTCTGTCT
CTCTCTCCCTCCCTCCCTCCCTCCCTCCCTTCTCAGTGGTGGCGTTGGCC
TGGGCGCTCTGCGGCCTGCATCATCTGCCCTCCCCCTCTCCCGCCATCCT
CCTCCTCCCTCCTCCTCGTCTTCCTCCTCCCCCTCTTCCTCCTCCTCGTC
CCTTGTTTCCACATCCAACGGCGTCGGCCCATTTGCCATTCCTCCATTCC
GAGGAGGAGGGAAGGAGAGCGGGAAGGAGGGCGGGCGAATGCAGATCGAG
AGGGAAGGAGAGGTGTCTGCGGCGACGAGAAGGATGGAGGCACGGAGGGA
GGAAGGAGAGGAGAGGGTTGCACAGCAGGTGCTTGGCCTAGAGGGTGGGA
TGCCCGCCAAACGACATGGTAAGGAGGAAGGAAGGGTGGGAGGGCGGGAG
GGAGGGAGAAGGAGCCTGGAGAAAGGGATAAAGAGATTCCACCGCTTACA
TCCCTGCCCTCTTTTCTACCTCCTCCCCTCCCTCCCTCCCTCCCTCCCCC
CCTTCCTCCGTTCCTCCCTCCCTCCCTTCTCTTCCCTACAGGTCACTCCT
CCTCCTCCTCCACCACCTCCCCTTCCCAAGCCACGCCAGCCCCCACCCTT
TCGGTCCAAAAACAAAAATACCCTCTCCGTACCAGCAACGGCAGCAGCAG
CAGCAGCAGCAGCAGCAACAACAACAACAAGAACAACAACAACAACAGCA
TGACCTCCCTCTGCTTCCGCCCCCCGCTCCCCTCTGCCTCCTCCCTCCCC
CCCTCCCTCCCCCTCACCCTCTTCCCCTCCATTCCCAAGAGGATCCTCAA
GACCGTAGGGGAGGCCATCAGGGACTGGGATATGATAAACGAGGTGAGGG
AAGGAGAAAGGAATTGCGGATTATGAAAATCCTAATTCAATTAAATTAGC
CTAATAGAACGATCTTAATTTGTAAACTGCCAACAGAACCCAGTTTGATT
ATCTAAATCTGTTCCATTACCAACATCAGGGGGATCGGCTATGCCTAGGC
TTGAGCGGGGGCAAGGACTCCCTCACCCTCCTGCACGTGCTACTCCACCT
CCAGGTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTGCCTCCATCTCGCTTACCCCTCCCTGCTCCCCTCCCCCCTCC
CTCAGAAAAAAGCACCCATCCGCTTCAGCATCAGCTGTGCTACTGTGGAC
CCCCAAACGCCCTCCTTCGATCCCTCCCCCCTCATCCCCTACGTGAAGGC
CTTAGGTGTACCTTATCACTACCTCAGCCACCCCATCATCGACCAAGCCA
AGGTACACCCTCCCTCCCTCCTTCCCTTTCTCCTTCCTTTGCTTCCCTTC
CCCCCTTTCCCGCAGCCATCATCGTCTTTTTTCCTTCTTTCTTGACTCTT
CTTTCTTCTCCCTCCTCTATCCCTCTCCCTCCCTCCCTTCCTCTTTCCCT
TCCTCCTTTCACTTTTTCTCTTACCTCCCTCCGCTCCCTTCACCCTCACT
CCCTCCCTTCCTCTTGTTCTCTCTCCTCTATCCCTCTCCCCCCTCCCTTC
CTCTTTCCCTCCCTCCTTTCACTTTTTCTCTTCCCTCCCTCCCCCCCCTT
TCCCCCCCTCCCTCCCTCCCTCCCTCAGATCCAGCTCCAAGGAGACTCCC
TCTGCTCTTTCTGCAGCAGAATGAAGAGGGGCTTGCTCTACACTTGCTGT
GTAGAGCATAATTACAATAAGCTGATCCTCGCCCAGCACCTGGACGACGT
CATCGAGTCCTTGTTCATGTCCCTCATGCACAACGGACAGGTAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGTCGGCAGCGCCATCCACCC
TGCGATCTACATGCCACGCGAGGAGGATCAAACTGGTCTCTTGTCCCTCC
CTCCTTCCCCTCCTCCTTCCGCAGACCCGTACGATGAAGGCGCACTACAC
CGGCGAGCGTGGAGTCCGAGTCATTCGGCCCCTCATCTACACCCGCGAAG
GCGAGACCAAAGCCTTTGCCACCTCCAATCGCCTGCCCATCATCAACGAA
AATTGTCCTGCATGTTTCGAGCAGCCCAAGGTAAGGATGAGGCTTGGGGC
CCCTCCCTCCCTCCCTCCACTTCCCCCTACCCGCTCTTTTTTCTTCTTTC
CCCCCTCCGGTTTCTCCTTGTCCGGCCGCGTTGTCTCCTCGTCTCTCTTT
TTCTCCTTGACCATAAATTGATTCCCCCCTCCCTGCCCCCCTCCCCCCCT
CCCTCCCTTCCTCCCTCCCTCCCAGGAGCGAGCCCGAATGAAGAAAATGC
TGAGCAAGGAGGAGTCTCTCATGCCACGGATGTACTCCAACCTCCGCCGG
GGCATCATCCCACTGCTCGACGAGGACATGTACAACGTCATCCAGGCACG
TACCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCT
CCTTCCCTCCAACTGTCCGTGCACTCTGCGCGTTCTGTCCCGCTGGCCTA
GACCTCCTCATTCCCTCTCTCGTTTCCCCCCCTCGTTTCCCCCCCTCCCT
CGCAGAGCAAGTACGCCGCCATTGAAGAGCGGATCAAGCACCGGAAGGCC
AACAAGGCAGTTGTGGCTACCAAAGGAAAAAAGAAGGAGGGAGAGGGGGA
GAGGGAGGAGGGGGAGGAAGAGAAGGAGGGAGGGGAGGGGAAGGAGGTAG
GGAGAGGGGGGAGGGAGGGAGGGAGGGAGGGGACGAGGGAGGACGCGATG
GGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGATTGAAAGGGA
CGGGATGTGAGGGTGGGGTGTGCTTGGGAATGATGGTGGACGAGGAGAGT
GGGCAGAGGGAGTAGAGGGGGAGGGGCAGGTAAGGAGGGAAGGAGGGTGG
TTTGGCATTTGTAGCGGTAGGTTGAAATGAATTGTGGGATTGATTTGTAT
TAGAAAGAATGATTTTGGGATTGATTTGTATTAGAAAGAATGATTGTG back to topCoding sequence (CDS) from alignment at chr3:216990..220737- >NO03G00680.1 ID=NO03G00680.1|Name=NO03G00680.1|organism=Nannochloropsis oceanica|type=CDS|length=2088bp|location=Sequence derived from alignment at chr3:216990..220737- (Nannochloropsis oceanica) ATGATAGTGCGGGGACAGCATTCTTCCTCCTCCACCTCCTCCTCCTCGTC GTCGTCCTCCTCCTCCTTTTCCGGCGGGTGCTCTTATGGATCGGGGAAGC TCCGTCCGCGGCCGTGTTTCTTGGATCGCGAATCGCCTCGCTACCAGTAC CGAGAGCTGATCCATGAGCCACTCCACCCTCCCTCCCGCCGTCCCTCTAT CCCTTCCTCCGTCTTCCTCCCCTCGCGCGCCCTCCCTTCCTCTCTCCCTC CTTCCCACTCTTCCTCCTTCCCGTCCTCCGCACCAACCGACTATCGAGAA CTCACATCCCTCCGAGGGCAGCAGCAGATTCAACAGCAGCAGCAACAGCA GCAGCTTCAACAGAAGAAACGGCCGTCGGATGAACAGATGTCTCATTTAA CGGCTAACTTGAAACGGATTGCGACCTTTCGCCGTGGTGGCGTTGGCCTG GGCGCTCTGCGGCCTGCATCATCTGCCCTCCCCCTCTCCCGCCATCCTCC TCCTCCCTCCTCCTCGTCTTCCTCCTCCCCCTCTTCCTCCTCCTCGTCCC TTGTTTCCACATCCAACGGCGTCGGCCCATTTGCCATTCCTCCATTCCGA GGAGGAGGGAAGGAGAGCGGGAAGGAGGGCGGGCGAATGCAGATCGAGAG GGAAGGAGAGGTGTCTGCGGCGACGAGAAGGATGGAGGCACGGAGGGAGG AAGGAGAGGAGAGGGTTGCACAGCAGGTGCTTGGCCTAGAGGGTGGGATG CCCGCCAAACGACATGGTCACTCCTCCTCCTCCTCCACCACCTCCCCTTC CCAAGCCACGCCAGCCCCCACCCTTTCGGTCCAAAAACAAAAATACCCTC TCCGTACCAGCAACGGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAAC AACAAGAACAACAACAACAACAGCATGACCTCCCTCTGCTTCCGCCCCCC GCTCCCCTCTGCCTCCTCCCTCCCCCCCTCCCTCCCCCTCACCCTCTTCC CCTCCATTCCCAAGAGGATCCTCAAGACCGTAGGGGAGGCCATCAGGGAC TGGGATATGATAAACGAGGGGGATCGGCTATGCCTAGGCTTGAGCGGGGG CAAGGACTCCCTCACCCTCCTGCACGTGCTACTCCACCTCCAGAAAAAAG CACCCATCCGCTTCAGCATCAGCTGTGCTACTGTGGACCCCCAAACGCCC TCCTTCGATCCCTCCCCCCTCATCCCCTACGTGAAGGCCTTAGGTGTACC TTATCACTACCTCAGCCACCCCATCATCGACCAAGCCAAGATCCAGCTCC AAGGAGACTCCCTCTGCTCTTTCTGCAGCAGAATGAAGAGGGGCTTGCTC TACACTTGCTGTGTAGAGCATAATTACAATAAGCTGATCCTCGCCCAGCA CCTGGACGACGTCATCGAGTCCTTGTTCATGTCCCTCATGCACAACGGAC AGACCCGTACGATGAAGGCGCACTACACCGGCGAGCGTGGAGTCCGAGTC ATTCGGCCCCTCATCTACACCCGCGAAGGCGAGACCAAAGCCTTTGCCAC CTCCAATCGCCTGCCCATCATCAACGAAAATTGTCCTGCATGTTTCGAGC AGCCCAAGGAGCGAGCCCGAATGAAGAAAATGCTGAGCAAGGAGGAGTCT CTCATGCCACGGATGTACTCCAACCTCCGCCGGGGCATCATCCCACTGCT CGACGAGGACATGTACAACGTCATCCAGAGCAAGTACGCCGCCATTGAAG AGCGGATCAAGCACCGGAAGGCCAACAAGGCAGTTGTGGCTACCAAAGGA AAAAAGAAGGAGGGAGAGGGGGAGAGGGAGGAGGGGGAGGAAGAGAAGGA GGGAGGGGAGGGGAAGGAGGTAGGGAGAGGGGGGAGGGAGGGAGGGAGGG AGGGGACGAGGGAGGACGCGATGGGGAAGGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA GGAGGAGGAGGGATTGAAAGGGACGGGATGTGAGGGTGGGGTGTGCTTGG GAATGATGGTGGACGAGGAGAGTGGGCAGAGGGAGTAG back to top
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