Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr3 genome chr3:216990..220737 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G00680.1 vs.
Match: XP_024575122.1 (hypothetical protein L914_16740 [Plasmopara halstedii]; CEG38753.1 hypothetical protein L914_16740 [Plasmopara halstedii])
HSP 1 Score: 342.0 bits (876), Expect = 4.200e-90
Identity = 182/328 (55.49%), Postives = 236/328 (71.95%), Query Frame = 0
Query: 281 KYPLR---TSNGSSSSSSSSNNNNKNNNNNSMTSLCFRPPLPSASSLPPSLPLTLFPSIPKRILKTVGEAIRDWDMINEGDRLCLGLSGGKDSLTLLHVLLHLQKKAPIRFSISCATVDPQTPSFDPSPLIPYVKALGVPYHYLSHPIIDQAKIQLQGDSLCSFCSRMKRGLLYTCCVEHNYNKLILAQHLDDVIESLFMSLMHNGQTRTMKAHY-TGERGVRVIRPLIYTREGETKAFATSNRLPIINENCPACFEQPKERARMKKMLSKEESLMPRMYSNLRRGIIPLLDEDMYNVIQSKYAAIEERIKHRKANKAVVATKGKKKE 605
KYPLR +SN ++ S S N+ + N+S + L ++ LFP+ PK++L+ VG+AI WDMI EGDRL LG+SGGKDSL+LLHVLL QK+APIRF ++CATVDPQTPSFDPSPL Y+ LG+ YHYLS II++AK ++ GDSLCSFC+RMKRGLLYTCC +NKL+LAQHLDD+ ES FMS MHNGQ RTMKA Y +R V ++RPL Y RE E K FA +RLP+INENCPACFE+PKER R+KKML++EESL P MY++LRR ++PL+D+ Y +++ A +E + RK + +KG+K++
Sbjct: 684 KYPLRLIISSNVEGNTESCSTNHCGVSTNSSTATSVQETTLAMTQK---TIATKLFPTPPKKLLRLVGQAIMQWDMIQEGDRLLLGVSGGKDSLSLLHVLLSFQKRAPIRFKLACATVDPQTPSFDPSPLKDYMHTLGLEYHYLSENIIERAKCEMNGDSLCSFCARMKRGLLYTCCRNFGFNKLVLAQHLDDLAESFFMSAMHNGQLRTMKAKYWNDQRDVEILRPLAYVREIELKKFAYDSRLPVINENCPACFEEPKERHRVKKMLAQEESLYPDMYNSLRRALLPLMDDTSYTALKAVRARVEHAKQVRKRAPS-SKSKGQKRQ 1007
The following BLAST results are available for this feature:
BLAST of NO03G00680.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 Expect = 4.20e-90 / Id = 55.49 Sequence XP_024575122.1
Match Name E-value Identity Description
XP_024575122.1 4.200e-90 55.49 hypothetical protein L914_16740 [Plasmopara halste... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO03G00680.1 ID=NO03G00680.1|Name=NO03G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2221bp ATGATAGTGCGGGGACAGCATTCTTCCTCCTCCACCTCCTCCTCCTCGTC GTCGTCCTCCTCCTCCTTTTCCGGCGGGTGCTCTTATGGATCGGGGAAGC TCCGTCCGCGGCCGTGTTTCTTGGATCGCGAATCGCCTCGCTACCAGTAC CGAGAGCTGATCCATGAGCCACTCCACCCTCCCTCCCGCCGTCCCTCTAT CCCTTCCTCCGTCTTCCTCCCCTCGCGCGCCCTCCCTTCCTCTCTCCCTC CTTCCCACTCTTCCTCCTTCCCGTCCTCCGCACCAACCGACTATCGAGAA CTCACATCCCTCCGAGGGCAGCAGCAGATTCAACAGCAGCAGCAACAGCA GCAGCTTCAACAGAAGAAACGGCCGTCGGATGAACAGATGTCTCATTTAA CGGCTAACTTGAAACGGATTGCGACCTTTCGCCGTGGTGGCGTTGGCCTG GGCGCTCTGCGGCCTGCATCATCTGCCCTCCCCCTCTCCCGCCATCCTCC TCCTCCCTCCTCCTCGTCTTCCTCCTCCCCCTCTTCCTCCTCCTCGTCCC TTGTTTCCACATCCAACGGCGTCGGCCCATTTGCCATTCCTCCATTCCGA GGAGGAGGGAAGGAGAGCGGGAAGGAGGGCGGGCGAATGCAGATCGAGAG GGAAGGAGAGGTGTCTGCGGCGACGAGAAGGATGGAGGCACGGAGGGAGG AAGGAGAGGAGAGGGTTGCACAGCAGGTGCTTGGCCTAGAGGGTGGGATG CCCGCCAAACGACATGGTCACTCCTCCTCCTCCTCCACCACCTCCCCTTC CCAAGCCACGCCAGCCCCCACCCTTTCGGTCCAAAAACAAAAATACCCTC TCCGTACCAGCAACGGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAAC AACAAGAACAACAACAACAACAGCATGACCTCCCTCTGCTTCCGCCCCCC GCTCCCCTCTGCCTCCTCCCTCCCCCCCTCCCTCCCCCTCACCCTCTTCC CCTCCATTCCCAAGAGGATCCTCAAGACCGTAGGGGAGGCCATCAGGGAC TGGGATATGATAAACGAGGGGGATCGGCTATGCCTAGGCTTGAGCGGGGG CAAGGACTCCCTCACCCTCCTGCACGTGCTACTCCACCTCCAGAAAAAAG CACCCATCCGCTTCAGCATCAGCTGTGCTACTGTGGACCCCCAAACGCCC TCCTTCGATCCCTCCCCCCTCATCCCCTACGTGAAGGCCTTAGGTGTACC TTATCACTACCTCAGCCACCCCATCATCGACCAAGCCAAGATCCAGCTCC AAGGAGACTCCCTCTGCTCTTTCTGCAGCAGAATGAAGAGGGGCTTGCTC TACACTTGCTGTGTAGAGCATAATTACAATAAGCTGATCCTCGCCCAGCA CCTGGACGACGTCATCGAGTCCTTGTTCATGTCCCTCATGCACAACGGAC AGACCCGTACGATGAAGGCGCACTACACCGGCGAGCGTGGAGTCCGAGTC ATTCGGCCCCTCATCTACACCCGCGAAGGCGAGACCAAAGCCTTTGCCAC CTCCAATCGCCTGCCCATCATCAACGAAAATTGTCCTGCATGTTTCGAGC AGCCCAAGGAGCGAGCCCGAATGAAGAAAATGCTGAGCAAGGAGGAGTCT CTCATGCCACGGATGTACTCCAACCTCCGCCGGGGCATCATCCCACTGCT CGACGAGGACATGTACAACGTCATCCAGAGCAAGTACGCCGCCATTGAAG AGCGGATCAAGCACCGGAAGGCCAACAAGGCAGTTGTGGCTACCAAAGGA AAAAAGAAGGAGGGAGAGGGGGAGAGGGAGGAGGGGGAGGAAGAGAAGGA GGGAGGGGAGGGGAAGGAGGTAGGGAGAGGGGGGAGGGAGGGAGGGAGGG AGGGGACGAGGGAGGACGCGATGGGGAAGGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA GGAGGAGGAGGGATTGAAAGGGACGGGATGTGAGGGTGGGGTGTGCTTGG GAATGATGGTGGACGAGGAGAGTGGGCAGAGGGAGTAGAGGGGGAGGGGC AGGTAAGGAGGGAAGGAGGGTGGTTTGGCATTTGTAGCGGTAGGTTGAAA TGAATTGTGGGATTGATTTGTATTAGAAAGAATGATTTTGGGATTGATTT GTATTAGAAAGAATGATTGTG back to top protein sequence of NO03G00680.1
>NO03G00680.1-protein ID=NO03G00680.1-protein|Name=NO03G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=696bp MIVRGQHSSSSTSSSSSSSSSSFSGGCSYGSGKLRPRPCFLDRESPRYQY RELIHEPLHPPSRRPSIPSSVFLPSRALPSSLPPSHSSSFPSSAPTDYRE LTSLRGQQQIQQQQQQQQLQQKKRPSDEQMSHLTANLKRIATFRRGGVGL GALRPASSALPLSRHPPPPSSSSSSSPSSSSSSLVSTSNGVGPFAIPPFR GGGKESGKEGGRMQIEREGEVSAATRRMEARREEGEERVAQQVLGLEGGM PAKRHGHSSSSSTTSPSQATPAPTLSVQKQKYPLRTSNGSSSSSSSSNNN NKNNNNNSMTSLCFRPPLPSASSLPPSLPLTLFPSIPKRILKTVGEAIRD WDMINEGDRLCLGLSGGKDSLTLLHVLLHLQKKAPIRFSISCATVDPQTP SFDPSPLIPYVKALGVPYHYLSHPIIDQAKIQLQGDSLCSFCSRMKRGLL YTCCVEHNYNKLILAQHLDDVIESLFMSLMHNGQTRTMKAHYTGERGVRV IRPLIYTREGETKAFATSNRLPIINENCPACFEQPKERARMKKMLSKEES LMPRMYSNLRRGIIPLLDEDMYNVIQSKYAAIEERIKHRKANKAVVATKG KKKEGEGEREEGEEEKEGGEGKEVGRGGREGGREGTREDAMGKEEEEEEE EEEEEEEEEEEEEEEEEEEEGLKGTGCEGGVCLGMMVDEESGQRE* back to top mRNA from alignment at chr3:216990..220737-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00680.1 ID=NO03G00680.1|Name=NO03G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=3748bp|location=Sequence derived from alignment at chr3:216990..220737- (Nannochloropsis oceanica)ATGATAGTGCGGGGACAGCATTCTTCCTCCTCCACCTCCTCCTCCTCGTC
GTCGTCCTCCTCCTCCTTTTCCGGCGGGTGCTCTTATGGATCGGGGAAGC
TCCGTCCGCGGCCGTGTTTCTTGGATCG GTACGTCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTTCCTCCCTCTCAGTGTTACTCAACTTCATTTT
TCATCCTTCCTCCTTCCCTTTCCACCGCCCCTCCCTCCGTCCCTTCCTCC
TCCCCCTTCCCCCCCCCCAGCGAATCGCCTCGCTACCAGTACCGAGAGCT
GATCCATGAGCCACTCCACCCTCCCTCCCGCCGTCCCTCTATCCCTTCCT
CCGTCTTCCTCCCCTCGCGCGCCCTCCCTTCCTCTCTCCCTCCTTCCCAC
TCTTCCTCCTTCCCGTCCTCCGCACCAACCGACTATCGAGAACTCACATC
CCTCCGAGGGCAGCAGCAGATTCAACAGCAGCAGCAACAGCAGCAGCTTC
AACAGAAGAAACGGCCGTCGGATGAACAGATGTCTCATTTAACGGCTAAC
TTGAAACGGATTGCGACCTTTCGCCG GTAGGTGGAGAGAAGGAGGGAGGG
AGGGAAGGAGGGAAGGAGGGAGCGAAGGAAGGAAGGAGGAAGGGAGGGAG
GACATCATTCGCGCAATTTCGTCATTTCCCCCCTCATGTCTCTTCTGTCT
CTCTCTCCCTCCCTCCCTCCCTCCCTCCCTTCTCAGTGGTGGCGTTGGCC
TGGGCGCTCTGCGGCCTGCATCATCTGCCCTCCCCCTCTCCCGCCATCCT
CCTCCTCCCTCCTCCTCGTCTTCCTCCTCCCCCTCTTCCTCCTCCTCGTC
CCTTGTTTCCACATCCAACGGCGTCGGCCCATTTGCCATTCCTCCATTCC
GAGGAGGAGGGAAGGAGAGCGGGAAGGAGGGCGGGCGAATGCAGATCGAG
AGGGAAGGAGAGGTGTCTGCGGCGACGAGAAGGATGGAGGCACGGAGGGA
GGAAGGAGAGGAGAGGGTTGCACAGCAGGTGCTTGGCCTAGAGGGTGGGA
TGCCCGCCAAACGACATG GTAAGGAGGAAGGAAGGGTGGGAGGGCGGGAG
GGAGGGAGAAGGAGCCTGGAGAAAGGGATAAAGAGATTCCACCGCTTACA
TCCCTGCCCTCTTTTCTACCTCCTCCCCTCCCTCCCTCCCTCCCTCCCCC
CCTTCCTCCGTTCCTCCCTCCCTCCCTTCTCTTCCCTACAGGTCACTCCT
CCTCCTCCTCCACCACCTCCCCTTCCCAAGCCACGCCAGCCCCCACCCTT
TCGGTCCAAAAACAAAAATACCCTCTCCGTACCAGCAACGGCAGCAGCAG
CAGCAGCAGCAGCAGCAACAACAACAACAAGAACAACAACAACAACAGCA
TGACCTCCCTCTGCTTCCGCCCCCCGCTCCCCTCTGCCTCCTCCCTCCCC
CCCTCCCTCCCCCTCACCCTCTTCCCCTCCATTCCCAAGAGGATCCTCAA
GACCGTAGGGGAGGCCATCAGGGACTGGGATATGATAAACGAG GTGAGGG
AAGGAGAAAGGAATTGCGGATTATGAAAATCCTAATTCAATTAAATTAGC
CTAATAGAACGATCTTAATTTGTAAACTGCCAACAGAACCCAGTTTGATT
ATCTAAATCTGTTCCATTACCAACATCAGGGGGATCGGCTATGCCTAGGC
TTGAGCGGGGGCAAGGACTCCCTCACCCTCCTGCACGTGCTACTCCACCT
CCAG GTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTGCCTCCATCTCGCTTACCCCTCCCTGCTCCCCTCCCCCCTCC
CTCAGAAAAAAGCACCCATCCGCTTCAGCATCAGCTGTGCTACTGTGGAC
CCCCAAACGCCCTCCTTCGATCCCTCCCCCCTCATCCCCTACGTGAAGGC
CTTAGGTGTACCTTATCACTACCTCAGCCACCCCATCATCGACCAAGCCA
AG GTACACCCTCCCTCCCTCCTTCCCTTTCTCCTTCCTTTGCTTCCCTTC
CCCCCTTTCCCGCAGCCATCATCGTCTTTTTTCCTTCTTTCTTGACTCTT
CTTTCTTCTCCCTCCTCTATCCCTCTCCCTCCCTCCCTTCCTCTTTCCCT
TCCTCCTTTCACTTTTTCTCTTACCTCCCTCCGCTCCCTTCACCCTCACT
CCCTCCCTTCCTCTTGTTCTCTCTCCTCTATCCCTCTCCCCCCTCCCTTC
CTCTTTCCCTCCCTCCTTTCACTTTTTCTCTTCCCTCCCTCCCCCCCCTT
TCCCCCCCTCCCTCCCTCCCTCCCTCAGATCCAGCTCCAAGGAGACTCCC
TCTGCTCTTTCTGCAGCAGAATGAAGAGGGGCTTGCTCTACACTTGCTGT
GTAGAGCATAATTACAATAAGCTGATCCTCGCCCAGCACCTGGACGACGT
CATCGAGTCCTTGTTCATGTCCCTCATGCACAACGGACAG GTAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGTCGGCAGCGCCATCCACCC
TGCGATCTACATGCCACGCGAGGAGGATCAAACTGGTCTCTTGTCCCTCC
CTCCTTCCCCTCCTCCTTCCGCAGACCCGTACGATGAAGGCGCACTACAC
CGGCGAGCGTGGAGTCCGAGTCATTCGGCCCCTCATCTACACCCGCGAAG
GCGAGACCAAAGCCTTTGCCACCTCCAATCGCCTGCCCATCATCAACGAA
AATTGTCCTGCATGTTTCGAGCAGCCCAAG GTAAGGATGAGGCTTGGGGC
CCCTCCCTCCCTCCCTCCACTTCCCCCTACCCGCTCTTTTTTCTTCTTTC
CCCCCTCCGGTTTCTCCTTGTCCGGCCGCGTTGTCTCCTCGTCTCTCTTT
TTCTCCTTGACCATAAATTGATTCCCCCCTCCCTGCCCCCCTCCCCCCCT
CCCTCCCTTCCTCCCTCCCTCCCAGGAGCGAGCCCGAATGAAGAAAATGC
TGAGCAAGGAGGAGTCTCTCATGCCACGGATGTACTCCAACCTCCGCCGG
GGCATCATCCCACTGCTCGACGAGGACATGTACAACGTCATCCAG GCACG
TACCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCT
CCTTCCCTCCAACTGTCCGTGCACTCTGCGCGTTCTGTCCCGCTGGCCTA
GACCTCCTCATTCCCTCTCTCGTTTCCCCCCCTCGTTTCCCCCCCTCCCT
CGCAGAGCAAGTACGCCGCCATTGAAGAGCGGATCAAGCACCGGAAGGCC
AACAAGGCAGTTGTGGCTACCAAAGGAAAAAAGAAGGAGGGAGAGGGGGA
GAGGGAGGAGGGGGAGGAAGAGAAGGAGGGAGGGGAGGGGAAGGAGGTAG
GGAGAGGGGGGAGGGAGGGAGGGAGGGAGGGGACGAGGGAGGACGCGATG
GGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGATTGAAAGGGA
CGGGATGTGAGGGTGGGGTGTGCTTGGGAATGATGGTGGACGAGGAGAGT
GGGCAGAGGGAGTAG AGGGGGAGGGGCAGGTAAGGAGGGAAGGAGGGTGG
TTTGGCATTTGTAGCGGTAGGTTGAAATGAATTGTGGGATTGATTTGTAT
TAGAAAGAATGATTTTGGGATTGATTTGTATTAGAAAGAATGATTGTG back to top Coding sequence (CDS) from alignment at chr3:216990..220737-
>NO03G00680.1 ID=NO03G00680.1|Name=NO03G00680.1|organism=Nannochloropsis oceanica|type=CDS|length=2088bp|location=Sequence derived from alignment at chr3:216990..220737- (Nannochloropsis oceanica) ATGATAGTGCGGGGACAGCATTCTTCCTCCTCCACCTCCTCCTCCTCGTC GTCGTCCTCCTCCTCCTTTTCCGGCGGGTGCTCTTATGGATCGGGGAAGC TCCGTCCGCGGCCGTGTTTCTTGGATCGCGAATCGCCTCGCTACCAGTAC CGAGAGCTGATCCATGAGCCACTCCACCCTCCCTCCCGCCGTCCCTCTAT CCCTTCCTCCGTCTTCCTCCCCTCGCGCGCCCTCCCTTCCTCTCTCCCTC CTTCCCACTCTTCCTCCTTCCCGTCCTCCGCACCAACCGACTATCGAGAA CTCACATCCCTCCGAGGGCAGCAGCAGATTCAACAGCAGCAGCAACAGCA GCAGCTTCAACAGAAGAAACGGCCGTCGGATGAACAGATGTCTCATTTAA CGGCTAACTTGAAACGGATTGCGACCTTTCGCCGTGGTGGCGTTGGCCTG GGCGCTCTGCGGCCTGCATCATCTGCCCTCCCCCTCTCCCGCCATCCTCC TCCTCCCTCCTCCTCGTCTTCCTCCTCCCCCTCTTCCTCCTCCTCGTCCC TTGTTTCCACATCCAACGGCGTCGGCCCATTTGCCATTCCTCCATTCCGA GGAGGAGGGAAGGAGAGCGGGAAGGAGGGCGGGCGAATGCAGATCGAGAG GGAAGGAGAGGTGTCTGCGGCGACGAGAAGGATGGAGGCACGGAGGGAGG AAGGAGAGGAGAGGGTTGCACAGCAGGTGCTTGGCCTAGAGGGTGGGATG CCCGCCAAACGACATGGTCACTCCTCCTCCTCCTCCACCACCTCCCCTTC CCAAGCCACGCCAGCCCCCACCCTTTCGGTCCAAAAACAAAAATACCCTC TCCGTACCAGCAACGGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAAC AACAAGAACAACAACAACAACAGCATGACCTCCCTCTGCTTCCGCCCCCC GCTCCCCTCTGCCTCCTCCCTCCCCCCCTCCCTCCCCCTCACCCTCTTCC CCTCCATTCCCAAGAGGATCCTCAAGACCGTAGGGGAGGCCATCAGGGAC TGGGATATGATAAACGAGGGGGATCGGCTATGCCTAGGCTTGAGCGGGGG CAAGGACTCCCTCACCCTCCTGCACGTGCTACTCCACCTCCAGAAAAAAG CACCCATCCGCTTCAGCATCAGCTGTGCTACTGTGGACCCCCAAACGCCC TCCTTCGATCCCTCCCCCCTCATCCCCTACGTGAAGGCCTTAGGTGTACC TTATCACTACCTCAGCCACCCCATCATCGACCAAGCCAAGATCCAGCTCC AAGGAGACTCCCTCTGCTCTTTCTGCAGCAGAATGAAGAGGGGCTTGCTC TACACTTGCTGTGTAGAGCATAATTACAATAAGCTGATCCTCGCCCAGCA CCTGGACGACGTCATCGAGTCCTTGTTCATGTCCCTCATGCACAACGGAC AGACCCGTACGATGAAGGCGCACTACACCGGCGAGCGTGGAGTCCGAGTC ATTCGGCCCCTCATCTACACCCGCGAAGGCGAGACCAAAGCCTTTGCCAC CTCCAATCGCCTGCCCATCATCAACGAAAATTGTCCTGCATGTTTCGAGC AGCCCAAGGAGCGAGCCCGAATGAAGAAAATGCTGAGCAAGGAGGAGTCT CTCATGCCACGGATGTACTCCAACCTCCGCCGGGGCATCATCCCACTGCT CGACGAGGACATGTACAACGTCATCCAGAGCAAGTACGCCGCCATTGAAG AGCGGATCAAGCACCGGAAGGCCAACAAGGCAGTTGTGGCTACCAAAGGA AAAAAGAAGGAGGGAGAGGGGGAGAGGGAGGAGGGGGAGGAAGAGAAGGA GGGAGGGGAGGGGAAGGAGGTAGGGAGAGGGGGGAGGGAGGGAGGGAGGG AGGGGACGAGGGAGGACGCGATGGGGAAGGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA GGAGGAGGAGGGATTGAAAGGGACGGGATGTGAGGGTGGGGTGTGCTTGG GAATGATGGTGGACGAGGAGAGTGGGCAGAGGGAGTAG back to top