NO03G00630.2, NO03G00630.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00630.2
Unique NameNO03G00630.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2457
Alignment locationchr3:198890..202395 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:198890..202395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00630.2 vs.
Match: CBJ29939.1 (RNA pseudouridylate synthase domain containing 1 [Ectocarpus siliculosus])

HSP 1 Score: 155.2 bits (391), Expect = 5.000e-34
Identity = 116/348 (33.33%), Postives = 165/348 (47.41%), Query Frame = 0 
Query:   90 PLKVLYRKHDLLVIDKPPDVRMQGAFVVTVENLVRHYCPLDAPPSLALKYIHQLDYATSGVLCLGLSRKAAAATAELFMNRQTEKEYVALVEGHLDPSLLPVLDDVSESDDPALTSSSLPPSAYLPGIHPEAGGRGR----GGKGRGRKEGSRGVIYKPASTYYRDKQLALERRKRKEEEEGGGQEDGWTEEERRVLGGMKWKEAKRTLKDISAECEALSAADKEAKLAGLAPLPPPSLPPSKDLGAFRRKGEGKGAFVVDVAITEFKHDFRVRLGLPPPPPPPPPPASSPSASSPSLPPPARRARTHGLVVGYGRCEGKAVTKIRLRPISGRRHQLRVHCLHLGHPI 434
            P + L    D +VI+KP DVRM G F V V+ L+R++CP        LK++HQLD+ATSGVLC+ L R+AAA   E F  R+ +K Y+A+V+G +DP  +P  ++                        PE  G GR    GG G GRK     V + PA  +++ K+  L R     E             E      + W + K   K  S    + + ADK   +A        +   + D G FR  G+G+G   VD +++E   DFR+RL                 A     P     +RT   V+ +G   G++VTK+ +RP +GRRHQLR+H LH+GHPI
Sbjct:   43 PTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCP--TLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREE-----------------------EPEGWGEGRDGNGGGGGGGRKRRPDSVQHTPAHGFFQRKKDLLLRAIELGET---------LSPEDLAFSKLSWGDIKFD-KAASRPFHSAAKADKIRAVAEAEAARFQTAQGAPDRGVFRAPGDGEGELRVDASVSEVPGDFRMRL--------------DEEAGGKGKP-----SRTFVKVLEHGSYRGRSVTKVLMRPHTGRRHQLRLHALHMGHPI 336
The following BLAST results are available for this feature:
BLAST of NO03G00630.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ29939.15.000e-3433.33RNA pseudouridylate synthase domain containing 1 [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00630NO03G00630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00630.2NO03G00630.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00630.2.cds1NO03G00630.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00630.2.cds2NO03G00630.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00630.2.cds3NO03G00630.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00630.2.cds4NO03G00630.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00630.2.cds5NO03G00630.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00630.2.cds6NO03G00630.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00630.2 ID=NO03G00630.2|Name=NO03G00630.2|organism=Nannochloropsis oceanica|type=mRNA|length=2457bp
ATGTCATCTCCTAGTCTCGCCAGTGCCATAAGATCTGCACCCCCGGTGAC
CTGTGCTTCCAATCCAACAATGACAGTGAGCAATCATACGACGAGGAGGA
CCGCTCTCCCCACCACCACCGCTACTACCCTCACGACCAGCAGCGTTATC
ATTCCCACCCGCGGGCAGGCTGAGCTGGACAAGCATAACACGGGAGAGGG
AGACGATGTCAATCTGAAAGGAAAGGGAGACAGAAGGTCGGAGCCACGCA
CGTTGGAGGAGGCAGGGCCGTTGAAGGTGTTGTACAGGAAGCATGACCTG
CTGGTGATCGATAAGCCCCCAGACGTTCGCATGCAAGGTGCCTTCGTCGT
AACGGTCGAGAACCTCGTCCGTCACTACTGCCCCCTCGATGCGCCTCCCT
CACTCGCCCTCAAGTACATCCACCAACTGGACTACGCGACCTCGGGTGTG
CTTTGCTTGGGCCTCAGCCGCAAGGCTGCTGCCGCCACCGCAGAGCTGTT
TATGAACCGTCAGACGGAGAAGGAATATGTGGCCCTGGTGGAGGGACACC
TTGACCCCTCCCTCCTTCCCGTCCTCGACGACGTATCGGAATCGGACGAC
CCAGCGCTCACCTCGTCCTCTCTTCCTCCCTCCGCCTATCTGCCGGGCAT
CCACCCGGAGGCGGGAGGGAGGGGGAGGGGGGGGAAGGGGAGGGGGAGGA
AGGAGGGCTCGAGGGGAGTGATTTACAAGCCGGCGTCGACCTACTACAGA
GATAAGCAGCTGGCGCTCGAGAGGAGGAAGAGAAAGGAGGAAGAGGAGGG
GGGAGGGCAGGAGGACGGGTGGACGGAGGAGGAGCGGAGGGTTTTGGGGG
GCATGAAGTGGAAAGAGGCCAAGCGCACGTTAAAGGACATCTCCGCCGAA
TGTGAAGCTCTGTCTGCCGCCGACAAAGAGGCGAAATTAGCCGGCCTAGC
GCCCTTGCCCCCTCCCTCCCTCCCTCCCTCGAAGGACCTGGGAGCGTTTC
GGAGGAAGGGGGAGGGGAAAGGCGCGTTTGTGGTGGATGTGGCCATCACG
GAGTTCAAACACGACTTCCGGGTCCGACTTGGCCTCCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTGCGTCCTCCCCTTCCGCCTCCTCTCCCTCCCTCC
CTCCCCCCGCCCGTCGCGCTCGTACGCACGGCCTGGTGGTGGGCTACGGC
CGCTGTGAAGGGAAGGCGGTGACCAAGATACGGCTGCGGCCCATATCAGG
GCGACGACACCAGCTCCGTGTCCACTGCCTGCATCTGGGGCACCCGATAG
GTGAGGAGGGAGGGAGGGAGGACTCTTCGCGAGCTGCCTCGGCTATATTG
CCCGTACGTACTGTCTCTCCTCACTCCCTCTTTCCCTCCCACTTTCCCTC
CCTTCCTTTCTCTAGTTGGAGATAGCACCTACGGCGGAGACACCACCTCG
CCTCGGATGATGCTTCACGCCCTCGCGCTCACGCTCCCCTTCCCCGCGGG
CAAGGGCCCGGGTATGACATTGACCATCCGCACCCATGACCCCTTCGACG
GGAAGTACTTTGAGCCTCTCTGAAAGAGGGAGGGAGGGAGGGAGGGAGGG
AGGAAGGAAGGGAGGAAACAGGAACAGCAATATACATTAGAAGGGAAGAC
AGAGGGAGAAGAAGAGAGATTCAGGAAGAGACAAAAAGAGAGAGACCACT
TGTATGTATTTATACATCTATATCAAGAAGGAGAATAGCTACAGCTAAAT
TAGGGCAGGATGTGTAAATCTAAGAGGGGAAAAAGCAGGAGAGGGGGAAT
AGCGATGTGTGTAAAATTTCGAGCAGAGATAACGAAGGGAGAGAGGAGGA
AAGATGGATGAAAGGAGGGAGGGAGGGAAGGAGAGGTACGGGTAAGCAAA
TTCTAAAGGCTATGACAGTGCGGGGAAAAGGTGATGATTAAGAGAGAGGA
TGAAAGCAGGGGAAGACCATCAGCAGAAGCCACGCAGGAAGAGGAGGAGA
GATGGTCGTGAGGAGGAGGAAAGAAACTTAATGCATCGACTATGACTTGC
TTAGGCTCAACTGGTTGAAGACAGAGGGGCTGCGAGAGATAAATAAGGAG
GAGGTAGGTCTCGCGGTGGTGGGTGTCACACACATACACGCACACACAAA
CACACACACACATACACACACACACACACATACACACACATGTATGTGTA
CAAAGGGAGAGGCTGTTCTGAGGGGGTAAAGTACACACACATATACATGA
GTCATAGAAAGACAGCGGTGAGGAGGAGGAGGGTGGAGGGAGCTCATGCC
ACGACTTGAGCACCCAAATGCCCCATGGGCCATATGGATACGAAGAAACA
AAAGCGATTAAAGAAAGAGGAAAAAATCAAGAAGAAGGAAGAGAGAAAGA
AGGTAGAGAGGCAGAAAAAGAATAGACGGAAAAGGAGAATGCTTACGACT
TGTTTAG
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protein sequence of NO03G00630.2

>NO03G00630.2-protein ID=NO03G00630.2-protein|Name=NO03G00630.2|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MSSPSLASAIRSAPPVTCASNPTMTVSNHTTRRTALPTTTATTLTTSSVI
IPTRGQAELDKHNTGEGDDVNLKGKGDRRSEPRTLEEAGPLKVLYRKHDL
LVIDKPPDVRMQGAFVVTVENLVRHYCPLDAPPSLALKYIHQLDYATSGV
LCLGLSRKAAAATAELFMNRQTEKEYVALVEGHLDPSLLPVLDDVSESDD
PALTSSSLPPSAYLPGIHPEAGGRGRGGKGRGRKEGSRGVIYKPASTYYR
DKQLALERRKRKEEEEGGGQEDGWTEEERRVLGGMKWKEAKRTLKDISAE
CEALSAADKEAKLAGLAPLPPPSLPPSKDLGAFRRKGEGKGAFVVDVAIT
EFKHDFRVRLGLPPPPPPPPPPASSPSASSPSLPPPARRARTHGLVVGYG
RCEGKAVTKIRLRPISGRRHQLRVHCLHLGHPIGEEGGREDSSRAASAIL
PVRTVSPHSLFPSHFPSLPFSSWR*
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mRNA from alignment at chr3:198890..202395-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00630.2 ID=NO03G00630.2|Name=NO03G00630.2|organism=Nannochloropsis oceanica|type=mRNA|length=3506bp|location=Sequence derived from alignment at chr3:198890..202395- (Nannochloropsis oceanica)
ATGTCATCTCCTAGTCTCGCCAGTGCCATAAGATCTGCACCCCCGGTGAC
CTGTGCTTCCAATCCAACAATGACAGTGAGCAATCATACGACGAGGTACG
TGCCCTACACCATACACATCTCTCTCTCAAGCGAGTGCGGTACCATGTCA
CTTGTTTCAATGATTTTATACCTCCATTAGCTCATGGTATTTCCTCTCCC
CCCTCCCCCTTTCCTCCACCCCGCACGCGTAGGAGGACCGCTCTCCCCAC
CACCACCGCTACTACCCTCACGACCAGCAGCGTTATCATTCCCACCCGCG
GGCAGGCTGAGCTGGACAAGCATAACACGGGAGAGGGAGACGATGTCAAT
CTGAAAGGAAAGGGAGACAGAAGGTCGGAGCCACGCACGTTGGAGGAGGC
AGGGCCGTTGAAGGTGTTGTACAGGAAGCATGACCTGCTGGTGATCGATA
AGGCGAGTGCAAGACAGAGTTTGTTAGAAACGAAAAGGAGGGAGGGCTTC
AAAAATGGCGAAGATGGAGAGTAAATAATGCAAACGGGTCCAAGGCCGAC
ATTTCATGCGCCCAAAGGCAGCCACTGCCGAATACACGTTCACTTATTCC
TCCCTCCCTCCCTCCTTCCCTTTTTCCCTTCTTCCCTCCTCCCTAGCCCC
CAGACGTTCGCATGCAAGGTGCCTTCGTCGTAACGGTCGAGAACCTCGTC
CGTCACTACTGCCCCCTCGATGCGCCTCCCTCACTCGCCCTCAAGTACAT
CCACCAACTGGACTACGCGACCTCGGGTGTGCTTTGCTTGGGCCTCAGCC
GCAAGTGAGGAGGGAGAGAGGGAGGGAGGAAGGGAGAAAGGGTGGAACGA
GAGCTAGGATATCTTCCAATACATGATTTCCATCTGACGTCGAACGCCTT
TTTTTGTCTCCCTTCCCTTGTCATAGGGCTGCTGCCGCCACCGCAGAGCT
GTTTATGAACCGTCAGACGGAGAAGGAATATGTGGCCCTGGTGGAGGGAC
ACCTTGACCCCTCCCTCCTTCCCGTCCTCGACGACGTATCGGAATCGGAC
GACCCAGCGCTCACCTCGTCCTCTCTTCCTCCCTCCGCCTATCTGCCGGG
CATCCACCCGGAGGCGGGAGGGAGGGGGAGGGGGGGGAAGGGGAGGGGGA
GGAAGGAGGGCTCGAGGGGAGTGATTTACAAGCCGGCGTCGACCTACTAC
AGAGATAAGCAGCTGGCGCTCGAGAGGAGGAAGAGAAAGGAGGAAGAGGA
GGGGGGAGGGCAGGAGGACGGGTGGACGGAGGAGGAGCGGAGGGTTTTGG
GGGGCATGAAGTGGAAAGAGGCCAAGCGCACGTTAAAGGGTCAGCTTAGG
GAGGGGGGAAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GAGGGAAAGGGATGGATGCTTCGATCTCTTTTCATCCTATCAATCCCAGT
ATACGTATGACTGTCTGTGTACATACATACATACATACAGTCATGCATGC
CTACGTATAAATCTGTATATAATTTATGCTCATCGTGATCTTCTCCCTTT
TTCAGACATCTCCGCCGAATGTGAAGCTCTGTCTGCCGCCGACAAAGAGG
CGAAATTAGCCGGCCTAGCGCCCTTGCCCCCTCCCTCCCTCCCTCCCTCG
AAGGACCTGGGAGCGTTTCGGAGGAAGGGGGAGGGGAAAGGCGCGTTTGT
GGTGGATGTGGCCATCACGGAGGTAGGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGCGATAGGGAGTTGGGACGGGAAAGATAACTCCG
TGGGGAGGGAGGAAAAAAAGGAGAGAGGGAAGGAGGAAGGGAGGGAGGGA
GGGAGGGAGGAATGGCTGAGAGAAAACTGACTTGTCCTCTTCCTTTCCTC
CTCCATGCCCTCCTGCCACAATCACCACACAGTTCAAACACGACTTCCGG
GTCCGACTTGGCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCGTC
CTCCCCTTCCGCCTCCTCTCCCTCCCTCCCTCCCCCCGCCCGTCGCGCTC
GTACGCACGGCCTGGTGGTGGGCTACGGCCGCTGTGAAGGGAAGGCGGTG
ACCAAGATACGGCTGCGGCCCATATCAGGGCGACGACACCAGCTCCGTGT
CCACTGCCTGCATCTGGGGCACCCGATAGGTGAGGAGGGAGGGAGGGAGG
ACTCTTCGCGAGCTGCCTCGGCTATATTGCCCGTACGTACTGTCTCTCCT
CACTCCCTCTTTCCCTCCCACTTTCCCTCCCTTCCTTTCTCTAGTTGGAG
ATAGCACCTACGGCGGAGACACCACCTCGCCTCGGATGATGCTTCACGCC
CTCGCGCTCACGCTCCCCTTCCCCGCGGGCAAGGTGTGTCATCTCCTCTT
CCCTCCATCTCCCCCTCCCTTCCTCCCTCTTTCTCTCTTTTCTTCTCTTC
CTCGCATGTCCTTTCAGCTCTTCCCCGTACTCACACTTTCTTTTGCCCTC
CTCTCCTCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCT
CAGGGCCCGGGTATGACATTGACCATCCGCACCCATGACCCCTTCGACGG
GAAGTACTTTGAGCCTCTCTGAAAGAGGGAGGGAGGGAGGGAGGGAGGGA
GGAAGGAAGGGAGGAAACAGGAACAGCAATATACATTAGAAGGGAAGACA
GAGGGAGAAGAAGAGAGATTCAGGAAGAGACAAAAAGAGAGAGACCACTT
GTATGTATTTATACATCTATATCAAGAAGGAGAATAGCTACAGCTAAATT
AGGGCAGGATGTGTAAATCTAAGAGGGGAAAAAGCAGGAGAGGGGGAATA
GCGATGTGTGTAAAATTTCGAGCAGAGATAACGAAGGGAGAGAGGAGGAA
AGATGGATGAAAGGAGGGAGGGAGGGAAGGAGAGGTACGGGTAAGCAAAT
TCTAAAGGCTATGACAGTGCGGGGAAAAGGTGATGATTAAGAGAGAGGAT
GAAAGCAGGGGAAGACCATCAGCAGAAGCCACGCAGGAAGAGGAGGAGAG
ATGGTCGTGAGGAGGAGGAAAGAAACTTAATGCATCGACTATGACTTGCT
TAGGCTCAACTGGTTGAAGACAGAGGGGCTGCGAGAGATAAATAAGGAGG
AGGTAGGTCTCGCGGTGGTGGGTGTCACACACATACACGCACACACAAAC
ACACACACACATACACACACACACACACATACACACACATGTATGTGTAC
AAAGGGAGAGGCTGTTCTGAGGGGGTAAAGTACACACACATATACATGAG
TCATAGAAAGACAGCGGTGAGGAGGAGGAGGGTGGAGGGAGCTCATGCCA
CGACTTGAGCACCCAAATGCCCCATGGGCCATATGGATACGAAGAAACAA
AAGCGATTAAAGAAAGAGGAAAAAATCAAGAAGAAGGAAGAGAGAAAGAA
GGTAGAGAGGCAGAAAAAGAATAGACGGAAAAGGAGAATGCTTACGACTT
GTTTAG
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Coding sequence (CDS) from alignment at chr3:198890..202395-

>NO03G00630.2 ID=NO03G00630.2|Name=NO03G00630.2|organism=Nannochloropsis oceanica|type=CDS|length=1425bp|location=Sequence derived from alignment at chr3:198890..202395- (Nannochloropsis oceanica)
ATGTCATCTCCTAGTCTCGCCAGTGCCATAAGATCTGCACCCCCGGTGAC
CTGTGCTTCCAATCCAACAATGACAGTGAGCAATCATACGACGAGGAGGA
CCGCTCTCCCCACCACCACCGCTACTACCCTCACGACCAGCAGCGTTATC
ATTCCCACCCGCGGGCAGGCTGAGCTGGACAAGCATAACACGGGAGAGGG
AGACGATGTCAATCTGAAAGGAAAGGGAGACAGAAGGTCGGAGCCACGCA
CGTTGGAGGAGGCAGGGCCGTTGAAGGTGTTGTACAGGAAGCATGACCTG
CTGGTGATCGATAAGCCCCCAGACGTTCGCATGCAAGGTGCCTTCGTCGT
AACGGTCGAGAACCTCGTCCGTCACTACTGCCCCCTCGATGCGCCTCCCT
CACTCGCCCTCAAGTACATCCACCAACTGGACTACGCGACCTCGGGTGTG
CTTTGCTTGGGCCTCAGCCGCAAGGCTGCTGCCGCCACCGCAGAGCTGTT
TATGAACCGTCAGACGGAGAAGGAATATGTGGCCCTGGTGGAGGGACACC
TTGACCCCTCCCTCCTTCCCGTCCTCGACGACGTATCGGAATCGGACGAC
CCAGCGCTCACCTCGTCCTCTCTTCCTCCCTCCGCCTATCTGCCGGGCAT
CCACCCGGAGGCGGGAGGGAGGGGGAGGGGGGGGAAGGGGAGGGGGAGGA
AGGAGGGCTCGAGGGGAGTGATTTACAAGCCGGCGTCGACCTACTACAGA
GATAAGCAGCTGGCGCTCGAGAGGAGGAAGAGAAAGGAGGAAGAGGAGGG
GGGAGGGCAGGAGGACGGGTGGACGGAGGAGGAGCGGAGGGTTTTGGGGG
GCATGAAGTGGAAAGAGGCCAAGCGCACGTTAAAGGACATCTCCGCCGAA
TGTGAAGCTCTGTCTGCCGCCGACAAAGAGGCGAAATTAGCCGGCCTAGC
GCCCTTGCCCCCTCCCTCCCTCCCTCCCTCGAAGGACCTGGGAGCGTTTC
GGAGGAAGGGGGAGGGGAAAGGCGCGTTTGTGGTGGATGTGGCCATCACG
GAGTTCAAACACGACTTCCGGGTCCGACTTGGCCTCCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTGCGTCCTCCCCTTCCGCCTCCTCTCCCTCCCTCC
CTCCCCCCGCCCGTCGCGCTCGTACGCACGGCCTGGTGGTGGGCTACGGC
CGCTGTGAAGGGAAGGCGGTGACCAAGATACGGCTGCGGCCCATATCAGG
GCGACGACACCAGCTCCGTGTCCACTGCCTGCATCTGGGGCACCCGATAG
GTGAGGAGGGAGGGAGGGAGGACTCTTCGCGAGCTGCCTCGGCTATATTG
CCCGTACGTACTGTCTCTCCTCACTCCCTCTTTCCCTCCCACTTTCCCTC
CCTTCCTTTCTCTAGTTGGAGATAG
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Synonyms
Publications