NO03G00560.1, NO03G00560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00560.1
Unique NameNO03G00560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1249
Alignment locationchr3:180998..182383 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:180998..182383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00560.1 vs.
Match: CBN75261.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 226.9 bits (577), Expect = 1.100e-55
Identity = 135/329 (41.03%), Postives = 181/329 (55.02%), Query Frame = 0 
Query:   32 HDDSIWSLAWTTHGQLLSGSVDETVKVWSIPPLSPTSLSPSSPPSAPPSLTLAHTLGEHRLGVVSVAASGRTPGLAVSCSLDSTLRFWNTLNGEKEGLGDVKAGAGEAWTVAWSPTASLVASGTQRGCVNVWEVGGIEEGREGGVAVLPSTVAMTLKTQSGKTGGGGGGKGGRKEASAPFIFSVAFSPDGSKLACGGSDGLVYVFDVETGALIASLQGHTKPVRSLAFTPTGYALLSASDDQRVNVHELASSSSLPSSSTARPPSLVATYEGHASFVLSVAASPDGRHFASGGADRKVKLWDLAMRECVHTVE-RHGEAVWALAFEPDG 360
            H++ IWS+AWT    +LSGSVDE  +VW       + L+P             H+L  HRLGV+SV A       AVS S+DS +RFW+  +GE+  + +   G  EAWT+A S    L+ASGTQ+G VN+W + G +                               K    E    F+ SVAFSPD   LA GG DGLV +FDVE   L   L+GH  P+RSL F+  G  L +ASDD RVNV+++ ++            SLVA++ GH S+VLSV   PDGRHFA+GG+D+ VK+WD+A +ECVHT +  H   VW++A+ P G
Sbjct:   12 HEEGIWSVAWTEADNILSGSVDERARVWC------SELAP------------VHSLNGHRLGVLSVRAFNHGKE-AVSSSIDSCIRFWDLESGEQTAVEE--PGPVEAWTLAVSTDDKLLASGTQKGSVNLWALDGHK-------------------------------KVASMETRDKFVMSVAFSPDNKYLASGGLDGLVNIFDVEQAKLHQKLEGHAMPIRSLCFSADGSLLFTASDDMRVNVYDVKNT------------SLVASFTGHTSWVLSVDCCPDGRHFATGGSDQTVKIWDMAAKECVHTFDSAHNNQVWSVAYSPAG 276
The following BLAST results are available for this feature:
BLAST of NO03G00560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN75261.11.100e-5541.03conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00560NO03G00560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00560.1NO03G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00560.1.cds1NO03G00560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00560.1.cds2NO03G00560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00560.1 ID=NO03G00560.1|Name=NO03G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1249bp
CACAGCTAGCCTCCCCACCCCCCGCCCTCTCTCCCCTCTTCCATCCTTCC
CTCATCGGCGGCAGCCACAGCAGCAAAAAGAACAGTGTCCGCAACATATG
GCGCGTCCTGACCCAAGCACCACCAACGGTAAAGGCGGCAGCAGCAGCAG
CAGCCCGTTGGAAGCCGGAACCACCACTTTGACGGGCCGCCACGATGACA
GCATCTGGAGTCTCGCATGGACAACCCACGGCCAACTCCTCTCCGGCTCC
GTTGACGAAACGGTCAAAGTGTGGTCTATCCCCCCTCTTTCCCCCACCTC
CCTCTCGCCTTCCTCCCCTCCTTCCGCCCCTCCCTCCCTAACTCTGGCAC
ATACCCTGGGAGAGCACCGATTGGGCGTGGTGTCGGTGGCGGCCAGCGGG
CGGACGCCGGGGCTTGCGGTCAGTTGTTCTCTGGATTCGACTTTGCGATT
TTGGAATACATTGAATGGAGAGAAAGAGGGGTTGGGGGACGTGAAAGCAG
GGGCAGGAGAAGCGTGGACAGTCGCTTGGTCGCCCACCGCATCTCTTGTT
GCCAGCGGTACGCAGAGGGGCTGTGTGAATGTGTGGGAGGTGGGAGGGAT
AGAGGAAGGGAGGGAGGGAGGAGTGGCGGTGCTCCCCTCAACGGTGGCAA
TGACGTTAAAGACCCAGTCGGGCAAGACCGGAGGTGGGGGAGGAGGGAAG
GGTGGACGGAAGGAGGCCAGTGCACCGTTTATTTTCAGCGTGGCTTTCTC
GCCGGACGGGAGTAAATTGGCGTGTGGGGGGAGCGATGGCTTGGTGTACG
TTTTTGACGTGGAGACAGGAGCTTTGATAGCTTCCCTACAGGGACACACC
AAGCCCGTTCGCTCCCTAGCCTTCACACCCACCGGCTACGCCCTCTTGAG
CGCCTCGGACGACCAGCGGGTGAATGTTCATGAGCTCGCCTCGTCCTCCT
CCTTGCCTTCCTCCTCGACGGCCCGCCCTCCCTCCCTGGTGGCCACTTAC
GAGGGCCATGCGTCGTTTGTGCTGAGTGTAGCTGCCAGCCCTGATGGACG
ACACTTTGCCTCGGGTGGAGCAGACAGGAAGGTAAAGCTGTGGGATCTGG
CAATGCGGGAATGTGTGCATACGGTGGAGAGACACGGGGAGGCAGTATGG
GCCTTGGCGTTTGAGCCGGATGGAAGGGGAGAGGGAGGGGGGGGGAGAGG
AGGTTGGCGAGTGGGGGGGAGGATGGGACGATGCTGGTGTTTGGAGTAG
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protein sequence of NO03G00560.1

>NO03G00560.1-protein ID=NO03G00560.1-protein|Name=NO03G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MARPDPSTTNGKGGSSSSSPLEAGTTTLTGRHDDSIWSLAWTTHGQLLSG
SVDETVKVWSIPPLSPTSLSPSSPPSAPPSLTLAHTLGEHRLGVVSVAAS
GRTPGLAVSCSLDSTLRFWNTLNGEKEGLGDVKAGAGEAWTVAWSPTASL
VASGTQRGCVNVWEVGGIEEGREGGVAVLPSTVAMTLKTQSGKTGGGGGG
KGGRKEASAPFIFSVAFSPDGSKLACGGSDGLVYVFDVETGALIASLQGH
TKPVRSLAFTPTGYALLSASDDQRVNVHELASSSSLPSSSTARPPSLVAT
YEGHASFVLSVAASPDGRHFASGGADRKVKLWDLAMRECVHTVERHGEAV
WALAFEPDGRGEGGGGRGGWRVGGRMGRCWCLE*
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mRNA from alignment at chr3:180998..182383+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00560.1 ID=NO03G00560.1|Name=NO03G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp|location=Sequence derived from alignment at chr3:180998..182383+ (Nannochloropsis oceanica)
CACAGCTAGCCTCCCCACCCCCCGCCCTCTCTCCCCTCTTCCATCCTTCC
CTCATCGGCGGCAGCCACAGCAGCAAAAAGAACAGTGTCCGCAACATATG
GTAAGACCAGCAGCAATATTCCCTCCATCCCCCCACCCCCACGCATACAT
CCTCAACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTGAAAGGCGCGTCCTGACC
CAAGCACCACCAACGGTAAAGGCGGCAGCAGCAGCAGCAGCCCGTTGGAA
GCCGGAACCACCACTTTGACGGGCCGCCACGATGACAGCATCTGGAGTCT
CGCATGGACAACCCACGGCCAACTCCTCTCCGGCTCCGTTGACGAAACGG
TCAAAGTGTGGTCTATCCCCCCTCTTTCCCCCACCTCCCTCTCGCCTTCC
TCCCCTCCTTCCGCCCCTCCCTCCCTAACTCTGGCACATACCCTGGGAGA
GCACCGATTGGGCGTGGTGTCGGTGGCGGCCAGCGGGCGGACGCCGGGGC
TTGCGGTCAGTTGTTCTCTGGATTCGACTTTGCGATTTTGGAATACATTG
AATGGAGAGAAAGAGGGGTTGGGGGACGTGAAAGCAGGGGCAGGAGAAGC
GTGGACAGTCGCTTGGTCGCCCACCGCATCTCTTGTTGCCAGCGGTACGC
AGAGGGGCTGTGTGAATGTGTGGGAGGTGGGAGGGATAGAGGAAGGGAGG
GAGGGAGGAGTGGCGGTGCTCCCCTCAACGGTGGCAATGACGTTAAAGAC
CCAGTCGGGCAAGACCGGAGGTGGGGGAGGAGGGAAGGGTGGACGGAAGG
AGGCCAGTGCACCGTTTATTTTCAGCGTGGCTTTCTCGCCGGACGGGAGT
AAATTGGCGTGTGGGGGGAGCGATGGCTTGGTGTACGTTTTTGACGTGGA
GACAGGAGCTTTGATAGCTTCCCTACAGGGACACACCAAGCCCGTTCGCT
CCCTAGCCTTCACACCCACCGGCTACGCCCTCTTGAGCGCCTCGGACGAC
CAGCGGGTGAATGTTCATGAGCTCGCCTCGTCCTCCTCCTTGCCTTCCTC
CTCGACGGCCCGCCCTCCCTCCCTGGTGGCCACTTACGAGGGCCATGCGT
CGTTTGTGCTGAGTGTAGCTGCCAGCCCTGATGGACGACACTTTGCCTCG
GGTGGAGCAGACAGGAAGGTAAAGCTGTGGGATCTGGCAATGCGGGAATG
TGTGCATACGGTGGAGAGACACGGGGAGGCAGTATGGGCCTTGGCGTTTG
AGCCGGATGGAAGGGGAGAGGGAGGGGGGGGGAGAGGAGGTTGGCGAGTG
GGGGGGAGGATGGGACGATGCTGGTGTTTGGAGTAG
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Coding sequence (CDS) from alignment at chr3:180998..182383+

>NO03G00560.1 ID=NO03G00560.1|Name=NO03G00560.1|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at chr3:180998..182383+ (Nannochloropsis oceanica)
ATGGCGCGTCCTGACCCAAGCACCACCAACGGTAAAGGCGGCAGCAGCAG
CAGCAGCCCGTTGGAAGCCGGAACCACCACTTTGACGGGCCGCCACGATG
ACAGCATCTGGAGTCTCGCATGGACAACCCACGGCCAACTCCTCTCCGGC
TCCGTTGACGAAACGGTCAAAGTGTGGTCTATCCCCCCTCTTTCCCCCAC
CTCCCTCTCGCCTTCCTCCCCTCCTTCCGCCCCTCCCTCCCTAACTCTGG
CACATACCCTGGGAGAGCACCGATTGGGCGTGGTGTCGGTGGCGGCCAGC
GGGCGGACGCCGGGGCTTGCGGTCAGTTGTTCTCTGGATTCGACTTTGCG
ATTTTGGAATACATTGAATGGAGAGAAAGAGGGGTTGGGGGACGTGAAAG
CAGGGGCAGGAGAAGCGTGGACAGTCGCTTGGTCGCCCACCGCATCTCTT
GTTGCCAGCGGTACGCAGAGGGGCTGTGTGAATGTGTGGGAGGTGGGAGG
GATAGAGGAAGGGAGGGAGGGAGGAGTGGCGGTGCTCCCCTCAACGGTGG
CAATGACGTTAAAGACCCAGTCGGGCAAGACCGGAGGTGGGGGAGGAGGG
AAGGGTGGACGGAAGGAGGCCAGTGCACCGTTTATTTTCAGCGTGGCTTT
CTCGCCGGACGGGAGTAAATTGGCGTGTGGGGGGAGCGATGGCTTGGTGT
ACGTTTTTGACGTGGAGACAGGAGCTTTGATAGCTTCCCTACAGGGACAC
ACCAAGCCCGTTCGCTCCCTAGCCTTCACACCCACCGGCTACGCCCTCTT
GAGCGCCTCGGACGACCAGCGGGTGAATGTTCATGAGCTCGCCTCGTCCT
CCTCCTTGCCTTCCTCCTCGACGGCCCGCCCTCCCTCCCTGGTGGCCACT
TACGAGGGCCATGCGTCGTTTGTGCTGAGTGTAGCTGCCAGCCCTGATGG
ACGACACTTTGCCTCGGGTGGAGCAGACAGGAAGGTAAAGCTGTGGGATC
TGGCAATGCGGGAATGTGTGCATACGGTGGAGAGACACGGGGAGGCAGTA
TGGGCCTTGGCGTTTGAGCCGGATGGAAGGGGAGAGGGAGGGGGGGGGAG
AGGAGGTTGGCGAGTGGGGGGGAGGATGGGACGATGCTGGTGTTTGGAGT
AG
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Synonyms
Publications