NO03G00250.2, NO03G00250.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00250.2
Unique NameNO03G00250.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3054
Alignment locationchr3:75129..78332 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:75129..78332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00250.2 vs.
Match: EWM29571.1 (uncharacterized protein Naga_100006g11 [Nannochloropsis gaditana])

HSP 1 Score: 310.1 bits (793), Expect = 5.300e-81
Identity = 159/191 (83.25%), Postives = 172/191 (90.05%), Query Frame = 0 
Query:   14 RMILAKSFATQSLRHQATATAAKKLASVQLFSTVRETLPHHPSDKAAIAEVAATTEKWLKTVTGQKPTSPAETAALYANDGVLWATVSTELRVNPKEIRDYFDVFARLPNLTVTDYKPFIRMYGDIALNDGYYTVHFDSPDGKKVTTKARYVFVYKRNESSGAWEIIDHHSSAMPVAPAGLKTATTVAPPT 205
            +M+LAKS ATQSLR QA+ TA KK   V L STVRET+P  PS K  +AEVAATTEKWL+TVTGQKPTSPAETAALYA DGVLWATVSTELRVNPKEIRDYFDVFARLPNL V+DYKP+IR+YGDIALNDGYYTV FDSP+GKKV TKARYVFVYKR+E+SGAWEIIDHHSSAMPVAPAGLK ATTVAPP+
Sbjct:  370 KMLLAKSLATQSLRLQASITA-KKAFPVHLLSTVRETIPSRPSHKQVVAEVAATTEKWLETVTGQKPTSPAETAALYAKDGVLWATVSTELRVNPKEIRDYFDVFARLPNLKVSDYKPYIRVYGDIALNDGYYTVTFDSPEGKKV-TKARYVFVYKRDEASGAWEIIDHHSSAMPVAPAGLKKATTVAPPS 558
The following BLAST results are available for this feature:
BLAST of NO03G00250.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29571.15.300e-8183.25uncharacterized protein Naga_100006g11 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00250NO03G00250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00250.2NO03G00250.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00250.2.cds1NO03G00250.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00250.2.cds2NO03G00250.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00250.2 ID=NO03G00250.2|Name=NO03G00250.2|organism=Nannochloropsis oceanica|type=mRNA|length=3054bp
GGGAGCTACAGACGCCTCCTCCACCCCCGGCCTGGTAAACGGGCGCGTTT
TAATGTAGTCGTGAACCGGCTACTCTCGCAGCGCCAAAATTGAGGGCCGG
GACCCACATCCTCGTTGAAAATGTCTTGCAAAACTACCGAAGCAATTTTT
CAGGTATCACCTCCCACCCGACGCGAGCGCGGCCCAAGACACTCATCTTT
AGGCCATCGAAGCGAAGAACAAAGAGCAATCCCTCTGCTTCCGAGACAAA
GGTGGGAATGAGCACTGTGGCCTGTAGCTTCCCTACTATCTCGTCCTCGT
CATATGCTGAGACCCCCAAAATGAGCTAGACATAGTCACTTAAGCTGTCC
TGACAACCCACCATGACACAGCAGACTTACCACCAACCCAACAAGCGAGC
AAGAATGATCCTGGCTAAGTCCTTCGCGACCCAATCCCTGCGCCACCAGG
CCACCGCCACCGCCGCCAAGAAGCTGGCCTCCGTGCAGCTCTTCTCGACG
GTTCGCGAGACCCTCCCCCATCACCCGTCCGATAAGGCCGCGATTGCTGA
GGTGGCGGCGACGACCGAAAAATGGCTCAAGACCGTCACTGGCCAGAAGC
CGACCAGCCCCGCGGAGACGGCCGCCCTCTACGCTAACGACGGCGTTCTC
TGGGCCACCGTATCCACGGAGCTGCGCGTGAACCCCAAGGAGATCCGCGA
CTACTTTGACGTGTTTGCACGCCTGCCTAACCTGACCGTGACGGACTACA
AGCCCTTCATCCGCATGTATGGGGACATCGCCCTGAACGACGGCTACTAC
ACCGTGCACTTCGACTCCCCCGACGGCAAGAAGGTCACGACCAAGGCCCG
CTACGTCTTCGTCTACAAACGCAACGAGTCCTCGGGCGCTTGGGAGATCA
TTGACCACCATTCCTCGGCCATGCCCGTGGCACCCGCGGGACTCAAGACA
GCCACCACCGTCGCACCTCCGACGTCCCATTAGAATAATGGTGAAAATTT
AACAGTATGAGTTTGAAATGATGAAAGGTGGAGGGAAGTAGAGATTTAGA
GAGAAAGCGAGAAAGTGGGTGACGCAATGTGCACCTGCACAGCGCACTCT
CCTCTCCTTCTCTTTCCTTCACTTCCATATGTTCCTCAATTATAAAATAG
TGTGCCATATCCCAACTCGTGCACAAAAGGAGGAGCAACAGCTGTAGGAA
AGGGACATATACAGATATACAGATACACACTCGACACATCAATGTATTAA
TTATCAAGGCGGCTCATGTATAGACGTAGGAAAATGAATGAAAGTACTGG
AAGAGAGAGGAGGAAGATGATAAAGAGAGGAAAGAGGAGAAAAAGGGGAG
AAAGAAAGAAGAAAAGGAAGAAGAAGGAGGAACTTATCGATTCGCCTGCA
AATACAATCATCCGCGAACTGAAGAAGGGAGTTTGGATAAAGACAGGATG
TTCCTGGTAGCTGAAAGGAGTATATGCAGTTCAACGATTTTTTTTTTCCT
TTGGAATTTCCTTCTTACTCGAGTTGGAGGATTTCCCTTTTTGGTTTTGG
TCCTTGCTTTACCCTCAGATAGAGGAGATCAAAAGGCTTTAATTAATTTA
ATAGTTCGGGTAGTTGATGTCGCCTTTCTTCAAATTATTCAAATTACTCG
CTCAAAGCGGAGGTGCTTACCGCATATGGGGAGGCCACGAGGCTACACAA
TCTTCTAGGTTGAGTAGGCTTGGTCACTGCTCTGGAGCTTCTTTCTCTCC
ACACTCGCTCCATTTTTAACATATATTTATAATCGTTCTTTTTCGCGCGT
TCCTTCTCGGCTTCCTTCCGTGCGTAGGCAGTCCAAATCACAAATCTTTT
TTTCTAGGATATTATCAAACAAGTAAGGAAAGCACACGATTACAACTTAT
CTTAGCCTACCCTCCCTCGTCCAGGCTTTCTCTCGCTCTATGAGGATCAT
TATCATTCCACTTCTCAGGGATTCCCCCTTCAACCACCTTTTGTCCTTTT
TGCACACATCCTCCGCCCCTCCCCGTCATCCATTTCTCCTTCACCCCCTT
AACCCTGCATCTTCAGGCCCAACAGCATGGATGCTGCCACTAAACGGTCG
CACTTCATGTCCACATGGCACTGGCGCTTCTTCAAAGGCAAACGAGCGTC
GTCAATCTCTTGTTGACGCTTCTTCTTTTCCTCCTTCTCTTCTTCCTTCT
CCTCCTCTTCCCCGTCCTTCACCTCTTCCTTTTCTTCTTCTTCATCCTCC
TCTTCCTCTTCCCCCTCGTCTTCCTCCTCATCTTCCTCTTGTATGTACTG
CCGCCCGATATTACCGCTACTCGTGCTTGAGCCTTTGTCCTCGTCCGAGC
CTTCGGCAATTACAGGCCCGGGGGCAGGAGGGAACTTGACAAGATTACCA
TCGGTGACGTTGCACATTTTGTTGCTGCCACCGCTATTAATGCTGTTCTT
CATGCTGCTACTGGTGCCTGTAGTGTGGGCGCTGCTGAGGATATTAGCAA
CGGTAGAGAGCCTCCCGCTGCAGCGTCTGCTGCTGCTACTGCTGCTGCAA
TTCTTCTTGTTGCTGTTGTTTCTGCTGCTGCTGTTGCTGCTGCTGCTGCT
GTTGTTATTGTTGTTGTTGCTGCTGCTGCTGCTCCTGACAAAATTATTTG
CAGGGCTGCTCTTCAAACCCGTGCCGAGGTTGGCGCTGCGATGGAGAAAG
GCATCATTGCTAATGCTGCTTATGTTGACAGACGCGACAGCAGCGGCCCC
AGACACGATGGGGCCCATGTGGTGGACATTGCTCATGGCCGTAGAATCGT
GCTGTCGGCTGTGAAGCTCCTGCTGGTGCTGGTGCTTGTGCTGCTGGTGT
TGGTGCTGCTGGTGCTGTTGGTGCTGGTGCTGATGCTGGTGCTGATGCTG
GTGCTGGCGCTGCTGCTGCTCATGTTGCTGTTGCTGTTGCTGGTGGTAGT
GGTTTTGGTTGCGAATGCGGGACAGAGTGAGAGGTTGAAAATGCTGCGGA
GCGCGTCCTCCTCCTTCTACTCCTCCTCCTCCTCCTCCTCCTCTTCCACC
TCCT
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protein sequence of NO03G00250.2

>NO03G00250.2-protein ID=NO03G00250.2-protein|Name=NO03G00250.2|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MTQQTYHQPNKRARMILAKSFATQSLRHQATATAAKKLASVQLFSTVRET
LPHHPSDKAAIAEVAATTEKWLKTVTGQKPTSPAETAALYANDGVLWATV
STELRVNPKEIRDYFDVFARLPNLTVTDYKPFIRMYGDIALNDGYYTVHF
DSPDGKKVTTKARYVFVYKRNESSGAWEIIDHHSSAMPVAPAGLKTATTV
APPTSH*
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mRNA from alignment at chr3:75129..78332+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00250.2 ID=NO03G00250.2|Name=NO03G00250.2|organism=Nannochloropsis oceanica|type=mRNA|length=3204bp|location=Sequence derived from alignment at chr3:75129..78332+ (Nannochloropsis oceanica)
GGGAGCTACAGACGCCTCCTCCACCCCCGGCCTGGTAAACGGGCGCGTTT
TAATGTAGTCGTGAACCGGCTACTCTCGCAGCGCCAAAATTGAGGGCCGG
GACCCACATCCTCGTTGAAAATGTCTTGCAAAACTACCGAAGCAATTTTT
CAGGTATCACCTCCCACCCGACGCGAGCGCGGCCCAAGACACTCATCTTT
AGGCCATCGAAGCGAAGAACAAAGAGCAATCCCTCTGCTTCCGAGACAAA
GGTGGGAATGAGCACTGTGGCCTGTAGCTTCCCTACTATCTCGTCCTCGT
CATATGCTGAGACCCCCAAAATGAGCTAGACATAGTCACTTAAGCTGTCC
TGACAACCCACCATGACACAGCAGACTTACCACCAACCCAACAAGCGAGC
AAGAATGATCCTGGCTAAGTCCTTCGCGACCCAATCCCTGCGCCACCAGG
CCACCGCCACCGCCGCCAAGGTAAGTGCTAGCAGCAGTCCCAGAACCTTG
CAAGAGAGTAGACCAAAATTGTATACACCCGCATCCCCAGCGCCTCCTCT
TCTGCCTTGTGCATTTATGTAATCATGGTCTCCCTCCCTTTCGGACACCC
TATTCAACACCACCCCACAGAAGCTGGCCTCCGTGCAGCTCTTCTCGACG
GTTCGCGAGACCCTCCCCCATCACCCGTCCGATAAGGCCGCGATTGCTGA
GGTGGCGGCGACGACCGAAAAATGGCTCAAGACCGTCACTGGCCAGAAGC
CGACCAGCCCCGCGGAGACGGCCGCCCTCTACGCTAACGACGGCGTTCTC
TGGGCCACCGTATCCACGGAGCTGCGCGTGAACCCCAAGGAGATCCGCGA
CTACTTTGACGTGTTTGCACGCCTGCCTAACCTGACCGTGACGGACTACA
AGCCCTTCATCCGCATGTATGGGGACATCGCCCTGAACGACGGCTACTAC
ACCGTGCACTTCGACTCCCCCGACGGCAAGAAGGTCACGACCAAGGCCCG
CTACGTCTTCGTCTACAAACGCAACGAGTCCTCGGGCGCTTGGGAGATCA
TTGACCACCATTCCTCGGCCATGCCCGTGGCACCCGCGGGACTCAAGACA
GCCACCACCGTCGCACCTCCGACGTCCCATTAGAATAATGGTGAAAATTT
AACAGTATGAGTTTGAAATGATGAAAGGTGGAGGGAAGTAGAGATTTAGA
GAGAAAGCGAGAAAGTGGGTGACGCAATGTGCACCTGCACAGCGCACTCT
CCTCTCCTTCTCTTTCCTTCACTTCCATATGTTCCTCAATTATAAAATAG
TGTGCCATATCCCAACTCGTGCACAAAAGGAGGAGCAACAGCTGTAGGAA
AGGGACATATACAGATATACAGATACACACTCGACACATCAATGTATTAA
TTATCAAGGCGGCTCATGTATAGACGTAGGAAAATGAATGAAAGTACTGG
AAGAGAGAGGAGGAAGATGATAAAGAGAGGAAAGAGGAGAAAAAGGGGAG
AAAGAAAGAAGAAAAGGAAGAAGAAGGAGGAACTTATCGATTCGCCTGCA
AATACAATCATCCGCGAACTGAAGAAGGGAGTTTGGATAAAGACAGGATG
TTCCTGGTAGCTGAAAGGAGTATATGCAGTTCAACGATTTTTTTTTTCCT
TTGGAATTTCCTTCTTACTCGAGTTGGAGGATTTCCCTTTTTGGTTTTGG
TCCTTGCTTTACCCTCAGATAGAGGAGATCAAAAGGCTTTAATTAATTTA
ATAGTTCGGGTAGTTGATGTCGCCTTTCTTCAAATTATTCAAATTACTCG
CTCAAAGCGGAGGTGCTTACCGCATATGGGGAGGCCACGAGGCTACACAA
TCTTCTAGGTTGAGTAGGCTTGGTCACTGCTCTGGAGCTTCTTTCTCTCC
ACACTCGCTCCATTTTTAACATATATTTATAATCGTTCTTTTTCGCGCGT
TCCTTCTCGGCTTCCTTCCGTGCGTAGGCAGTCCAAATCACAAATCTTTT
TTTCTAGGATATTATCAAACAAGTAAGGAAAGCACACGATTACAACTTAT
CTTAGCCTACCCTCCCTCGTCCAGGCTTTCTCTCGCTCTATGAGGATCAT
TATCATTCCACTTCTCAGGGATTCCCCCTTCAACCACCTTTTGTCCTTTT
TGCACACATCCTCCGCCCCTCCCCGTCATCCATTTCTCCTTCACCCCCTT
AACCCTGCATCTTCAGGCCCAACAGCATGGATGCTGCCACTAAACGGTCG
CACTTCATGTCCACATGGCACTGGCGCTTCTTCAAAGGCAAACGAGCGTC
GTCAATCTCTTGTTGACGCTTCTTCTTTTCCTCCTTCTCTTCTTCCTTCT
CCTCCTCTTCCCCGTCCTTCACCTCTTCCTTTTCTTCTTCTTCATCCTCC
TCTTCCTCTTCCCCCTCGTCTTCCTCCTCATCTTCCTCTTGTATGTACTG
CCGCCCGATATTACCGCTACTCGTGCTTGAGCCTTTGTCCTCGTCCGAGC
CTTCGGCAATTACAGGCCCGGGGGCAGGAGGGAACTTGACAAGATTACCA
TCGGTGACGTTGCACATTTTGTTGCTGCCACCGCTATTAATGCTGTTCTT
CATGCTGCTACTGGTGCCTGTAGTGTGGGCGCTGCTGAGGATATTAGCAA
CGGTAGAGAGCCTCCCGCTGCAGCGTCTGCTGCTGCTACTGCTGCTGCAA
TTCTTCTTGTTGCTGTTGTTTCTGCTGCTGCTGTTGCTGCTGCTGCTGCT
GTTGTTATTGTTGTTGTTGCTGCTGCTGCTGCTCCTGACAAAATTATTTG
CAGGGCTGCTCTTCAAACCCGTGCCGAGGTTGGCGCTGCGATGGAGAAAG
GCATCATTGCTAATGCTGCTTATGTTGACAGACGCGACAGCAGCGGCCCC
AGACACGATGGGGCCCATGTGGTGGACATTGCTCATGGCCGTAGAATCGT
GCTGTCGGCTGTGAAGCTCCTGCTGGTGCTGGTGCTTGTGCTGCTGGTGT
TGGTGCTGCTGGTGCTGTTGGTGCTGGTGCTGATGCTGGTGCTGATGCTG
GTGCTGGCGCTGCTGCTGCTCATGTTGCTGTTGCTGTTGCTGGTGGTAGT
GGTTTTGGTTGCGAATGCGGGACAGAGTGAGAGGTTGAAAATGCTGCGGA
GCGCGTCCTCCTCCTTCTACTCCTCCTCCTCCTCCTCCTCCTCTTCCACC
TCCT
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Coding sequence (CDS) from alignment at chr3:75129..78332+

>NO03G00250.2 ID=NO03G00250.2|Name=NO03G00250.2|organism=Nannochloropsis oceanica|type=CDS|length=621bp|location=Sequence derived from alignment at chr3:75129..78332+ (Nannochloropsis oceanica)
ATGACACAGCAGACTTACCACCAACCCAACAAGCGAGCAAGAATGATCCT
GGCTAAGTCCTTCGCGACCCAATCCCTGCGCCACCAGGCCACCGCCACCG
CCGCCAAGAAGCTGGCCTCCGTGCAGCTCTTCTCGACGGTTCGCGAGACC
CTCCCCCATCACCCGTCCGATAAGGCCGCGATTGCTGAGGTGGCGGCGAC
GACCGAAAAATGGCTCAAGACCGTCACTGGCCAGAAGCCGACCAGCCCCG
CGGAGACGGCCGCCCTCTACGCTAACGACGGCGTTCTCTGGGCCACCGTA
TCCACGGAGCTGCGCGTGAACCCCAAGGAGATCCGCGACTACTTTGACGT
GTTTGCACGCCTGCCTAACCTGACCGTGACGGACTACAAGCCCTTCATCC
GCATGTATGGGGACATCGCCCTGAACGACGGCTACTACACCGTGCACTTC
GACTCCCCCGACGGCAAGAAGGTCACGACCAAGGCCCGCTACGTCTTCGT
CTACAAACGCAACGAGTCCTCGGGCGCTTGGGAGATCATTGACCACCATT
CCTCGGCCATGCCCGTGGCACCCGCGGGACTCAAGACAGCCACCACCGTC
GCACCTCCGACGTCCCATTAG
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Synonyms
Publications