NO03G00250.1, NO03G00250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00250.1
Unique NameNO03G00250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2934
Alignment locationchr3:75129..78332 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:75129..78332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00250.1 vs.
Match: XP_005854563.1 (putative protein conserved in bacteria with a cystatin-like fold containing protein [Nannochloropsis gaditana CCMP526]; XP_005854721.1 putative protein conserved in bacteria with a cystatin-like fold containing protein [Nannochloropsis gaditana CCMP526]; EKU21634.1 putative protein conserved in bacteria with a cystatin-like fold containing protein [Nannochloropsis gaditana CCMP526]; EKU21794.1 putative protein conserved in bacteria with a cystatin-like fold containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 308.9 bits (790), Expect = 1.100e-80
Identity = 159/190 (83.68%), Postives = 171/190 (90.00%), Query Frame = 0 
Query:    1 MILAKSFATQSLRHQATATAAKKLASVQLFSTVRETLPHHPSDKAAIAEVAATTEKWLKTVTGQKPTSPAETAALYANDGVLWATVSTELRVNPKEIRDYFDVFARLPNLTVTDYKPFIRMYGDIALNDGYYTVHFDSPDGKKVTTKARYVFVYKRNESSGAWEIIDHHSSAMPVAPAGLKTATTVAPPT 191
            M+LAKS ATQSLR QA+ TA KK   V L STVRET+P  PS K  +AEVAATTEKWL+TVTGQKPTSPAETAALYA DGVLWATVSTELRVNPKEIRDYFDVFARLPNL V+DYKP+IR+YGDIALNDGYYTV FDSP+GKKV TKARYVFVYKR+E+SGAWEIIDHHSSAMPVAPAGLK ATTVAPP+
Sbjct:    1 MLLAKSLATQSLRLQASITA-KKAFPVHLLSTVRETIPSRPSHKQVVAEVAATTEKWLETVTGQKPTSPAETAALYAKDGVLWATVSTELRVNPKEIRDYFDVFARLPNLKVSDYKPYIRVYGDIALNDGYYTVTFDSPEGKKV-TKARYVFVYKRDEASGAWEIIDHHSSAMPVAPAGLKKATTVAPPS 188
The following BLAST results are available for this feature:
BLAST of NO03G00250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854563.11.100e-8083.68putative protein conserved in bacteria with a cyst... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00250NO03G00250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00250.1NO03G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00250.1.cds1NO03G00250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00250.1.cds2NO03G00250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00250.1 ID=NO03G00250.1|Name=NO03G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2934bp
GGGAGCTACAGACGCCTCCTCCACCCCCGGCCTGGTAAACGGGCGCGTTT
TAATGTAGTCGTGAACCGGCTACTCTCGCAGCGCCAAAATTGAGGGCCGG
GACCCACATCCTCGTTGAAAATGTCTTGCAAAACTACCGAAGCAATTTTT
CAGGTATCACCTCCCACCCGACGCGAGCGCGGCCCAAGACACTCATCTTT
AGGCCATCGAAGCGAAGAACAAAGAGCAATCCCTCTGCTTCCGAGACAAA
GCAGACTTACCACCAACCCAACAAGCGAGCAAGAATGATCCTGGCTAAGT
CCTTCGCGACCCAATCCCTGCGCCACCAGGCCACCGCCACCGCCGCCAAG
AAGCTGGCCTCCGTGCAGCTCTTCTCGACGGTTCGCGAGACCCTCCCCCA
TCACCCGTCCGATAAGGCCGCGATTGCTGAGGTGGCGGCGACGACCGAAA
AATGGCTCAAGACCGTCACTGGCCAGAAGCCGACCAGCCCCGCGGAGACG
GCCGCCCTCTACGCTAACGACGGCGTTCTCTGGGCCACCGTATCCACGGA
GCTGCGCGTGAACCCCAAGGAGATCCGCGACTACTTTGACGTGTTTGCAC
GCCTGCCTAACCTGACCGTGACGGACTACAAGCCCTTCATCCGCATGTAT
GGGGACATCGCCCTGAACGACGGCTACTACACCGTGCACTTCGACTCCCC
CGACGGCAAGAAGGTCACGACCAAGGCCCGCTACGTCTTCGTCTACAAAC
GCAACGAGTCCTCGGGCGCTTGGGAGATCATTGACCACCATTCCTCGGCC
ATGCCCGTGGCACCCGCGGGACTCAAGACAGCCACCACCGTCGCACCTCC
GACGTCCCATTAGAATAATGGTGAAAATTTAACAGTATGAGTTTGAAATG
ATGAAAGGTGGAGGGAAGTAGAGATTTAGAGAGAAAGCGAGAAAGTGGGT
GACGCAATGTGCACCTGCACAGCGCACTCTCCTCTCCTTCTCTTTCCTTC
ACTTCCATATGTTCCTCAATTATAAAATAGTGTGCCATATCCCAACTCGT
GCACAAAAGGAGGAGCAACAGCTGTAGGAAAGGGACATATACAGATATAC
AGATACACACTCGACACATCAATGTATTAATTATCAAGGCGGCTCATGTA
TAGACGTAGGAAAATGAATGAAAGTACTGGAAGAGAGAGGAGGAAGATGA
TAAAGAGAGGAAAGAGGAGAAAAAGGGGAGAAAGAAAGAAGAAAAGGAAG
AAGAAGGAGGAACTTATCGATTCGCCTGCAAATACAATCATCCGCGAACT
GAAGAAGGGAGTTTGGATAAAGACAGGATGTTCCTGGTAGCTGAAAGGAG
TATATGCAGTTCAACGATTTTTTTTTTCCTTTGGAATTTCCTTCTTACTC
GAGTTGGAGGATTTCCCTTTTTGGTTTTGGTCCTTGCTTTACCCTCAGAT
AGAGGAGATCAAAAGGCTTTAATTAATTTAATAGTTCGGGTAGTTGATGT
CGCCTTTCTTCAAATTATTCAAATTACTCGCTCAAAGCGGAGGTGCTTAC
CGCATATGGGGAGGCCACGAGGCTACACAATCTTCTAGGTTGAGTAGGCT
TGGTCACTGCTCTGGAGCTTCTTTCTCTCCACACTCGCTCCATTTTTAAC
ATATATTTATAATCGTTCTTTTTCGCGCGTTCCTTCTCGGCTTCCTTCCG
TGCGTAGGCAGTCCAAATCACAAATCTTTTTTTCTAGGATATTATCAAAC
AAGTAAGGAAAGCACACGATTACAACTTATCTTAGCCTACCCTCCCTCGT
CCAGGCTTTCTCTCGCTCTATGAGGATCATTATCATTCCACTTCTCAGGG
ATTCCCCCTTCAACCACCTTTTGTCCTTTTTGCACACATCCTCCGCCCCT
CCCCGTCATCCATTTCTCCTTCACCCCCTTAACCCTGCATCTTCAGGCCC
AACAGCATGGATGCTGCCACTAAACGGTCGCACTTCATGTCCACATGGCA
CTGGCGCTTCTTCAAAGGCAAACGAGCGTCGTCAATCTCTTGTTGACGCT
TCTTCTTTTCCTCCTTCTCTTCTTCCTTCTCCTCCTCTTCCCCGTCCTTC
ACCTCTTCCTTTTCTTCTTCTTCATCCTCCTCTTCCTCTTCCCCCTCGTC
TTCCTCCTCATCTTCCTCTTGTATGTACTGCCGCCCGATATTACCGCTAC
TCGTGCTTGAGCCTTTGTCCTCGTCCGAGCCTTCGGCAATTACAGGCCCG
GGGGCAGGAGGGAACTTGACAAGATTACCATCGGTGACGTTGCACATTTT
GTTGCTGCCACCGCTATTAATGCTGTTCTTCATGCTGCTACTGGTGCCTG
TAGTGTGGGCGCTGCTGAGGATATTAGCAACGGTAGAGAGCCTCCCGCTG
CAGCGTCTGCTGCTGCTACTGCTGCTGCAATTCTTCTTGTTGCTGTTGTT
TCTGCTGCTGCTGTTGCTGCTGCTGCTGCTGTTGTTATTGTTGTTGTTGC
TGCTGCTGCTGCTCCTGACAAAATTATTTGCAGGGCTGCTCTTCAAACCC
GTGCCGAGGTTGGCGCTGCGATGGAGAAAGGCATCATTGCTAATGCTGCT
TATGTTGACAGACGCGACAGCAGCGGCCCCAGACACGATGGGGCCCATGT
GGTGGACATTGCTCATGGCCGTAGAATCGTGCTGTCGGCTGTGAAGCTCC
TGCTGGTGCTGGTGCTTGTGCTGCTGGTGTTGGTGCTGCTGGTGCTGTTG
GTGCTGGTGCTGATGCTGGTGCTGATGCTGGTGCTGGCGCTGCTGCTGCT
CATGTTGCTGTTGCTGTTGCTGGTGGTAGTGGTTTTGGTTGCGAATGCGG
GACAGAGTGAGAGGTTGAAAATGCTGCGGAGCGCGTCCTCCTCCTTCTAC
TCCTCCTCCTCCTCCTCCTCCTCTTCCACCTCCT
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protein sequence of NO03G00250.1

>NO03G00250.1-protein ID=NO03G00250.1-protein|Name=NO03G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MILAKSFATQSLRHQATATAAKKLASVQLFSTVRETLPHHPSDKAAIAEV
AATTEKWLKTVTGQKPTSPAETAALYANDGVLWATVSTELRVNPKEIRDY
FDVFARLPNLTVTDYKPFIRMYGDIALNDGYYTVHFDSPDGKKVTTKARY
VFVYKRNESSGAWEIIDHHSSAMPVAPAGLKTATTVAPPTSH*
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mRNA from alignment at chr3:75129..78332+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00250.1 ID=NO03G00250.1|Name=NO03G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=3204bp|location=Sequence derived from alignment at chr3:75129..78332+ (Nannochloropsis oceanica)
GGGAGCTACAGACGCCTCCTCCACCCCCGGCCTGGTAAACGGGCGCGTTT
TAATGTAGTCGTGAACCGGCTACTCTCGCAGCGCCAAAATTGAGGGCCGG
GACCCACATCCTCGTTGAAAATGTCTTGCAAAACTACCGAAGCAATTTTT
CAGGTATCACCTCCCACCCGACGCGAGCGCGGCCCAAGACACTCATCTTT
AGGCCATCGAAGCGAAGAACAAAGAGCAATCCCTCTGCTTCCGAGACAAA
GGTGGGAATGAGCACTGTGGCCTGTAGCTTCCCTACTATCTCGTCCTCGT
CATATGCTGAGACCCCCAAAATGAGCTAGACATAGTCACTTAAGCTGTCC
TGACAACCCACCATGACACAGCAGACTTACCACCAACCCAACAAGCGAGC
AAGAATGATCCTGGCTAAGTCCTTCGCGACCCAATCCCTGCGCCACCAGG
CCACCGCCACCGCCGCCAAGGTAAGTGCTAGCAGCAGTCCCAGAACCTTG
CAAGAGAGTAGACCAAAATTGTATACACCCGCATCCCCAGCGCCTCCTCT
TCTGCCTTGTGCATTTATGTAATCATGGTCTCCCTCCCTTTCGGACACCC
TATTCAACACCACCCCACAGAAGCTGGCCTCCGTGCAGCTCTTCTCGACG
GTTCGCGAGACCCTCCCCCATCACCCGTCCGATAAGGCCGCGATTGCTGA
GGTGGCGGCGACGACCGAAAAATGGCTCAAGACCGTCACTGGCCAGAAGC
CGACCAGCCCCGCGGAGACGGCCGCCCTCTACGCTAACGACGGCGTTCTC
TGGGCCACCGTATCCACGGAGCTGCGCGTGAACCCCAAGGAGATCCGCGA
CTACTTTGACGTGTTTGCACGCCTGCCTAACCTGACCGTGACGGACTACA
AGCCCTTCATCCGCATGTATGGGGACATCGCCCTGAACGACGGCTACTAC
ACCGTGCACTTCGACTCCCCCGACGGCAAGAAGGTCACGACCAAGGCCCG
CTACGTCTTCGTCTACAAACGCAACGAGTCCTCGGGCGCTTGGGAGATCA
TTGACCACCATTCCTCGGCCATGCCCGTGGCACCCGCGGGACTCAAGACA
GCCACCACCGTCGCACCTCCGACGTCCCATTAGAATAATGGTGAAAATTT
AACAGTATGAGTTTGAAATGATGAAAGGTGGAGGGAAGTAGAGATTTAGA
GAGAAAGCGAGAAAGTGGGTGACGCAATGTGCACCTGCACAGCGCACTCT
CCTCTCCTTCTCTTTCCTTCACTTCCATATGTTCCTCAATTATAAAATAG
TGTGCCATATCCCAACTCGTGCACAAAAGGAGGAGCAACAGCTGTAGGAA
AGGGACATATACAGATATACAGATACACACTCGACACATCAATGTATTAA
TTATCAAGGCGGCTCATGTATAGACGTAGGAAAATGAATGAAAGTACTGG
AAGAGAGAGGAGGAAGATGATAAAGAGAGGAAAGAGGAGAAAAAGGGGAG
AAAGAAAGAAGAAAAGGAAGAAGAAGGAGGAACTTATCGATTCGCCTGCA
AATACAATCATCCGCGAACTGAAGAAGGGAGTTTGGATAAAGACAGGATG
TTCCTGGTAGCTGAAAGGAGTATATGCAGTTCAACGATTTTTTTTTTCCT
TTGGAATTTCCTTCTTACTCGAGTTGGAGGATTTCCCTTTTTGGTTTTGG
TCCTTGCTTTACCCTCAGATAGAGGAGATCAAAAGGCTTTAATTAATTTA
ATAGTTCGGGTAGTTGATGTCGCCTTTCTTCAAATTATTCAAATTACTCG
CTCAAAGCGGAGGTGCTTACCGCATATGGGGAGGCCACGAGGCTACACAA
TCTTCTAGGTTGAGTAGGCTTGGTCACTGCTCTGGAGCTTCTTTCTCTCC
ACACTCGCTCCATTTTTAACATATATTTATAATCGTTCTTTTTCGCGCGT
TCCTTCTCGGCTTCCTTCCGTGCGTAGGCAGTCCAAATCACAAATCTTTT
TTTCTAGGATATTATCAAACAAGTAAGGAAAGCACACGATTACAACTTAT
CTTAGCCTACCCTCCCTCGTCCAGGCTTTCTCTCGCTCTATGAGGATCAT
TATCATTCCACTTCTCAGGGATTCCCCCTTCAACCACCTTTTGTCCTTTT
TGCACACATCCTCCGCCCCTCCCCGTCATCCATTTCTCCTTCACCCCCTT
AACCCTGCATCTTCAGGCCCAACAGCATGGATGCTGCCACTAAACGGTCG
CACTTCATGTCCACATGGCACTGGCGCTTCTTCAAAGGCAAACGAGCGTC
GTCAATCTCTTGTTGACGCTTCTTCTTTTCCTCCTTCTCTTCTTCCTTCT
CCTCCTCTTCCCCGTCCTTCACCTCTTCCTTTTCTTCTTCTTCATCCTCC
TCTTCCTCTTCCCCCTCGTCTTCCTCCTCATCTTCCTCTTGTATGTACTG
CCGCCCGATATTACCGCTACTCGTGCTTGAGCCTTTGTCCTCGTCCGAGC
CTTCGGCAATTACAGGCCCGGGGGCAGGAGGGAACTTGACAAGATTACCA
TCGGTGACGTTGCACATTTTGTTGCTGCCACCGCTATTAATGCTGTTCTT
CATGCTGCTACTGGTGCCTGTAGTGTGGGCGCTGCTGAGGATATTAGCAA
CGGTAGAGAGCCTCCCGCTGCAGCGTCTGCTGCTGCTACTGCTGCTGCAA
TTCTTCTTGTTGCTGTTGTTTCTGCTGCTGCTGTTGCTGCTGCTGCTGCT
GTTGTTATTGTTGTTGTTGCTGCTGCTGCTGCTCCTGACAAAATTATTTG
CAGGGCTGCTCTTCAAACCCGTGCCGAGGTTGGCGCTGCGATGGAGAAAG
GCATCATTGCTAATGCTGCTTATGTTGACAGACGCGACAGCAGCGGCCCC
AGACACGATGGGGCCCATGTGGTGGACATTGCTCATGGCCGTAGAATCGT
GCTGTCGGCTGTGAAGCTCCTGCTGGTGCTGGTGCTTGTGCTGCTGGTGT
TGGTGCTGCTGGTGCTGTTGGTGCTGGTGCTGATGCTGGTGCTGATGCTG
GTGCTGGCGCTGCTGCTGCTCATGTTGCTGTTGCTGTTGCTGGTGGTAGT
GGTTTTGGTTGCGAATGCGGGACAGAGTGAGAGGTTGAAAATGCTGCGGA
GCGCGTCCTCCTCCTTCTACTCCTCCTCCTCCTCCTCCTCCTCTTCCACC
TCCT
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Coding sequence (CDS) from alignment at chr3:75129..78332+

>NO03G00250.1 ID=NO03G00250.1|Name=NO03G00250.1|organism=Nannochloropsis oceanica|type=CDS|length=579bp|location=Sequence derived from alignment at chr3:75129..78332+ (Nannochloropsis oceanica)
ATGATCCTGGCTAAGTCCTTCGCGACCCAATCCCTGCGCCACCAGGCCAC
CGCCACCGCCGCCAAGAAGCTGGCCTCCGTGCAGCTCTTCTCGACGGTTC
GCGAGACCCTCCCCCATCACCCGTCCGATAAGGCCGCGATTGCTGAGGTG
GCGGCGACGACCGAAAAATGGCTCAAGACCGTCACTGGCCAGAAGCCGAC
CAGCCCCGCGGAGACGGCCGCCCTCTACGCTAACGACGGCGTTCTCTGGG
CCACCGTATCCACGGAGCTGCGCGTGAACCCCAAGGAGATCCGCGACTAC
TTTGACGTGTTTGCACGCCTGCCTAACCTGACCGTGACGGACTACAAGCC
CTTCATCCGCATGTATGGGGACATCGCCCTGAACGACGGCTACTACACCG
TGCACTTCGACTCCCCCGACGGCAAGAAGGTCACGACCAAGGCCCGCTAC
GTCTTCGTCTACAAACGCAACGAGTCCTCGGGCGCTTGGGAGATCATTGA
CCACCATTCCTCGGCCATGCCCGTGGCACCCGCGGGACTCAAGACAGCCA
CCACCGTCGCACCTCCGACGTCCCATTAG
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Synonyms
Publications