NO03G00240.1, NO03G00240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00240.1
Unique NameNO03G00240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1234
Alignment locationchr3:73556..74939 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:73556..74939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G00240.1 vs.
Match: XP_005854563.1 (putative protein conserved in bacteria with a cystatin-like fold containing protein [Nannochloropsis gaditana CCMP526]; XP_005854721.1 putative protein conserved in bacteria with a cystatin-like fold containing protein [Nannochloropsis gaditana CCMP526]; EKU21634.1 putative protein conserved in bacteria with a cystatin-like fold containing protein [Nannochloropsis gaditana CCMP526]; EKU21794.1 putative protein conserved in bacteria with a cystatin-like fold containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 310.1 bits (793), Expect = 4.900e-81
Identity = 160/190 (84.21%), Postives = 171/190 (90.00%), Query Frame = 0 
Query:    1 MILAKSFATQSLRHQATATAAKKLASVQLFSTVRETLPHHPSDKAAIAEVAATTEKWLKTVTGQKPTSPAETAALYANDGVLWATVSTELRVNPKEIRDYFDVFARLPNLTVTDYKPFIRMYGDIALNDGYYTVHFDSPDGKKVTTKARYVFVYKRNESSGAWEIIDHHSSAMPVAPAGLKTATTVAPPS 191
            M+LAKS ATQSLR QA+ TA KK   V L STVRET+P  PS K  +AEVAATTEKWL+TVTGQKPTSPAETAALYA DGVLWATVSTELRVNPKEIRDYFDVFARLPNL V+DYKP+IR+YGDIALNDGYYTV FDSP+GKKV TKARYVFVYKR+E+SGAWEIIDHHSSAMPVAPAGLK ATTVAPPS
Sbjct:    1 MLLAKSLATQSLRLQASITA-KKAFPVHLLSTVRETIPSRPSHKQVVAEVAATTEKWLETVTGQKPTSPAETAALYAKDGVLWATVSTELRVNPKEIRDYFDVFARLPNLKVSDYKPYIRVYGDIALNDGYYTVTFDSPEGKKV-TKARYVFVYKRDEASGAWEIIDHHSSAMPVAPAGLKKATTVAPPS 188
The following BLAST results are available for this feature:
BLAST of NO03G00240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854563.14.900e-8184.21putative protein conserved in bacteria with a cyst... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00240NO03G00240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00240.1NO03G00240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00240.1.cds1NO03G00240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00240.1.cds2NO03G00240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00240.1 ID=NO03G00240.1|Name=NO03G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1234bp
CGTCCTTCTTGGTGTTCTTTGCTCGTTCACTTTTCCACTTTCTTGCCTTA
TTTTTCTTGTTGCTTGATGTGAAAATATCTCTTTTTGGGCCCTTGTATTA
GTCCTCAGTACAGATGGCGTCTTGATTTCTTCTGAGGGACAGTAAGGCAC
GCCTTTCTTCTCTTCCTTTCCCAGCAGACACAACTCATACGCATTTCGAG
ATCTCCCTCAGCGTCCGCACACCGGGCAGCTCCTTTCCGGTAGCGCGTGG
TCGCGTGTTACCTTGTCCGTTCAAGCGCATGCCCAGCACGATTTCATAGC
ACCACTCCCTATGAGCAGCACCGCATGCCCCACATGTCTGATCACCTCTC
TGTTCATCCCTCCCTTCCCTCCCACACTTCCATTAAACGCCGCAAAATTA
CCACCAACCCAACAAGCGAGCAAGAATGATCCTGGCTAAGTCCTTCGCGA
CCCAATCCCTGCGCCACCAGGCCACCGCCACCGCCGCCAAGAAGCTGGCC
TCCGTGCAGCTCTTCTCGACGGTTCGCGAGACCCTCCCCCATCACCCGTC
CGATAAGGCCGCGATTGCTGAGGTGGCGGCGACGACCGAAAAATGGCTCA
AGACCGTCACTGGCCAGAAGCCGACCAGCCCCGCGGAGACGGCCGCCCTC
TACGCTAACGACGGCGTTCTCTGGGCCACCGTATCCACGGAGCTGCGCGT
GAACCCCAAGGAGATCCGCGACTACTTTGACGTGTTTGCACGCCTGCCTA
ACCTGACCGTGACGGACTACAAGCCCTTCATCCGCATGTATGGGGACATC
GCCCTGAACGACGGCTACTACACCGTGCACTTCGACTCCCCCGACGGCAA
GAAGGTCACGACCAAGGCCCGCTACGTCTTCGTCTACAAACGCAACGAGT
CCTCGGGCGCTTGGGAGATCATTGACCACCATTCCTCGGCCATGCCCGTG
GCACCCGCGGGACTCAAGACAGCCACCACCGTCGCACCGCCTAGCTAGAT
GGCAGACTGGAAACTCGTTTTGGTCGAGTGATGTGGCATCTGTAGGTGTG
AGCTCTTTCGTCTGTGGAGGAGGCAACGGTGTGCAGTGACCTCGATAGAG
GGTAGTAAGGTGAAAGAAGTGTACATTTACTCCGATTCCAATTGCAGCGA
ACTCAAAGAATTTTTAGAACGACAGAGGTAGGACTATAGAACAAAAACAA
GAAAAGTACAAAAGAAGAAAAACAGCTTTAGGGA
back to top

protein sequence of NO03G00240.1

>NO03G00240.1-protein ID=NO03G00240.1-protein|Name=NO03G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MILAKSFATQSLRHQATATAAKKLASVQLFSTVRETLPHHPSDKAAIAEV
AATTEKWLKTVTGQKPTSPAETAALYANDGVLWATVSTELRVNPKEIRDY
FDVFARLPNLTVTDYKPFIRMYGDIALNDGYYTVHFDSPDGKKVTTKARY
VFVYKRNESSGAWEIIDHHSSAMPVAPAGLKTATTVAPPS*
back to top

mRNA from alignment at chr3:73556..74939-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00240.1 ID=NO03G00240.1|Name=NO03G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1384bp|location=Sequence derived from alignment at chr3:73556..74939- (Nannochloropsis oceanica)
CGTCCTTCTTGGTGTTCTTTGCTCGTTCACTTTTCCACTTTCTTGCCTTA
TTTTTCTTGTTGCTTGATGTGAAAATATCTCTTTTTGGGCCCTTGTATTA
GTCCTCAGTACAGATGGCGTCTTGATTTCTTCTGAGGGACAGTAAGGCAC
GCCTTTCTTCTCTTCCTTTCCCAGCAGACACAACTCATACGCATTTCGAG
ATCTCCCTCAGCGTCCGCACACCGGGCAGCTCCTTTCCGGTAGCGCGTGG
TCGCGTGTTACCTTGTCCGTTCAAGCGCATGCCCAGCACGATTTCATAGC
ACCACTCCCTATGAGCAGCACCGCATGCCCCACATGTCTGATCACCTCTC
TGTTCATCCCTCCCTTCCCTCCCACACTTCCATTAAACGCCGCAAAATTA
CCACCAACCCAACAAGCGAGCAAGAATGATCCTGGCTAAGTCCTTCGCGA
CCCAATCCCTGCGCCACCAGGCCACCGCCACCGCCGCCAAGGTAAGTGCT
AGTAGCAGTCCCAGAACCTTGCAAGAGAGTAGACCAAAATTGTATACACC
CGCATCCCCAGCGCCTCCTCTTCTGCCTTGTGCATTTATGTAATCATGGT
CTCCCTCCCTTTCGGACACCCTATTCAACACCACCCCACAGAAGCTGGCC
TCCGTGCAGCTCTTCTCGACGGTTCGCGAGACCCTCCCCCATCACCCGTC
CGATAAGGCCGCGATTGCTGAGGTGGCGGCGACGACCGAAAAATGGCTCA
AGACCGTCACTGGCCAGAAGCCGACCAGCCCCGCGGAGACGGCCGCCCTC
TACGCTAACGACGGCGTTCTCTGGGCCACCGTATCCACGGAGCTGCGCGT
GAACCCCAAGGAGATCCGCGACTACTTTGACGTGTTTGCACGCCTGCCTA
ACCTGACCGTGACGGACTACAAGCCCTTCATCCGCATGTATGGGGACATC
GCCCTGAACGACGGCTACTACACCGTGCACTTCGACTCCCCCGACGGCAA
GAAGGTCACGACCAAGGCCCGCTACGTCTTCGTCTACAAACGCAACGAGT
CCTCGGGCGCTTGGGAGATCATTGACCACCATTCCTCGGCCATGCCCGTG
GCACCCGCGGGACTCAAGACAGCCACCACCGTCGCACCGCCTAGCTAGAT
GGCAGACTGGAAACTCGTTTTGGTCGAGTGATGTGGCATCTGTAGGTGTG
AGCTCTTTCGTCTGTGGAGGAGGCAACGGTGTGCAGTGACCTCGATAGAG
GGTAGTAAGGTGAAAGAAGTGTACATTTACTCCGATTCCAATTGCAGCGA
ACTCAAAGAATTTTTAGAACGACAGAGGTAGGACTATAGAACAAAAACAA
GAAAAGTACAAAAGAAGAAAAACAGCTTTAGGGA
back to top

Coding sequence (CDS) from alignment at chr3:73556..74939-

>NO03G00240.1 ID=NO03G00240.1|Name=NO03G00240.1|organism=Nannochloropsis oceanica|type=CDS|length=573bp|location=Sequence derived from alignment at chr3:73556..74939- (Nannochloropsis oceanica)
ATGATCCTGGCTAAGTCCTTCGCGACCCAATCCCTGCGCCACCAGGCCAC
CGCCACCGCCGCCAAGAAGCTGGCCTCCGTGCAGCTCTTCTCGACGGTTC
GCGAGACCCTCCCCCATCACCCGTCCGATAAGGCCGCGATTGCTGAGGTG
GCGGCGACGACCGAAAAATGGCTCAAGACCGTCACTGGCCAGAAGCCGAC
CAGCCCCGCGGAGACGGCCGCCCTCTACGCTAACGACGGCGTTCTCTGGG
CCACCGTATCCACGGAGCTGCGCGTGAACCCCAAGGAGATCCGCGACTAC
TTTGACGTGTTTGCACGCCTGCCTAACCTGACCGTGACGGACTACAAGCC
CTTCATCCGCATGTATGGGGACATCGCCCTGAACGACGGCTACTACACCG
TGCACTTCGACTCCCCCGACGGCAAGAAGGTCACGACCAAGGCCCGCTAC
GTCTTCGTCTACAAACGCAACGAGTCCTCGGGCGCTTGGGAGATCATTGA
CCACCATTCCTCGGCCATGCCCGTGGCACCCGCGGGACTCAAGACAGCCA
CCACCGTCGCACCGCCTAGCTAG
back to top
Synonyms
Publications