NO03G00100.1, NO03G00100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00100.1
Unique NameNO03G00100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1500
Alignment locationchr3:28560..30785 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:28560..30785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00100.1 vs.
Match: EWM29993.1 (diphthamide biosynthesis protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 682.6 bits (1760), Expect = 9.400e-193
Identity = 342/428 (79.91%), Postives = 374/428 (87.38%), Query Frame = 0 
Query:   72 MRTLPLPVPSVPSTVTATTSTPTTSSSTDIVPSTSRPPPPAKRQVKRFVGKANRIPDDILEDPSLIQAIAQLPSNYNFEIHKTIWRLREAAATCVALQFPEGLLMYACTIADMVERFVPSVKEVVVMGDVTYGACCIDDLGATAAGADFLVHYGHSCLVPVTCTSLKALYVFVEIRVDATHLIASLSRNLEGERRVCLMGTIQFVSAVHEAAAGLKEHFASVHVPQARPMSAGEVLGCTAPTLDSTAFDTLVFVADGRFHLEAAMIANPSLEAYRYNPYDKTLTREVYDTPKMLRLRKAAVEAGKGSRRWGVIMGTLGRQGNPALVKHAMDLLEGAGKEAFVLLLSEITPQKLALLDEEVDAWVQIACPRLSIDWGLFFTTPVLTAYELEVALGGEAWSETSYPMDYYAKDSGAWGNLHPINAKRVML 500
            M   PLP      T   +TS PT   S ++VPS+S  P P +R +KRFV K  RIPDDILEDP+L QAIAQLPSNYNFE+HKTIWRLREA ATCVALQFPEGLLMYACT+AD++ER+VPSV+EVVVMGDVTYGACCIDDLGA AAGADFLVHYGHSCLVPVTCT+LKALYVFVEI VDA HLI SL RNLE  RRVCLMGTIQF+SAVHE+A  L +HFASV VPQARP+SAGEVLGCT+PTLD+  FDTL+FVADGRFHLEAAMIANPSLEAYRY+PYDKTLTRE+YDTPKMLRLRK AV AGK ++RWGVI+GTLGRQGNPALVKHAMDLLE +G+EAF+LLLSEITPQKL LL EEVDAWVQ+ACPRLSIDWG FF  PVLTAYELEVALGG+AWSE SYPMDYYAKD GAWGN +P NAKR ML
Sbjct:    1 MDEAPLPT----RTPATSTSQPT---SGELVPSSSSGPAP-RRPLKRFVSKVKRIPDDILEDPALAQAIAQLPSNYNFEVHKTIWRLREAGATCVALQFPEGLLMYACTLADIMERYVPSVEEVVVMGDVTYGACCIDDLGAKAAGADFLVHYGHSCLVPVTCTALKALYVFVEISVDAAHLIDSLRRNLEAPRRVCLMGTIQFISAVHESAKALSDHFASVSVPQARPLSAGEVLGCTSPTLDAAKFDTLIFVADGRFHLEAAMIANPSLEAYRYDPYDKTLTREIYDTPKMLRLRKQAVAAGKVAKRWGVILGTLGRQGNPALVKHAMDLLERSGREAFILLLSEITPQKLELLHEEVDAWVQVACPRLSIDWGHFFPNPVLTAYELEVALGGQAWSEASYPMDYYAKDGGAWGNFNPANAKRQML 420
The following BLAST results are available for this feature:
BLAST of NO03G00100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29993.19.400e-19379.91diphthamide biosynthesis protein 1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00100NO03G00100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00100.1NO03G00100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00100.1.cds1NO03G00100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00100.1.cds2NO03G00100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00100.1.cds3NO03G00100.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00100.1 ID=NO03G00100.1|Name=NO03G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp
ATGGGAGGAAGCAAAATGTTACTGCTGGTGTGGCTGGCGACTTGGTTTAT
AGCCCCGGGAGAAACAGGTGTTCGTGTCTGCAATCCTCGTAGTAGTGCAA
CCCCAAGCCAAAACCAAGCGAAGCATCTCCACCACCCGCGCTTAGCCTCC
CGTCGGTCAGGCCTCTCAATCCCTGCGACGCCACGACACCACACAACGAC
AATGCCCTCGGACATGCGAACATTACCACTACCAGTCCCTTCTGTTCCTT
CCACCGTCACAGCCACCACTTCGACACCTACTACGAGCTCGTCTACGGAC
ATCGTCCCCAGTACTAGCAGGCCCCCACCTCCAGCCAAACGTCAAGTCAA
GCGCTTTGTCGGCAAGGCCAATAGAATCCCGGACGATATTCTGGAAGACC
CTTCCTTGATCCAAGCTATTGCCCAGCTCCCGTCAAACTACAACTTCGAA
ATTCATAAGACAATCTGGCGGCTGCGGGAGGCAGCTGCGACGTGTGTGGC
GCTGCAATTTCCCGAAGGGCTGTTGATGTACGCCTGTACGATTGCTGATA
TGGTGGAACGCTTCGTGCCATCAGTGAAGGAGGTGGTGGTGATGGGGGAT
GTGACATATGGGGCATGCTGTATCGATGACTTGGGGGCCACGGCCGCAGG
GGCTGATTTTCTGGTGCATTATGGGCATAGTTGCTTGGTGCCTGTTACCT
GCACCTCGCTCAAGGCCCTGTATGTCTTTGTGGAGATTAGGGTGGACGCC
ACGCATCTCATCGCGAGTCTGAGTCGAAATTTGGAGGGAGAGAGGAGGGT
GTGCTTGATGGGTACGATCCAGTTTGTATCGGCCGTCCATGAGGCCGCTG
CGGGGCTCAAGGAGCATTTTGCATCTGTACATGTCCCGCAGGCTCGGCCC
ATGTCTGCGGGCGAGGTGCTGGGATGTACGGCTCCGACGTTGGATAGCAC
GGCATTTGATACCTTGGTGTTCGTGGCGGATGGGCGGTTCCATTTGGAGG
CGGCCATGATCGCTAATCCCTCCCTCGAGGCCTACAGGTATAATCCCTAC
GATAAGACTTTGACCAGGGAAGTATACGACACTCCCAAAATGCTGCGTTT
GCGAAAGGCAGCGGTTGAGGCAGGAAAAGGTTCGAGGCGGTGGGGAGTGA
TAATGGGAACCTTGGGTCGACAGGGAAATCCGGCCTTAGTCAAGCACGCG
ATGGACCTGTTGGAGGGAGCGGGGAAAGAGGCTTTCGTCTTGCTCTTGTC
CGAGATTACCCCACAAAAATTAGCCTTGTTAGACGAAGAGGTGGATGCTT
GGGTGCAGATAGCGTGTCCTCGGTTGTCGATAGATTGGGGACTTTTCTTT
ACCACACCTGTCTTGACAGCGTACGAGCTGGAGGTGGCCTTGGGCGGGGA
AGCCTGGTCTGAGACAAGCTACCCCATGGACTACTACGCCAAGGACAGTG
GGGCCTGGGGCAACCTCCATCCCATTAATGCCAAGCGAGTCATGCTCTAG
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protein sequence of NO03G00100.1

>NO03G00100.1-protein ID=NO03G00100.1-protein|Name=NO03G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MGGSKMLLLVWLATWFIAPGETGVRVCNPRSSATPSQNQAKHLHHPRLAS
RRSGLSIPATPRHHTTTMPSDMRTLPLPVPSVPSTVTATTSTPTTSSSTD
IVPSTSRPPPPAKRQVKRFVGKANRIPDDILEDPSLIQAIAQLPSNYNFE
IHKTIWRLREAAATCVALQFPEGLLMYACTIADMVERFVPSVKEVVVMGD
VTYGACCIDDLGATAAGADFLVHYGHSCLVPVTCTSLKALYVFVEIRVDA
THLIASLSRNLEGERRVCLMGTIQFVSAVHEAAAGLKEHFASVHVPQARP
MSAGEVLGCTAPTLDSTAFDTLVFVADGRFHLEAAMIANPSLEAYRYNPY
DKTLTREVYDTPKMLRLRKAAVEAGKGSRRWGVIMGTLGRQGNPALVKHA
MDLLEGAGKEAFVLLLSEITPQKLALLDEEVDAWVQIACPRLSIDWGLFF
TTPVLTAYELEVALGGEAWSETSYPMDYYAKDSGAWGNLHPINAKRVML*
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mRNA from alignment at chr3:28560..30785+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00100.1 ID=NO03G00100.1|Name=NO03G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp|location=Sequence derived from alignment at chr3:28560..30785+ (Nannochloropsis oceanica)
ATGGGAGGAAGCAAAATGTTACTGCTGGTGTGGCTGGCGACTTGGTTTAT
AGCCCCGGGAGAAACAGGTGTTCGTGAGTTCGTGTAACGGAACCACTCGT
CCGACGAGTCGGGGATAGTGATGGCGTTGTTTGGAACAAGGGGATCTATA
CAATCAAGAGTGCTCAGTATGGGTCCCCTCGTTTAAAAGGAGTGCGCATC
ATTAAGCGTAGTGGAGGTCGGAAATGCCGCTTTTGTTCTGTGCACGAGAT
TCGGTCTCACGTTTTAGTCTCATACTTGCACTCCCACAACACACAGGTGT
CTGCAATCCTCGTAGTAGTGCAACCCCAAGCCAAAACCAAGCGAAGCATC
TCCACCACCCGCGCTTAGCCTCCCGTCGGTCAGGCCTCTCAATCCCTGCG
ACGCCACGACACCACACAACGACAATGCCCTCGGACATGCGAACATTACC
ACTACCAGTCCCTTCTGTTCCTTCCACCGTCACAGCCACCACTTCGACAC
CTACTACGAGCTCGTCTACGGACATCGTCCCCAGTACTAGCAGGCCCCCA
CCTCCAGCCAAACGTCAAGTCAAGGTACGTCTTGATGTTCGTTTGCACAA
CCACGATTTTCCATCTCACTTTTTTGCTGGAATAGGAAGGCCCAGGCCAC
CGGTGATGTCGTTTGGCGGCTTGAATTGCACGAGCTACAGTATCATGCAT
TAGCTTCGCTGCAGGCAATGCATGCACACACTCCAGACACTGACCCCTTA
GTTTTTTAACCACTACCGCGTACCAAATTAGTCAAGAAATACTTGATCAA
ACCAATCGATGCACACTTGACTAGGCCAAGTATCAGTTCTGCCAGCAAAG
AGTACATGAGTCGACCTTCTTGCATCTGCGCCTCTGCTACACCCCCGCTG
GAATCGTTTTCCCTTCTCTCTTCAATCTCTCGACACTCCGATCTAGATCA
CACATTAAACTCGTGATTATTTCCCAATGAGAGGGTCTCCTTGCCCTCCT
TTCTTCCCCCCAATCCCCCTCCCTCATTTCCCTCCCTCCCCTTCTCCCTT
CCCCTCCAACCCCTGCACAACGAACAGCGCTTTGTCGGCAAGGCCAATAG
AATCCCGGACGATATTCTGGAAGACCCTTCCTTGATCCAAGCTATTGCCC
AGCTCCCGTCAAACTACAACTTCGAAATTCATAAGACAATCTGGCGGCTG
CGGGAGGCAGCTGCGACGTGTGTGGCGCTGCAATTTCCCGAAGGGCTGTT
GATGTACGCCTGTACGATTGCTGATATGGTGGAACGCTTCGTGCCATCAG
TGAAGGAGGTGGTGGTGATGGGGGATGTGACATATGGGGCATGCTGTATC
GATGACTTGGGGGCCACGGCCGCAGGGGCTGATTTTCTGGTGCATTATGG
GCATAGTTGCTTGGTGCCTGTTACCTGCACCTCGCTCAAGGCCCTGTATG
TCTTTGTGGAGATTAGGGTGGACGCCACGCATCTCATCGCGAGTCTGAGT
CGAAATTTGGAGGGAGAGAGGAGGGTGTGCTTGATGGGTACGATCCAGTT
TGTATCGGCCGTCCATGAGGCCGCTGCGGGGCTCAAGGAGCATTTTGCAT
CTGTACATGTCCCGCAGGCTCGGCCCATGTCTGCGGGCGAGGTGCTGGGA
TGTACGGCTCCGACGTTGGATAGCACGGCATTTGATACCTTGGTGTTCGT
GGCGGATGGGCGGTTCCATTTGGAGGCGGCCATGATCGCTAATCCCTCCC
TCGAGGCCTACAGGTATAATCCCTACGATAAGACTTTGACCAGGGAAGTA
TACGACACTCCCAAAATGCTGCGTTTGCGAAAGGCAGCGGTTGAGGCAGG
AAAAGGTTCGAGGCGGTGGGGAGTGATAATGGGAACCTTGGGTCGACAGG
GAAATCCGGCCTTAGTCAAGCACGCGATGGACCTGTTGGAGGGAGCGGGG
AAAGAGGCTTTCGTCTTGCTCTTGTCCGAGATTACCCCACAAAAATTAGC
CTTGTTAGACGAAGAGGTGGATGCTTGGGTGCAGATAGCGTGTCCTCGGT
TGTCGATAGATTGGGGACTTTTCTTTACCACACCTGTCTTGACAGCGTAC
GAGCTGGAGGTGGCCTTGGGCGGGGAAGCCTGGTCTGAGACAAGCTACCC
CATGGACTACTACGCCAAGGACAGTGGGGCCTGGGGCAACCTCCATCCCA
TTAATGCCAAGCGAGTCATGCTCTAG
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Coding sequence (CDS) from alignment at chr3:28560..30785+

>NO03G00100.1 ID=NO03G00100.1|Name=NO03G00100.1|organism=Nannochloropsis oceanica|type=CDS|length=1500bp|location=Sequence derived from alignment at chr3:28560..30785+ (Nannochloropsis oceanica)
ATGGGAGGAAGCAAAATGTTACTGCTGGTGTGGCTGGCGACTTGGTTTAT
AGCCCCGGGAGAAACAGGTGTTCGTGTCTGCAATCCTCGTAGTAGTGCAA
CCCCAAGCCAAAACCAAGCGAAGCATCTCCACCACCCGCGCTTAGCCTCC
CGTCGGTCAGGCCTCTCAATCCCTGCGACGCCACGACACCACACAACGAC
AATGCCCTCGGACATGCGAACATTACCACTACCAGTCCCTTCTGTTCCTT
CCACCGTCACAGCCACCACTTCGACACCTACTACGAGCTCGTCTACGGAC
ATCGTCCCCAGTACTAGCAGGCCCCCACCTCCAGCCAAACGTCAAGTCAA
GCGCTTTGTCGGCAAGGCCAATAGAATCCCGGACGATATTCTGGAAGACC
CTTCCTTGATCCAAGCTATTGCCCAGCTCCCGTCAAACTACAACTTCGAA
ATTCATAAGACAATCTGGCGGCTGCGGGAGGCAGCTGCGACGTGTGTGGC
GCTGCAATTTCCCGAAGGGCTGTTGATGTACGCCTGTACGATTGCTGATA
TGGTGGAACGCTTCGTGCCATCAGTGAAGGAGGTGGTGGTGATGGGGGAT
GTGACATATGGGGCATGCTGTATCGATGACTTGGGGGCCACGGCCGCAGG
GGCTGATTTTCTGGTGCATTATGGGCATAGTTGCTTGGTGCCTGTTACCT
GCACCTCGCTCAAGGCCCTGTATGTCTTTGTGGAGATTAGGGTGGACGCC
ACGCATCTCATCGCGAGTCTGAGTCGAAATTTGGAGGGAGAGAGGAGGGT
GTGCTTGATGGGTACGATCCAGTTTGTATCGGCCGTCCATGAGGCCGCTG
CGGGGCTCAAGGAGCATTTTGCATCTGTACATGTCCCGCAGGCTCGGCCC
ATGTCTGCGGGCGAGGTGCTGGGATGTACGGCTCCGACGTTGGATAGCAC
GGCATTTGATACCTTGGTGTTCGTGGCGGATGGGCGGTTCCATTTGGAGG
CGGCCATGATCGCTAATCCCTCCCTCGAGGCCTACAGGTATAATCCCTAC
GATAAGACTTTGACCAGGGAAGTATACGACACTCCCAAAATGCTGCGTTT
GCGAAAGGCAGCGGTTGAGGCAGGAAAAGGTTCGAGGCGGTGGGGAGTGA
TAATGGGAACCTTGGGTCGACAGGGAAATCCGGCCTTAGTCAAGCACGCG
ATGGACCTGTTGGAGGGAGCGGGGAAAGAGGCTTTCGTCTTGCTCTTGTC
CGAGATTACCCCACAAAAATTAGCCTTGTTAGACGAAGAGGTGGATGCTT
GGGTGCAGATAGCGTGTCCTCGGTTGTCGATAGATTGGGGACTTTTCTTT
ACCACACCTGTCTTGACAGCGTACGAGCTGGAGGTGGCCTTGGGCGGGGA
AGCCTGGTCTGAGACAAGCTACCCCATGGACTACTACGCCAAGGACAGTG
GGGCCTGGGGCAACCTCCATCCCATTAATGCCAAGCGAGTCATGCTCTAG
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Synonyms
Publications