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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:1487320..1489822 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G05600.1 vs.
Match: EWM30169.1 (set and mynd domain-containing protein 1-like isoform 2 [Nannochloropsis gaditana]) HSP 1 Score: 642.1 bits (1655), Expect = 2.100e-180 Identity = 388/724 (53.59%), Postives = 479/724 (66.16%), Query Frame = 0
Query: 6 EQPPPPNDEDDQAEVD----EGGDNIEDATSQERIKKKKRKKKKKATSSTNCSVYIPPAFQSNVRVIISPALGVGRCAVAARALAPGDLIFEEEPIALVNFSRHAHEYCVYCGKYGPRGSGVLVPATDLVVDGTVMCCAAPACAARRGAAHRLAGKEAWARIAEIAKDEKIDSHLLTMVLLLICQRHLARHGG---------------GEEQQLQQRWMDVDALMDHWEEQTAEWKECVGKAMTRLIQHVPEDVRGGGGGGGGGGGLSVEDAARLTCVVNVNSHGVGTTRSFNQMRGLGLFPLLACLNHSCRPNCAYVFDTVKGGNIGVRALEAIEEGEELFVHYTNLLVSRKVRKEELRTTKYFDCGCRRCEGEGGREGEADRLMAALCCAACGLEGRVLSPGEEPAAAASEAAATALLRLAEEEEE-VDGTKGKKKKGKGKGGGGGGGGGGGGGGGGGGEGKDGGEKNEGGTKGNWGTTGV-NDGMAGLTLEEGEGGVEESKGGK---TKEKDGLGKEGSEESKPAAAAAAAAAAAAAA---SSHRCSLCSAVFSVQEISEYLERVEVGTVQGQLLLRSQTDGAAKQHLEDLLTLHTAKAKEGGRAGGREGGMPQVVRGTPSRLRLHPKHYLLVEPVAMLINLDVKLKEYAAAITHFRRMIETMDNVLPPLFPEKGDYLHGLAACLYEYLRPRLGMLPPRNAMMIKAEMKVLFGRAWEVRRV 703
+ P DE AE + E + D TSQ++ KK K+KK S N +VYIPP +++N+R++ SP GVGRCAVA ++LAPG+LIFEEEP+AL+NFSR+A EYCV+CGK+ GSG L D+ +DG CCA AC RG+AHRLAGK W R+AEIAK+EK D +LL+MV+LL+CQ HLAR G G E+ LQ W DV+ L DHWEEQ EWK+CV KAM RL++H PE +R G G G VEDA RL C+VNVNSHG+G+ RSFN MRG+G+FPLLACLNHSCRPNCAYVFD+ + G + +RAL+ I G EL VHYTNLLV R VR++EL+ TK+F C C RC+GEG E +AD L+ LCCA CGLEGRV++ P A +AAA ALL EEE+E +G K KKKK K E KD GE EG ++ GV + +A LT+E EE + G T+ +GL EG S PA A A A A ++ RC C A F+ +E+ YLERVE+GTVQGQLL+ QT GAAKQHL+D++ LHTA A GR +EGG RGTPSRLRLHP+HYLL+EPVAMLINL+VK+KEYAAAI+ FRRM +TMD++LP FPEKGDYLHGLAACLYEYLRPRL LP ++ +IK EMK+LF RA +VR +
Sbjct: 22 DHPVQLGDERQDAEANGKECEAAEKTTDRTSQKKKKKTKKKKNVPRISDPN-AVYIPPIYRNNLRIVASPRPGVGRCAVAVKSLAPGELIFEEEPVALLNFSRYASEYCVFCGKFAAAGSGRLTSVRDVFIDGPTYCCADGACT-NRGSAHRLAGKSVWTRVAEIAKEEKADVYLLSMVVLLLCQWHLARGQGMGEDAGELAEVTEGIGRERCLQ--WRDVEKLTDHWEEQKEEWKQCVAKAMRRLLKHFPEQMRCRGSDGEEGEEAGVEDAVRLACLVNVNSHGIGSGRSFNHMRGMGIFPLLACLNHSCRPNCAYVFDS-ETGKMCLRALDGIPAGAELCVHYTNLLVPRDVRQKELQETKHFLCACSRCQGEGEGE-DADALLGTLCCAECGLEGRVVAGPASPVQGAHDAAAAALLLAEEEEKERTEGKKAKKKKKKK-------------------EKKDLGE--EGSSQKEVEGEGVAEERLASLTMEPK--APEEPRSGVKTGTESGEGLDSEGGLAS-PAGATAQNEAIAEETDEEAARRCIKCGATFTTKEVDAYLERVEIGTVQGQLLVHGQTLGAAKQHLDDMMLLHTATATREGR---KEGGG---ARGTPSRLRLHPRHYLLIEPVAMLINLNVKMKEYAAAISLFRRMNDTMDSLLPTFFPEKGDYLHGLAACLYEYLRPRLETLPGKSQALIKREMKILFTRAVQVREI 709
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G05600.1 ID=NO02G05600.1|Name=NO02G05600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2337bp AACAGCACCACCTGTAATTGTGCCGTCAAGACGCTGGTTCAGGCGACCGG ATTTCAACTCGCACTGCTTCATTTCCTGCCCTGAATAGAAAACACTCCGC GTCCCTCTCCAGCATGACCCCACCCGCCGAGCAACCCCCGCCGCCCAATG ATGAAGATGACCAAGCCGAGGTGGATGAGGGAGGGGACAACATCGAGGAC GCCACTAGTCAAGAAAGGATAAAGAAGAAGAAAAGGAAGAAAAAGAAGAA GGCCACAAGCAGTACCAATTGCAGCGTCTACATACCCCCGGCCTTTCAAA GCAATGTGCGTGTCATCATCTCGCCTGCCCTGGGTGTGGGTCGTTGCGCC GTTGCCGCTAGAGCCCTCGCACCCGGCGATCTCATTTTCGAGGAAGAACC TATCGCCTTGGTGAATTTCTCGCGGCATGCGCACGAGTACTGTGTGTATT GCGGCAAGTACGGGCCAAGAGGCAGTGGCGTTCTTGTCCCCGCCACAGAC CTCGTTGTAGATGGTACTGTGATGTGTTGTGCTGCTCCAGCTTGTGCCGC GAGAAGAGGAGCCGCGCATCGGTTGGCGGGAAAAGAGGCCTGGGCACGCA TTGCGGAGATTGCAAAGGATGAAAAGATAGATTCACATTTATTAACCATG GTGTTGCTGTTGATCTGTCAAAGGCATTTAGCTCGCCATGGGGGAGGGGA AGAGCAGCAGCTGCAACAGAGGTGGATGGATGTGGATGCGCTGATGGATC ATTGGGAAGAGCAGACGGCAGAGTGGAAGGAGTGCGTGGGGAAGGCGATG ACGAGGTTGATTCAACATGTGCCGGAGGATGTCCGTGGAGGAGGAGGAGG AGGAGGAGGAGGAGGGGGATTGAGTGTGGAGGATGCTGCCAGGCTGACGT GTGTGGTGAATGTGAATAGTCATGGGGTAGGGACGACGAGAAGCTTCAAT CAGATGCGGGGTCTGGGACTCTTTCCACTGCTGGCGTGCTTAAACCACTC GTGCCGACCGAATTGTGCCTATGTCTTTGATACGGTGAAAGGGGGAAATA TAGGGGTGAGGGCATTAGAGGCCATTGAAGAGGGTGAAGAGCTCTTCGTG CATTATACCAACTTGTTGGTGTCGCGGAAGGTGAGAAAAGAGGAACTGCG GACGACCAAGTACTTTGATTGTGGGTGTCGGCGGTGTGAGGGGGAGGGAG GGAGGGAAGGAGAGGCGGACCGCTTGATGGCGGCGTTGTGTTGTGCAGCG TGTGGGTTGGAGGGGAGGGTGCTGTCGCCGGGGGAGGAACCGGCAGCAGC AGCGAGTGAAGCAGCAGCCACGGCATTGTTGCGTTTGGCGGAAGAGGAGG AGGAAGTGGACGGGACGAAAGGAAAGAAGAAGAAAGGAAAAGGAAAAGGA GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG AGAGGGGAAAGATGGGGGAGAGAAGAACGAGGGAGGGACAAAGGGGAATT GGGGAACGACAGGTGTGAACGATGGCATGGCAGGGCTAACGCTTGAGGAA GGGGAAGGGGGAGTGGAGGAAAGCAAGGGGGGAAAGACGAAAGAGAAAGA CGGGCTGGGAAAAGAAGGGAGTGAAGAGAGCAAGCCAGCAGCAGCAGCAG CAGCAGCGGCAGCGGCGGCGGCAGCAGCGTCATCCCATCGCTGCAGTCTG TGCTCCGCTGTCTTTAGCGTGCAGGAGATTTCCGAGTACCTGGAACGGGT GGAGGTTGGGACGGTGCAAGGACAGCTGTTGCTTCGGTCCCAGACCGACG GCGCGGCGAAGCAGCATTTGGAAGACCTCTTGACACTGCACACGGCCAAG GCGAAGGAGGGGGGAAGGGCGGGAGGGAGGGAGGGAGGGATGCCACAGGT GGTCCGGGGAACGCCGTCGCGGTTGAGGTTGCACCCGAAGCATTATCTCT TGGTCGAGCCGGTAGCCATGTTGATTAATCTGGACGTGAAGCTGAAAGAG TACGCAGCGGCGATCACGCACTTCCGTCGTATGATCGAGACCATGGACAA CGTCCTTCCTCCCCTCTTTCCCGAGAAGGGGGACTACCTCCACGGGCTTG CCGCCTGTCTGTACGAATACCTGCGGCCCCGGCTGGGTATGTTACCACCA AGGAATGCGATGATGATCAAGGCCGAGATGAAAGTGCTCTTCGGGCGGGC GTGGGAAGTACGGAGGGTGGGCTTAGGGGAGGGGCACCCGTTGACGATGG AGAGCAGGGAAATGGTGGAGGCCATTGCATCGGCAGGGCAGGGGTGAGGG GAAAAGGGAGAGAGGGAGGGAGGGAGGGGGCCCTGAG back to topprotein sequence of NO02G05600.1 >NO02G05600.1-protein ID=NO02G05600.1-protein|Name=NO02G05600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=728bp MTPPAEQPPPPNDEDDQAEVDEGGDNIEDATSQERIKKKKRKKKKKATSS TNCSVYIPPAFQSNVRVIISPALGVGRCAVAARALAPGDLIFEEEPIALV NFSRHAHEYCVYCGKYGPRGSGVLVPATDLVVDGTVMCCAAPACAARRGA AHRLAGKEAWARIAEIAKDEKIDSHLLTMVLLLICQRHLARHGGGEEQQL QQRWMDVDALMDHWEEQTAEWKECVGKAMTRLIQHVPEDVRGGGGGGGGG GGLSVEDAARLTCVVNVNSHGVGTTRSFNQMRGLGLFPLLACLNHSCRPN CAYVFDTVKGGNIGVRALEAIEEGEELFVHYTNLLVSRKVRKEELRTTKY FDCGCRRCEGEGGREGEADRLMAALCCAACGLEGRVLSPGEEPAAAASEA AATALLRLAEEEEEVDGTKGKKKKGKGKGGGGGGGGGGGGGGGGGGEGKD GGEKNEGGTKGNWGTTGVNDGMAGLTLEEGEGGVEESKGGKTKEKDGLGK EGSEESKPAAAAAAAAAAAAAASSHRCSLCSAVFSVQEISEYLERVEVGT VQGQLLLRSQTDGAAKQHLEDLLTLHTAKAKEGGRAGGREGGMPQVVRGT PSRLRLHPKHYLLVEPVAMLINLDVKLKEYAAAITHFRRMIETMDNVLPP LFPEKGDYLHGLAACLYEYLRPRLGMLPPRNAMMIKAEMKVLFGRAWEVR RVGLGEGHPLTMESREMVEAIASAGQG* back to topmRNA from alignment at chr2:1487320..1489822+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G05600.1 ID=NO02G05600.1|Name=NO02G05600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2503bp|location=Sequence derived from alignment at chr2:1487320..1489822+ (Nannochloropsis oceanica) AACAGCACCACCTGTAATTGTGCCGTCAAGACGCTGGTTCAGGCGACCGG
ATTTCAACTCGCACTGCTTCATTTCCTGCCCTGAATAGAAAACACTCCGC
GTCCCTCTCCAGCATGACCCCACCCGCCGAGCAACCCCCGCCGCCCAATG
ATGAAGATGACCAAGCCGAGGTGGATGAGGGAGGGGACAACATCGAGGAC
GCCACTAGTCAAGAAAGGATAAAGAAGAAGAAAAGGAAGAAAAAGAAGAA
GGCCACAAGCAGTACCAATTGCAGCGTCTACATACCCCCGGCCTTTCAAA
GCAATGTGCGTGTCATCATCTCGCCTGCCCTGGGTGTGGGTCGTTGCGCC
GTTGCCGCTAGAGCCCTCGCACCCGGCGATCTCATTTTCGAGGAAGAACC
TATCGCCTTGGTGAATTTCTCGCGGCATGCGCACGAGTACTGTGTGTATT
GCGGCAAGTACGGGCCAAGAGGCAGTGGCGTTCTTGTCCCCGCCACAGAC
CTCGTTGTAGATGGTACTGTGATGTGTTGTGCTGCTCCAGCTTGTGCCGC
GAGAAGAGGAGCCGCGCATCGGTTGGCGGGAAAAGAGGCCTGGGCACGCA
TTGCGGAGATTGCAAAGGATGAAAAGATAGATTCACATTTATTAACCATG
GTGTTGCTGTTGATCTGTCAAAGGCATTTAGCTCGCCATGGGGGAGGGGA
AGAGCAGCAGCTGCAACAGAGGTGGATGGATGTGGATGCGCTGATGGATC
ATTGGGAAGAGCAGACGGCAGAGTGGAAGGAGTGCGTGGGGAAGGCGATG
ACGAGGTTGATTCAACATGTGCCGGAGGATGTCCGTGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGGGGATTGAGTGTGGAGGATGCTGCCAGGCTGACGT
GTGTGGTGAATGTGAATAGTCATGGGGTAGGGACGACGAGAAGCTTCAAT
CAGATGCGGGGTCTGGGACTCTTTCCACTGCTGGCGTGCTTAAACCACTC
GTGCCGACCGAATTGTGCCTATGTCTTTGATACGGTGAAAGGGGGAAATA
TAGGGGTGAGGGCATTAGAGGCCATTGAAGAGGGTGAAGAGCTCTTCGTG
CATTATACCAACTTGTTGGTGTCGCGGAAGGTGAGAAAAGAGGAACTGCG
GACGACCAAGTACTTTGATTGTGGGTGTCGGCGGTGTGAGGGGGAGGGAG
GGAGGGAAGGAGAGGCGGACCGCTTGATGGCGGCGTTGTGTTGTGCAGCG
TGTGGGTTGGAGGGGAGGGTGCTGTCGCCGGGGGAGGAACCGGCAGCAGC
AGCGAGTGAAGCAGCAGCCACGGCATTGTTGCGTTTGGCGGAAGAGGAGG
AGGAAGTGGACGGGACGAAAGGAAAGAAGAAGAAAGGAAAAGGAAAAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGAGGGGAAAGATGGGGGAGAGAAGAACGAGGGAGGGACAAAGGGGAATT
GGGGAACGACAGGTGTGAACGATGGCATGGCAGGGCTAACGCTTGAGGAA
GGGGAAGGGGGAGTGGAGGAAAGCAAGGGGGGAAAGACGAAAGAGAAAGA
CGGGCTGGGAAAAGAAGGGAGTGAAGAGAGCAAGCCAGCAGCAGCAGCAG
CAGCAGCGGCAGCGGCGGCGGCAGCAGCGTCATCCCATCGCTGCAGTCTG
TGCTCCGCTGTCTTTAGCGTGCAGGAGATTTCCGAGTACCTGGAACGGGT
GGAGGTTGGGACGGTGCAAGGACAGCTGTTGCTTCGGTCCCAGACCGACG
GCGCGGCGAAGCAGCATTTGGAAGACCTCTTGACACTGCACACGGCCAAG
GCGAAGGAGGGGGGAAGGGCGGGAGGGAGGGAGGGAGGGATGCCACAGGT
GGTCCGGGGAACGCCGTCGCGGTTGAGGTTGCACCCGAAGCATTATCTCT
TGGTCGAGCCGGTAGCCATGTTGATTAATCTGGACGTGAAGCTGAAAGAG
TACGCAGGTAAGGAGAAAGGGAAGGAGGACGTGCGTGAGGGTCGGAGGGA
AGGAGGGAGAGGGTTTCGGTGCATATGGACCGAACCTGCCTGCCAATGTG
ATTGACCGGTCGTCTTACCCTCCCCTCCTTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCTTTCCCTCCTCTAGCGGCGATCACGCACTTCCGTCGTATGA
TCGAGACCATGGACAACGTCCTTCCTCCCCTCTTTCCCGAGAAGGGGGAC
TACCTCCACGGGCTTGCCGCCTGTCTGTACGAATACCTGCGGCCCCGGCT
GGGTATGTTACCACCAAGGAATGCGATGATGATCAAGGCCGAGATGAAAG
TGCTCTTCGGGCGGGCGTGGGAAGTACGGAGGGTGGGCTTAGGGGAGGGG
CACCCGTTGACGATGGAGAGCAGGGAAATGGTGGAGGCCATTGCATCGGC
AGGGCAGGGGTGAGGGGAAAAGGGAGAGAGGGAGGGAGGGAGGGGGCCCT
GAG back to topCoding sequence (CDS) from alignment at chr2:1487320..1489822+ >NO02G05600.1 ID=NO02G05600.1|Name=NO02G05600.1|organism=Nannochloropsis oceanica|type=CDS|length=2184bp|location=Sequence derived from alignment at chr2:1487320..1489822+ (Nannochloropsis oceanica) ATGACCCCACCCGCCGAGCAACCCCCGCCGCCCAATGATGAAGATGACCA AGCCGAGGTGGATGAGGGAGGGGACAACATCGAGGACGCCACTAGTCAAG AAAGGATAAAGAAGAAGAAAAGGAAGAAAAAGAAGAAGGCCACAAGCAGT ACCAATTGCAGCGTCTACATACCCCCGGCCTTTCAAAGCAATGTGCGTGT CATCATCTCGCCTGCCCTGGGTGTGGGTCGTTGCGCCGTTGCCGCTAGAG CCCTCGCACCCGGCGATCTCATTTTCGAGGAAGAACCTATCGCCTTGGTG AATTTCTCGCGGCATGCGCACGAGTACTGTGTGTATTGCGGCAAGTACGG GCCAAGAGGCAGTGGCGTTCTTGTCCCCGCCACAGACCTCGTTGTAGATG GTACTGTGATGTGTTGTGCTGCTCCAGCTTGTGCCGCGAGAAGAGGAGCC GCGCATCGGTTGGCGGGAAAAGAGGCCTGGGCACGCATTGCGGAGATTGC AAAGGATGAAAAGATAGATTCACATTTATTAACCATGGTGTTGCTGTTGA TCTGTCAAAGGCATTTAGCTCGCCATGGGGGAGGGGAAGAGCAGCAGCTG CAACAGAGGTGGATGGATGTGGATGCGCTGATGGATCATTGGGAAGAGCA GACGGCAGAGTGGAAGGAGTGCGTGGGGAAGGCGATGACGAGGTTGATTC AACATGTGCCGGAGGATGTCCGTGGAGGAGGAGGAGGAGGAGGAGGAGGA GGGGGATTGAGTGTGGAGGATGCTGCCAGGCTGACGTGTGTGGTGAATGT GAATAGTCATGGGGTAGGGACGACGAGAAGCTTCAATCAGATGCGGGGTC TGGGACTCTTTCCACTGCTGGCGTGCTTAAACCACTCGTGCCGACCGAAT TGTGCCTATGTCTTTGATACGGTGAAAGGGGGAAATATAGGGGTGAGGGC ATTAGAGGCCATTGAAGAGGGTGAAGAGCTCTTCGTGCATTATACCAACT TGTTGGTGTCGCGGAAGGTGAGAAAAGAGGAACTGCGGACGACCAAGTAC TTTGATTGTGGGTGTCGGCGGTGTGAGGGGGAGGGAGGGAGGGAAGGAGA GGCGGACCGCTTGATGGCGGCGTTGTGTTGTGCAGCGTGTGGGTTGGAGG GGAGGGTGCTGTCGCCGGGGGAGGAACCGGCAGCAGCAGCGAGTGAAGCA GCAGCCACGGCATTGTTGCGTTTGGCGGAAGAGGAGGAGGAAGTGGACGG GACGAAAGGAAAGAAGAAGAAAGGAAAAGGAAAAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGGGAAAGAT GGGGGAGAGAAGAACGAGGGAGGGACAAAGGGGAATTGGGGAACGACAGG TGTGAACGATGGCATGGCAGGGCTAACGCTTGAGGAAGGGGAAGGGGGAG TGGAGGAAAGCAAGGGGGGAAAGACGAAAGAGAAAGACGGGCTGGGAAAA GAAGGGAGTGAAGAGAGCAAGCCAGCAGCAGCAGCAGCAGCAGCGGCAGC GGCGGCGGCAGCAGCGTCATCCCATCGCTGCAGTCTGTGCTCCGCTGTCT TTAGCGTGCAGGAGATTTCCGAGTACCTGGAACGGGTGGAGGTTGGGACG GTGCAAGGACAGCTGTTGCTTCGGTCCCAGACCGACGGCGCGGCGAAGCA GCATTTGGAAGACCTCTTGACACTGCACACGGCCAAGGCGAAGGAGGGGG GAAGGGCGGGAGGGAGGGAGGGAGGGATGCCACAGGTGGTCCGGGGAACG CCGTCGCGGTTGAGGTTGCACCCGAAGCATTATCTCTTGGTCGAGCCGGT AGCCATGTTGATTAATCTGGACGTGAAGCTGAAAGAGTACGCAGCGGCGA TCACGCACTTCCGTCGTATGATCGAGACCATGGACAACGTCCTTCCTCCC CTCTTTCCCGAGAAGGGGGACTACCTCCACGGGCTTGCCGCCTGTCTGTA CGAATACCTGCGGCCCCGGCTGGGTATGTTACCACCAAGGAATGCGATGA TGATCAAGGCCGAGATGAAAGTGCTCTTCGGGCGGGCGTGGGAAGTACGG AGGGTGGGCTTAGGGGAGGGGCACCCGTTGACGATGGAGAGCAGGGAAAT GGTGGAGGCCATTGCATCGGCAGGGCAGGGGTGA back to top
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