NO02G05500.1, NO02G05500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05500.1
Unique NameNO02G05500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length780
Alignment locationchr2:1463808..1464687 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1463808..1464687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO02G05500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05500NO02G05500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05500.1NO02G05500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05500.1.cds1NO02G05500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05500.1.cds2NO02G05500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05500.1 ID=NO02G05500.1|Name=NO02G05500.1|organism=Nannochloropsis oceanica|type=mRNA|length=780bp
ATGGAAGAACAACAGCTGGTGGTGGTGTTGCCGGTGGTGGTGGCAACCAC
GAGAGCAGCAGCAGTAGCTCCTAGGAATCCCTCTGTGCTGGGTTGGAGAG
AGACTCCGTCAGCCAGCATTCCTCATCTTTTCCCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCTTCCTCCCTCCACCCCCACTTTCTCCTGGACC
TCGCCTCCCTTCTACAAAGCGCATCGCCAACAATCAGATGGCGTTGCATT
CGTCTGCACTTCATTAGGAGGGCGATTACTATATGCCACGTGCTCGATTT
TCCCGTTGGAAAACACGGGGGTTAAAAAAATCTCAGGAGAAACCAAGGGG
TCTTTGTGGTAGAGGGGGAGGAAGAGGGGGAGGAAGGGGAAGGAGGGAAG
GGAAATGGACGAATGTTGGGTATGAAGCGTTCATTTGTGGACATGTGTGT
CATGTGGAGATGGTGGGGTTGGAGACACAGGAGAGGGGAGGATGGACTGT
CCACCCCGATGTGAATAATGGCTGAGGCCCTCTCTACTTTTGCGAGCTAG
AAAGGAGGGAGGGCCGAAGGAAAGGAAGGAGGGAAGGGGGAGAGGAGGGG
CGATTGGTAAAGATGACGGGTGGAGGAAAGACAAGGAAGCGAGGGATAAT
TTACAAATAGAGCCCCTGATGACAAGAATCAAGCCAACAAAATATAAGCC
AACGGCAAAAGCAACAAAGGAGTGGAGGGC
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protein sequence of NO02G05500.1

>NO02G05500.1-protein ID=NO02G05500.1-protein|Name=NO02G05500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MEEQQLVVVLPVVVATTRAAAVAPRNPSVLGWRETPSASIPHLFPSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSLHPHFLLDLASLLQSASPTIRWRCI
RLHFIRRAITICHVLDFPVGKHGG*
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mRNA from alignment at chr2:1463808..1464687-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05500.1 ID=NO02G05500.1|Name=NO02G05500.1|organism=Nannochloropsis oceanica|type=mRNA|length=880bp|location=Sequence derived from alignment at chr2:1463808..1464687- (Nannochloropsis oceanica)
ATGGAAGAACAACAGCTGGTGGTGGTGTTGCCGGTGGTGGTGGCAACCAC
GAGGTGGGCACGGAAAAGGAGAAGGAGGAGGCAGTCGCATTAATGAACAA
GTGGAATCCGCAAGCCCAGCCTCTGCTTCCCCCGTCTTATTCCTTGCCGC
TAGAGCAGCAGCAGTAGCTCCTAGGAATCCCTCTGTGCTGGGTTGGAGAG
AGACTCCGTCAGCCAGCATTCCTCATCTTTTCCCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCTTCCTCCCTCCACCCCCACTTTCTCCTGGACC
TCGCCTCCCTTCTACAAAGCGCATCGCCAACAATCAGATGGCGTTGCATT
CGTCTGCACTTCATTAGGAGGGCGATTACTATATGCCACGTGCTCGATTT
TCCCGTTGGAAAACACGGGGGTTAAAAAAATCTCAGGAGAAACCAAGGGG
TCTTTGTGGTAGAGGGGGAGGAAGAGGGGGAGGAAGGGGAAGGAGGGAAG
GGAAATGGACGAATGTTGGGTATGAAGCGTTCATTTGTGGACATGTGTGT
CATGTGGAGATGGTGGGGTTGGAGACACAGGAGAGGGGAGGATGGACTGT
CCACCCCGATGTGAATAATGGCTGAGGCCCTCTCTACTTTTGCGAGCTAG
AAAGGAGGGAGGGCCGAAGGAAAGGAAGGAGGGAAGGGGGAGAGGAGGGG
CGATTGGTAAAGATGACGGGTGGAGGAAAGACAAGGAAGCGAGGGATAAT
TTACAAATAGAGCCCCTGATGACAAGAATCAAGCCAACAAAATATAAGCC
AACGGCAAAAGCAACAAAGGAGTGGAGGGC
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Coding sequence (CDS) from alignment at chr2:1463808..1464687-

>NO02G05500.1 ID=NO02G05500.1|Name=NO02G05500.1|organism=Nannochloropsis oceanica|type=CDS|length=375bp|location=Sequence derived from alignment at chr2:1463808..1464687- (Nannochloropsis oceanica)
ATGGAAGAACAACAGCTGGTGGTGGTGTTGCCGGTGGTGGTGGCAACCAC
GAGAGCAGCAGCAGTAGCTCCTAGGAATCCCTCTGTGCTGGGTTGGAGAG
AGACTCCGTCAGCCAGCATTCCTCATCTTTTCCCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCTTCCTCCCTCCACCCCCACTTTCTCCTGGACC
TCGCCTCCCTTCTACAAAGCGCATCGCCAACAATCAGATGGCGTTGCATT
CGTCTGCACTTCATTAGGAGGGCGATTACTATATGCCACGTGCTCGATTT
TCCCGTTGGAAAACACGGGGGTTAA
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Synonyms
Publications