NO02G05420.1, NO02G05420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05420.1
Unique NameNO02G05420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2788
Alignment locationchr2:1443893..1447206 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1443893..1447206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05420.1 vs.
Match: EWM30156.1 (fatty acid desaturase domain protein [Nannochloropsis gaditana])

HSP 1 Score: 629.0 bits (1621), Expect = 1.000e-176
Identity = 307/399 (76.94%), Postives = 347/399 (86.97%), Query Frame = 0 
Query:    2 PPQNVHMLSRDTLPSSSSLVDEDGSPRYPGTSTHGGASSFSSPSTTATATGTMPRTTSISHLSQEATKVKIIRDAIRAEDKRLRSQYFLLREEWQDTVGAAIFLTAACTWALLSYAWYIGALSTPFLIIGNALAISLLHEMEHDLIHDLYFKKNKAVQNAMFAFIWVIKSNANPWWRRYYHLRHHQYAGQVVDVEERLIGLGLPWNSFKRLLVTFTPAATLLIADDIVKDDPDFSKQVLVRYNSPVIAFSTVAMVIHLCHCLGVGELLVAAGILPVGFHEALLRYLLPFLVLYNSTVNLPNVLRQSSLVIISTYCHYYGDIPERDVFFQTQILNHPLLWPFQMFCFNFGATHIIHHFVTRQPFYLRQLTAFRVTPVMLEQGCRHNDLGNHFRANRWGRK 401
            PP   H  +R  L   +   D+DGSPRYP +ST          S++ATATG +PRT SISHLSQEA KVKIIR+AIRAEDKRLR++YF LREEWQDT+G  I+LTAA +WA +SY+WY G ++TP  I+GNALAISLLHEMEHDLIHDLYFK+ K VQNAMFAFIWVIKSNANPWWRRYYHLRHHQYAGQVVDVEERLIGLGLPW S+KR+LVTFTPAATLLIA+DI KDDP+FSK+VLVRYN+PVIAFSTVAMV+HL + LGVGE LV+ GI P  F+  LLR +LPF+V+YN TVNLPNVLRQS LVIISTYCHYYGDIPERDVFFQTQ+LNHP+LWPFQ+FCFNFGATHIIHHFVTRQPFYLRQLTAF+VTP++LEQGCRHNDLGNHFRANRWG++
Sbjct:   69 PPPASH--NRIALSLLTPFPDDDGSPRYPASST------IDRTSSSATATGDIPRTASISHLSQEAAKVKIIREAIRAEDKRLRARYFFLREEWQDTIGTVIYLTAALSWAAISYSWYCGLIATPVTIVGNALAISLLHEMEHDLIHDLYFKRVKWVQNAMFAFIWVIKSNANPWWRRYYHLRHHQYAGQVVDVEERLIGLGLPWYSWKRILVTFTPAATLLIANDIAKDDPEFSKKVLVRYNAPVIAFSTVAMVLHLLYYLGVGEALVSVGIFPPAFYAFLLRVVLPFVVVYNGTVNLPNVLRQSCLVIISTYCHYYGDIPERDVFFQTQVLNHPVLWPFQLFCFNFGATHIIHHFVTRQPFYLRQLTAFKVTPILLEQGCRHNDLGNHFRANRWGKE 459
The following BLAST results are available for this feature:
BLAST of NO02G05420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30156.11.000e-17676.94fatty acid desaturase domain protein [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05420NO02G05420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05420.1NO02G05420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05420.1.cds1NO02G05420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05420.1.cds2NO02G05420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05420.1.cds3NO02G05420.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05420.1 ID=NO02G05420.1|Name=NO02G05420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2788bp
ATGGCGGTCCAATAAAAAATTACACAATGCCCTTGTGTTGCTTCTACAGT
AATAGCGTCCATGAATAACTGCAGGGCAGGGTCAGTGGTATATGGTGGAC
GAAGTGGCTCTTAATCAGAGATGGAATGCCGGGTCAGGTTATGATGTCCG
GAGGTGCTTTCTGATGGGGTGTGGAGGCAGGGGGGGACAGAAGAGTTCAT
ATTCCCCACGTTTCTTTGCTTTGCATGCTCGGAACTTTCTTTATATTTAA
ACAAGATGCACAGATGATTTCGAGCTGTCAATGGCGTCTCGGAAAATGTG
CACAGCGGTCACTCACGGATGTGCTAAGAGGATCATATGGGCCGGTCGGT
CCCAGAGGAAAGTCTCTCGAGCGCGACGAACGCTCGAGCTAAGAGATCCA
CATCAGCCAATGCGCTCAAATAGCGTGGGATTCATGGTACTTGGTCCCGC
GAGCATCTTTGTGCATGTTTGGCACGATATTGGGTGTGGTTGATGTGCGT
TTCAAGCGAGCTTGAGCCCCTTCGTCTCTGCCCATGTCTGTTGCCTCGTC
ACCTCCTCGACGAAAGCAGAGAGCAAATGCTGCGTCACCCCCAGGTGTAT
TGCCGGCCCCCCTTCCTCTTTCTTTTTTACAAGCGCCCGCGCTCCTTCCT
GCTTCTTGATGTTGGTACCTGGCATTATTGCGTGCACTTTCGATGTGTCT
CTCCTTTTATCATCATTCTCTCTTCCGGCATTCACGCACACAATATGACA
GCCTCGTCACATCGCGATCGCCCAAGGAGTCCGCCGACCGTCGCGGTGCC
AGCAGCAAGAACACTGCGCAGATCCGTCACCACGTGCATAGACTACAGCT
AAGAAACCACCATCACCATGCCGCCTCAAAATGTGCACATGCTCAGCCGG
GACACCCTTCCGTCCTCAAGCTCCCTCGTCGATGAAGACGGCTCCCCCCG
CTACCCCGGCACGTCTACCCATGGGGGTGCTTCCTCCTTCTCCTCCCCCT
CCACCACGGCAACTGCCACTGGCACAATGCCGCGCACCACCTCCATCTCC
CACCTCAGCCAAGAGGCCACCAAGGTCAAAATCATCCGCGACGCCATCCG
GGCGGAAGACAAGCGGCTGCGCTCCCAATATTTCCTCCTGCGTGAGGAGT
GGCAAGACACAGTCGGTGCGGCTATCTTCCTGACGGCCGCCTGTACATGG
GCCTTGCTCTCCTACGCGTGGTACATCGGCGCCCTTTCCACCCCTTTCCT
CATCATAGGCAATGCCCTGGCCATCTCGCTGTTGCATGAGATGGAGCACG
ACTTAATCCACGACTTGTATTTCAAGAAGAACAAGGCCGTTCAAAATGCC
ATGTTCGCATTTATCTGGGTGATCAAGAGCAACGCCAACCCCTGGTGGCG
GCGCTACTACCACTTGCGACATCATCAGTATGCCGGGCAGGTGGTTGACG
TGGAGGAACGTTTAATCGGACTGGGCTTGCCCTGGAACTCGTTTAAACGG
CTCTTGGTGACGTTCACACCCGCCGCGACCCTCCTGATCGCCGATGACAT
TGTGAAAGACGACCCGGACTTCAGCAAACAGGTTCTCGTCCGGTACAACT
CGCCTGTTATCGCCTTTTCGACTGTGGCGATGGTAATCCACCTGTGCCAC
TGCCTCGGGGTAGGGGAGCTTCTGGTAGCGGCCGGCATCCTCCCCGTGGG
GTTTCACGAGGCTTTGCTTCGCTACCTCCTTCCCTTCCTCGTGCTGTATA
ATTCAACGGTGAATCTCCCGAATGTGTTGAGGCAGAGTAGCCTGGTGATC
ATATCGACGTACTGCCACTATTACGGGGACATCCCTGAGCGAGACGTTTT
TTTCCAAACGCAGATTTTGAACCATCCGTTGTTGTGGCCGTTCCAGATGT
TTTGTTTTAATTTTGGAGCTACGCACATCATCCACCATTTTGTGACGCGG
CAGCCGTTTTATCTGCGGCAGCTGACGGCGTTTCGGGTGACACCGGTGAT
GCTTGAGCAAGGATGTCGTCACAACGACCTTGGGAATCATTTCAGGGCAA
ATCGATGGGGTAGGAAGGGGGAGGAGCCCTCGGTGATGATGCCGGTTGGG
GAGGAGAAGAAGGTGCTTTGAGGTAAAATCGGAGGAATCGGAGAGGGGGA
GTGAGAGGAAAAAGGAAAAAGGTTTTCGCGTAAGATGATTTTTTCTGTCC
CCCAAAAAAAGCATGATTGAGTTGGTGAAGCGGGAAGGAAACAGAAGGAA
AGTAATTGTCCCAATTTTTCATTGACGATGTTTCTCTGTGACGGGTGTCC
AGTATCTCGTTTGTGGTTTCGCTTCTGGTGGTGGTGTGGTGTGGTGTGGT
GGAGGGAGAAACAAAACATGCGTGTGTGGACTGTATCATAGTAGTAGTAT
ATATATACCCTCTCTCTAGGTTGACACTTCGCTGTAAAACGTCAACCAAC
GCGCACCGTGCGGGATCTGTGGTTGAGGATGTGGGCAGTTGACGACGGTG
GGTGGGTGGAGGACTGACATGGGAGATGAAGAGAAAAACGAAGTAGAGGA
GGAGGATTAAGATTGAGAAGAATAGCGACAAAATCAACATCTAGGATTGG
TTAGAAGTTCAAACGAGGAGGAAGAAGGCAGGGAAGAGGGTTGGGCCATG
CTGAGAGGGGGAAGGGCCGCAACCTAGAGGTGCAAGGCCCTAGAAGACAT
GGAGCACTGTTAAAACAAGATCAAGAAAAATAAGGATTAGTTGAAGAGCA
AGCAGGAAACCATCATGAGGAAACAACGAATGCGTTTT
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protein sequence of NO02G05420.1

>NO02G05420.1-protein ID=NO02G05420.1-protein|Name=NO02G05420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MPPQNVHMLSRDTLPSSSSLVDEDGSPRYPGTSTHGGASSFSSPSTTATA
TGTMPRTTSISHLSQEATKVKIIRDAIRAEDKRLRSQYFLLREEWQDTVG
AAIFLTAACTWALLSYAWYIGALSTPFLIIGNALAISLLHEMEHDLIHDL
YFKKNKAVQNAMFAFIWVIKSNANPWWRRYYHLRHHQYAGQVVDVEERLI
GLGLPWNSFKRLLVTFTPAATLLIADDIVKDDPDFSKQVLVRYNSPVIAF
STVAMVIHLCHCLGVGELLVAAGILPVGFHEALLRYLLPFLVLYNSTVNL
PNVLRQSSLVIISTYCHYYGDIPERDVFFQTQILNHPLLWPFQMFCFNFG
ATHIIHHFVTRQPFYLRQLTAFRVTPVMLEQGCRHNDLGNHFRANRWGRK
GEEPSVMMPVGEEKKVL*
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mRNA from alignment at chr2:1443893..1447206+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05420.1 ID=NO02G05420.1|Name=NO02G05420.1|organism=Nannochloropsis oceanica|type=mRNA|length=3314bp|location=Sequence derived from alignment at chr2:1443893..1447206+ (Nannochloropsis oceanica)
ATGGCGGTCCAATAAAAAATTACACAATGCCCTTGTGTTGCTTCTACAGT
AATAGCGTCCATGAATAACTGCAGGGCAGGGTCAGTGGTATATGGTGGAC
GAAGTGGCTCTTAATCAGAGATGGAATGCCGGGTCAGGTTATGATGTCCG
GAGGTGCTTTCTGATGGGGTGTGGAGGCAGGGGGGGACAGAAGAGTTCAT
ATTCCCCACGTTTCTTTGCTTTGCATGCTCGGAACTTTCTTTATATTTAA
ACAAGATGCACAGATGATTTCGAGCTGTCAATGGCGTCTCGGAAAATGTG
CACAGCGGTCACTCACGGATGTGCTAAGAGGATCATATGGGCCGGTCGGT
CCCAGAGGAAAGTCTCTCGAGCGCGACGAACGCTCGAGCTAAGAGATCCA
CATCAGCCAATGCGCTCAAATAGCGTGGGATTCATGGTACTTGGTCCCGC
GAGCATCTTTGTGCATGTTTGGCACGATATTGGGTGTGGTTGATGTGCGT
TTCAAGCGAGCTTGAGCCCCTTCGTCTCTGCCCATGTCTGTTGCCTCGTC
ACCTCCTCGACGAAAGCAGAGAGCAAATGCTGCGTCACCCCCAGGTGTAT
TGCCGGCCCCCCTTCCTCTTTCTTTTTTACAAGCGCCCGCGCTCCTTCCT
GCTTCTTGATGTTGGTACCTGGCATTATTGCGTGCACTTTCGATGTGTCT
CTCCTTTTATCATCATTCTCTCTTCCGGCATTCACGCACACAATATGACA
GCCTCGTCACATCGCGATCGCCCAAGGAGTCCGCCGACCGTCGCGGTGCC
AGCAGCAAGAACACTGCGCAGATCCGTCACCACGTGCATAGACTACAGCT
AAGAAACCACCATCACCATGCCGCCTCAAAATGTGCACATGCTCAGCCGG
GACACCCTTCCGTCCTCAAGCTCCCTCGTCGGTACGTGTGACAATTTCTT
ATCTACCGCTGCCTTCCAGAGCTCGTGCGAAGAAAACCTGCGTCGCATGC
CGCAACCAGAGTTTGTCGGGCATCGTGTCCTATGCCTTGATCCCGGCAGG
GATATAACCCCTTTGTCATTCCTGTGTCCCTGTGTGACCCATCCTTCGCC
CGGCTGTGCTTGTACCACCTGGCTTCATTCTCTTGTGTCCCGTTCTTTCG
ATGTTCCACCTCACGCTTGTGTCCCTCCCACTTCCCCCCTCCTGACAGAT
GAAGACGGCTCCCCCCGCTACCCCGGCACGTCTACCCATGGGGGTGCTTC
CTCCTTCTCCTCCCCCTCCACCACGGCAACTGCCACTGGCACAATGCCGC
GCACCACCTCCATCTCCCACCTCAGCCAAGAGGCCACCAAGGTCAAAATC
ATCCGCGACGCCATCCGGGCGGAAGACAAGCGGCTGCGCTCCCAATATTT
CCTCCTGCGTGAGGAGTGGCAAGACACAGTCGGTGCGGCTATCTTCCTGA
CGGCCGCCTGTACATGGGCCTTGCTCTCCTACGCGTGGTACATCGGCGCC
CTTTCCACCCCTTTCCTCATCATAGGCAATGCCCTGGCCATCTCGCTGTT
GCATGAGATGGAGCACGACTTAATCCACGACTTGTATTTCAAGAAGAACA
AGGCCGTTCAAAATGCCATGTTCGCATTTATCTGGGTGATCAAGAGGTAC
GTCTTCACGACTATTCTTCCTCCCTCTCTCCAATCCACCTCGCTGCTGCT
GGTCCCTCCCTTGCGCGTGCCAGTGGCTGCACGTGATGGAAGACATATTG
AATCCCTCTTCTCCCTCCATCTCATCTTCACTCCATGACAAGAGAAACGG
TGATAGTCATCGCGCCAGCAGTTTCACTGGACCCTCCCCCTTCTCCCTCC
CTCCCCCTCTTCTCTCTCTCCCCCCTCCCTCCCTCCCTCACTACCCGTCC
TCCAGCAACGCCAACCCCTGGTGGCGGCGCTACTACCACTTGCGACATCA
TCAGTATGCCGGGCAGGTGGTTGACGTGGAGGAACGTTTAATCGGACTGG
GCTTGCCCTGGAACTCGTTTAAACGGCTCTTGGTGACGTTCACACCCGCC
GCGACCCTCCTGATCGCCGATGACATTGTGAAAGACGACCCGGACTTCAG
CAAACAGGTTCTCGTCCGGTACAACTCGCCTGTTATCGCCTTTTCGACTG
TGGCGATGGTAATCCACCTGTGCCACTGCCTCGGGGTAGGGGAGCTTCTG
GTAGCGGCCGGCATCCTCCCCGTGGGGTTTCACGAGGCTTTGCTTCGCTA
CCTCCTTCCCTTCCTCGTGCTGTATAATTCAACGGTGAATCTCCCGAATG
TGTTGAGGCAGAGTAGCCTGGTGATCATATCGACGTACTGCCACTATTAC
GGGGACATCCCTGAGCGAGACGTTTTTTTCCAAACGCAGATTTTGAACCA
TCCGTTGTTGTGGCCGTTCCAGATGTTTTGTTTTAATTTTGGAGCTACGC
ACATCATCCACCATTTTGTGACGCGGCAGCCGTTTTATCTGCGGCAGCTG
ACGGCGTTTCGGGTGACACCGGTGATGCTTGAGCAAGGATGTCGTCACAA
CGACCTTGGGAATCATTTCAGGGCAAATCGATGGGGTAGGAAGGGGGAGG
AGCCCTCGGTGATGATGCCGGTTGGGGAGGAGAAGAAGGTGCTTTGAGGT
AAAATCGGAGGAATCGGAGAGGGGGAGTGAGAGGAAAAAGGAAAAAGGTT
TTCGCGTAAGATGATTTTTTCTGTCCCCCAAAAAAAGCATGATTGAGTTG
GTGAAGCGGGAAGGAAACAGAAGGAAAGTAATTGTCCCAATTTTTCATTG
ACGATGTTTCTCTGTGACGGGTGTCCAGTATCTCGTTTGTGGTTTCGCTT
CTGGTGGTGGTGTGGTGTGGTGTGGTGGAGGGAGAAACAAAACATGCGTG
TGTGGACTGTATCATAGTAGTAGTATATATATACCCTCTCTCTAGGTTGA
CACTTCGCTGTAAAACGTCAACCAACGCGCACCGTGCGGGATCTGTGGTT
GAGGATGTGGGCAGTTGACGACGGTGGGTGGGTGGAGGACTGACATGGGA
GATGAAGAGAAAAACGAAGTAGAGGAGGAGGATTAAGATTGAGAAGAATA
GCGACAAAATCAACATCTAGGATTGGTTAGAAGTTCAAACGAGGAGGAAG
AAGGCAGGGAAGAGGGTTGGGCCATGCTGAGAGGGGGAAGGGCCGCAACC
TAGAGGTGCAAGGCCCTAGAAGACATGGAGCACTGTTAAAACAAGATCAA
GAAAAATAAGGATTAGTTGAAGAGCAAGCAGGAAACCATCATGAGGAAAC
AACGAATGCGTTTT
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Coding sequence (CDS) from alignment at chr2:1443893..1447206+

>NO02G05420.1 ID=NO02G05420.1|Name=NO02G05420.1|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at chr2:1443893..1447206+ (Nannochloropsis oceanica)
ATGCCGCCTCAAAATGTGCACATGCTCAGCCGGGACACCCTTCCGTCCTC
AAGCTCCCTCGTCGATGAAGACGGCTCCCCCCGCTACCCCGGCACGTCTA
CCCATGGGGGTGCTTCCTCCTTCTCCTCCCCCTCCACCACGGCAACTGCC
ACTGGCACAATGCCGCGCACCACCTCCATCTCCCACCTCAGCCAAGAGGC
CACCAAGGTCAAAATCATCCGCGACGCCATCCGGGCGGAAGACAAGCGGC
TGCGCTCCCAATATTTCCTCCTGCGTGAGGAGTGGCAAGACACAGTCGGT
GCGGCTATCTTCCTGACGGCCGCCTGTACATGGGCCTTGCTCTCCTACGC
GTGGTACATCGGCGCCCTTTCCACCCCTTTCCTCATCATAGGCAATGCCC
TGGCCATCTCGCTGTTGCATGAGATGGAGCACGACTTAATCCACGACTTG
TATTTCAAGAAGAACAAGGCCGTTCAAAATGCCATGTTCGCATTTATCTG
GGTGATCAAGAGCAACGCCAACCCCTGGTGGCGGCGCTACTACCACTTGC
GACATCATCAGTATGCCGGGCAGGTGGTTGACGTGGAGGAACGTTTAATC
GGACTGGGCTTGCCCTGGAACTCGTTTAAACGGCTCTTGGTGACGTTCAC
ACCCGCCGCGACCCTCCTGATCGCCGATGACATTGTGAAAGACGACCCGG
ACTTCAGCAAACAGGTTCTCGTCCGGTACAACTCGCCTGTTATCGCCTTT
TCGACTGTGGCGATGGTAATCCACCTGTGCCACTGCCTCGGGGTAGGGGA
GCTTCTGGTAGCGGCCGGCATCCTCCCCGTGGGGTTTCACGAGGCTTTGC
TTCGCTACCTCCTTCCCTTCCTCGTGCTGTATAATTCAACGGTGAATCTC
CCGAATGTGTTGAGGCAGAGTAGCCTGGTGATCATATCGACGTACTGCCA
CTATTACGGGGACATCCCTGAGCGAGACGTTTTTTTCCAAACGCAGATTT
TGAACCATCCGTTGTTGTGGCCGTTCCAGATGTTTTGTTTTAATTTTGGA
GCTACGCACATCATCCACCATTTTGTGACGCGGCAGCCGTTTTATCTGCG
GCAGCTGACGGCGTTTCGGGTGACACCGGTGATGCTTGAGCAAGGATGTC
GTCACAACGACCTTGGGAATCATTTCAGGGCAAATCGATGGGGTAGGAAG
GGGGAGGAGCCCTCGGTGATGATGCCGGTTGGGGAGGAGAAGAAGGTGCT
TTGA
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Synonyms
Publications