NO02G05250.1, NO02G05250.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G05250.1
Unique Name	NO02G05250.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1071
Alignment location	chr2:1402869..1403939 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:1402869..1403939 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO02G05250.1 vs.

BLAST of NO02G05250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G05250	NO02G05250	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G05250.1	NO02G05250.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G05250.1.cds1	NO02G05250.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:1402869..1403939-
coding sequence from alignment at chr2:1402869..1403939-

mRNA sequence

>NO02G05250.1 ID=NO02G05250.1|Name=NO02G05250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1071bp
ATGGGGGGGGGGGAGTGGGTCAGGTATGAGAGGCCGCAGAGGCAGAGGAA
GAAGAGGAGGTGGGGGGATGAGGATAGTGAGGAGGAGCAGGAGATAGTGG
TGGAGGAGGACGAGGAGGAGGAGGAGGAGAGTGAGGAGGAGAGCTTGCGG
ATTTCGACGGCGAGTGAAGATGAACTTGATGATGATGATGATGATATGGA
GGAGGAGGAGGAGGAGAGAAAGAGGGGGGAAGGGGAAGAAGGTAAAGGAG
GAGAAAGTGGGGAGGTAGTGACGACGACGGCAGTGGAGGGAGGGAGGGAG
GTGGAGGTTGAGAAGAAGACTACTGAAGAATTGAAGGCGAAGGAGGAGGA
AAAAGAGCCAGCGCAGGAGCAGCCACAAGGTCAAGAAGACGGAAGACGAG
GTGGAGGAGGACGAGAAGGAGGGACAGGCAAGAAAGGAAGCGAGCAGCCG
TCGGTCTCGGTCCCAGCAGCCATGGATTTAGACAAGCAGGAGCGGGTTAT
CGAAGCATTGCCAGCAGCAGCGTCAACAGCAACAGCAGTAGCAGCAGCCG
CACTACCATTACCATCAGCAGCAGCAGTAGCAGCGGCAACAACAAAAATA
TCATTACCACCAGCAGCAGCAGTAGCAGGAGCAGTAGGAGGCAGAGGAAA
CCCAGCAAGAGAAGCTGCAGGACCACCACCTCCCCGATCTGAAGGAGCCG
GCGAGGCCTCGGCGGCCCATACTCAGGCAACAGAGGAAGACGGGGAAAAA
GAGGGGGAAGCTACTGTCGTTGCGGGGGAGGGAGGGGCGGCCGGGGAAGA
GGGAGAGGAGAAGAGAGGGGAGGTATTGCCATCTACGGGACCAGAAATGG
AGAGGGAGGTTAGAGGGGAGGTAGTGGTGGAGAGTATGACTTTTTGAGAA
AAAGGAGGAGAAGCGTGTGGCATGGTAAGGTAGCAGCAGCAGCGGCAATT
TGAGCAGCAGTAGCAGTTTGAGTAGCAGCTGCCGCACCACCAACACCAAC
AGGGGCAAAATCAATAGAGACAACCTAAAAATGAATAATGGGCGCAACAG
AAAACGGCAATACCAACTCCA

protein sequence of NO02G05250.1

>NO02G05250.1-protein ID=NO02G05250.1-protein|Name=NO02G05250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MGGGEWVRYERPQRQRKKRRWGDEDSEEEQEIVVEEDEEEEEESEEESLR
ISTASEDELDDDDDDMEEEEEERKRGEGEEGKGGESGEVVTTTAVEGGRE
VEVEKKTTEELKAKEEEKEPAQEQPQGQEDGRRGGGGREGGTGKKGSEQP
SVSVPAAMDLDKQERVIEALPAAASTATAVAAAALPLPSAAAVAAATTKI
SLPPAAAVAGAVGGRGNPAREAAGPPPPRSEGAGEASAAHTQATEEDGEK
EGEATVVAGEGGAAGEEGEEKRGEVLPSTGPEMEREVRGEVVVESMTF*

mRNA from alignment at chr2:1402869..1403939-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G05250.1 ID=NO02G05250.1|Name=NO02G05250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1071bp|location=Sequence derived from alignment at chr2:1402869..1403939- (Nannochloropsis oceanica)
ATGGGGGGGGGGGAGTGGGTCAGGTATGAGAGGCCGCAGAGGCAGAGGAA
GAAGAGGAGGTGGGGGGATGAGGATAGTGAGGAGGAGCAGGAGATAGTGG
TGGAGGAGGACGAGGAGGAGGAGGAGGAGAGTGAGGAGGAGAGCTTGCGG
ATTTCGACGGCGAGTGAAGATGAACTTGATGATGATGATGATGATATGGA
GGAGGAGGAGGAGGAGAGAAAGAGGGGGGAAGGGGAAGAAGGTAAAGGAG
GAGAAAGTGGGGAGGTAGTGACGACGACGGCAGTGGAGGGAGGGAGGGAG
GTGGAGGTTGAGAAGAAGACTACTGAAGAATTGAAGGCGAAGGAGGAGGA
AAAAGAGCCAGCGCAGGAGCAGCCACAAGGTCAAGAAGACGGAAGACGAG
GTGGAGGAGGACGAGAAGGAGGGACAGGCAAGAAAGGAAGCGAGCAGCCG
TCGGTCTCGGTCCCAGCAGCCATGGATTTAGACAAGCAGGAGCGGGTTAT
CGAAGCATTGCCAGCAGCAGCGTCAACAGCAACAGCAGTAGCAGCAGCCG
CACTACCATTACCATCAGCAGCAGCAGTAGCAGCGGCAACAACAAAAATA
TCATTACCACCAGCAGCAGCAGTAGCAGGAGCAGTAGGAGGCAGAGGAAA
CCCAGCAAGAGAAGCTGCAGGACCACCACCTCCCCGATCTGAAGGAGCCG
GCGAGGCCTCGGCGGCCCATACTCAGGCAACAGAGGAAGACGGGGAAAAA
GAGGGGGAAGCTACTGTCGTTGCGGGGGAGGGAGGGGCGGCCGGGGAAGA
GGGAGAGGAGAAGAGAGGGGAGGTATTGCCATCTACGGGACCAGAAATGG
AGAGGGAGGTTAGAGGGGAGGTAGTGGTGGAGAGTATGACTTTTTGAGAA
AAAGGAGGAGAAGCGTGTGGCATGGTAAGGTAGCAGCAGCAGCGGCAATT
TGAGCAGCAGTAGCAGTTTGAGTAGCAGCTGCCGCACCACCAACACCAAC
AGGGGCAAAATCAATAGAGACAACCTAAAAATGAATAATGGGCGCAACAG
AAAACGGCAATACCAACTCCA

Coding sequence (CDS) from alignment at chr2:1402869..1403939-

>NO02G05250.1 ID=NO02G05250.1|Name=NO02G05250.1|organism=Nannochloropsis oceanica|type=CDS|length=897bp|location=Sequence derived from alignment at chr2:1402869..1403939- (Nannochloropsis oceanica)
ATGGGGGGGGGGGAGTGGGTCAGGTATGAGAGGCCGCAGAGGCAGAGGAA
GAAGAGGAGGTGGGGGGATGAGGATAGTGAGGAGGAGCAGGAGATAGTGG
TGGAGGAGGACGAGGAGGAGGAGGAGGAGAGTGAGGAGGAGAGCTTGCGG
ATTTCGACGGCGAGTGAAGATGAACTTGATGATGATGATGATGATATGGA
GGAGGAGGAGGAGGAGAGAAAGAGGGGGGAAGGGGAAGAAGGTAAAGGAG
GAGAAAGTGGGGAGGTAGTGACGACGACGGCAGTGGAGGGAGGGAGGGAG
GTGGAGGTTGAGAAGAAGACTACTGAAGAATTGAAGGCGAAGGAGGAGGA
AAAAGAGCCAGCGCAGGAGCAGCCACAAGGTCAAGAAGACGGAAGACGAG
GTGGAGGAGGACGAGAAGGAGGGACAGGCAAGAAAGGAAGCGAGCAGCCG
TCGGTCTCGGTCCCAGCAGCCATGGATTTAGACAAGCAGGAGCGGGTTAT
CGAAGCATTGCCAGCAGCAGCGTCAACAGCAACAGCAGTAGCAGCAGCCG
CACTACCATTACCATCAGCAGCAGCAGTAGCAGCGGCAACAACAAAAATA
TCATTACCACCAGCAGCAGCAGTAGCAGGAGCAGTAGGAGGCAGAGGAAA
CCCAGCAAGAGAAGCTGCAGGACCACCACCTCCCCGATCTGAAGGAGCCG
GCGAGGCCTCGGCGGCCCATACTCAGGCAACAGAGGAAGACGGGGAAAAA
GAGGGGGAAGCTACTGTCGTTGCGGGGGAGGGAGGGGCGGCCGGGGAAGA
GGGAGAGGAGAAGAGAGGGGAGGTATTGCCATCTACGGGACCAGAAATGG
AGAGGGAGGTTAGAGGGGAGGTAGTGGTGGAGAGTATGACTTTTTGA

Synonyms

Publications