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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:1345230..1347287 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G05020.1 vs.
Match: EWM30166.1 (serine threonine protein phosphatase [Nannochloropsis gaditana]) HSP 1 Score: 889.4 bits (2297), Expect = 5.700e-255 Identity = 447/561 (79.68%), Postives = 494/561 (88.06%), Query Frame = 0
Query: 1 MSFLSNSPRGKKALEGKADAFGGSVCDSQSYKMDLLITQLRESVRDKDAIISSMQAEAESLRASLAQMRAQEASRSPRNRKVVPLSYEVEADGVLSRTRVGRHASVATTQILNTFPVESTDELASKMIDMFRKPLDKIDYLHSSRFAHDLMKLCARAKPIFEAEPRCLALESPTYVIGDIHGNLEDLNFFADHLWKLGTQLTAGKFLFLGDYVDRGTNGLECVAYLFASKICSPTKLFMLRGNHETRDVNGWEDHYGDRSFLRQCKARFGRDLGEQIWEAINQVFDRLPLAGVIDNDIFCVHGGLPRPTKEVEVATRVEDLLAVPRVAGISPVYDHESRVSQQLASDCIWSDPALADMEQGRELNDLGFGESLRGGGAVCFGNRAVDNFLDVNQFSYIVRAHEAHAEGVGLSKGARVFTVFSTSKDHGQGTGAVAGCILVDNDAIRVINRSAKYKNKFVHRRQSATAAGVAPAHVEKAIRLGLVLNVPHEPLDRVV--PRMGLQQQQQVTMTTVSSSVRGS-LADAAATFAALALQREHSHSFSSEEGVLGEEGEDDDDME 559
MSFLS+SPR +KALE + G ++ D QSYKM++L+ QL ES++DKD +I+ MQAE +SLR SL+QMR QE RSPRNRKVV LSY+VEADGVLSR RV R ASVAT Q L+ FPVESTDELASKMID+FRKPLDKIDYLHSSRFAHDL++LC R KPIFEAE RCL LESP+YV GDIHGNLEDLNFFADHLW+LGTQLTAG+FLFLGDYVDRG NGLECVAYLFA KI SPTKLFMLRGNHETRDVNGWEDHYGDRSFLRQC+ARFGR+LGEQ+WE++NQVFDRLPLAGVIDNDIFCVHGGLPRP+K EVA+RVEDLLAVPRVAGISPVY++ESRV QQL+SDCIWSDPAL+DME GRELN+LGFGESLRGGGAVCFGNRAVDNFL VN+FSYIVRAHEAHAEGVGLSKGARVFTVFSTSKDHGQG GAVAGCILVD+DAIRVINRSAKYKNKFVHRRQSATAAGVAPAHVEKAIRLGLVLNVPHEPLDRV+ P++ ++T S+ G + DA AT AAL L R+ SHSFS+++ GEE EDDDD E
Sbjct: 1 MSFLSSSPRARKALEAIPTSPGSTLQDLQSYKMEILVKQLTESIKDKDNVINDMQAEIKSLRDSLSQMRTQEGIRSPRNRKVVALSYQVEADGVLSRARVARQASVATAQALSAFPVESTDELASKMIDVFRKPLDKIDYLHSSRFAHDLIQLCERVKPIFEAEDRCLFLESPSYVFGDIHGNLEDLNFFADHLWRLGTQLTAGRFLFLGDYVDRGMNGLECVAYLFALKIISPTKLFMLRGNHETRDVNGWEDHYGDRSFLRQCRARFGRELGEQVWESVNQVFDRLPLAGVIDNDIFCVHGGLPRPSKMHEVASRVEDLLAVPRVAGISPVYEYESRVLQQLSSDCIWSDPALSDMEHGRELNELGFGESLRGGGAVCFGNRAVDNFLAVNEFSYIVRAHEAHAEGVGLSKGARVFTVFSTSKDHGQGNGAVAGCILVDHDAIRVINRSAKYKNKFVHRRQSATAAGVAPAHVEKAIRLGLVLNVPHEPLDRVLPPPKIVTTTNTATNVSTYSNGAPGERVTDATATLAALGLHRDRSHSFSTDDCGSGEEEEDDDDDE 561
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G05020.1 ID=NO02G05020.1|Name=NO02G05020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp
ATGTCGTTCCTCAGTAATTCCCCGCGTGGAAAGAAAGCCCTTGAAGGCAA
AGCGGACGCCTTTGGAGGCAGTGTTTGCGACTCCCAAAGCTACAAAATGG
ATCTCCTCATCACGCAACTCAGGGAGTCTGTCCGCGACAAAGATGCCATC
ATCAGCTCCATGCAAGCAGAAGCTGAGTCTTTGCGTGCCTCCCTCGCACA
AATGCGCGCCCAAGAAGCTTCAAGGTCCCCCCGCAACCGCAAAGTCGTCC
CTCTTTCCTATGAAGTCGAAGCAGACGGCGTCCTTTCTCGCACACGCGTC
GGGCGCCACGCTTCCGTTGCGACTACACAAATCTTAAATACCTTCCCGGT
GGAGAGCACGGACGAGCTGGCTAGCAAGATGATCGACATGTTCCGCAAAC
CCCTGGACAAGATCGATTACCTCCACTCCTCCCGCTTCGCTCACGATTTG
ATGAAGCTCTGTGCACGGGCAAAGCCTATTTTTGAGGCCGAGCCCCGGTG
CTTGGCGTTGGAGAGTCCTACCTATGTGATTGGTGATATTCACGGGAATT
TGGAAGACTTGAACTTTTTTGCGGATCATCTATGGAAGCTCGGGACGCAG
CTGACGGCCGGCAAGTTTTTGTTCTTGGGAGATTATGTAGATAGGGGGAC
GAACGGGTTGGAGTGTGTGGCGTACCTATTTGCGTCGAAGATCTGCTCAC
CGACCAAGCTGTTTATGCTGCGGGGAAATCACGAAACGCGGGATGTGAAT
GGTTGGGAGGATCATTACGGGGATCGGTCGTTCCTGAGGCAGTGCAAGGC
CCGCTTTGGACGTGACTTGGGAGAGCAGATCTGGGAGGCGATAAATCAGG
TGTTTGATCGGCTGCCTTTGGCGGGAGTGATTGACAATGACATCTTTTGC
GTGCATGGCGGTCTGCCGAGGCCGACCAAGGAGGTTGAAGTCGCGACGCG
GGTGGAGGACTTGCTGGCTGTGCCACGTGTAGCGGGCATTTCGCCGGTGT
ACGACCATGAGTCACGAGTGTCTCAACAATTGGCTTCCGACTGCATCTGG
TCGGACCCGGCCTTGGCGGACATGGAGCAGGGCAGGGAACTGAACGACTT
GGGGTTTGGAGAGAGCCTGAGGGGGGGAGGAGCGGTGTGTTTTGGGAATC
GTGCGGTTGATAATTTTCTGGACGTGAACCAGTTCTCGTACATCGTTCGC
GCGCACGAGGCACATGCGGAGGGAGTGGGGCTGAGTAAGGGGGCGCGGGT
GTTCACGGTATTTTCAACGAGCAAGGACCATGGGCAGGGGACGGGCGCGG
TGGCTGGATGTATATTGGTGGACAATGATGCCATTCGCGTCATCAACCGC
TCGGCTAAGTACAAGAACAAGTTTGTGCACCGAAGACAGAGTGCAACAGC
CGCGGGGGTTGCCCCGGCTCATGTGGAGAAGGCCATCCGGTTGGGCTTGG
TGTTAAACGTGCCCCATGAGCCCTTGGATAGGGTGGTGCCCCGGATGGGC
CTGCAGCAGCAGCAGCAGGTGACAATGACAACGGTTAGCAGCAGTGTGCG
GGGGTCACTGGCGGATGCGGCGGCAACGTTTGCGGCTCTGGCGCTGCAGC
GGGAGCACAGTCATTCGTTTTCGAGTGAGGAGGGAGTATTGGGGGAGGAA
GGGGAAGATGACGATGATATGGAAAGTGGGAAGCCTTAG back to topprotein sequence of NO02G05020.1 >NO02G05020.1-protein ID=NO02G05020.1-protein|Name=NO02G05020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=563bp
MSFLSNSPRGKKALEGKADAFGGSVCDSQSYKMDLLITQLRESVRDKDAI
ISSMQAEAESLRASLAQMRAQEASRSPRNRKVVPLSYEVEADGVLSRTRV
GRHASVATTQILNTFPVESTDELASKMIDMFRKPLDKIDYLHSSRFAHDL
MKLCARAKPIFEAEPRCLALESPTYVIGDIHGNLEDLNFFADHLWKLGTQ
LTAGKFLFLGDYVDRGTNGLECVAYLFASKICSPTKLFMLRGNHETRDVN
GWEDHYGDRSFLRQCKARFGRDLGEQIWEAINQVFDRLPLAGVIDNDIFC
VHGGLPRPTKEVEVATRVEDLLAVPRVAGISPVYDHESRVSQQLASDCIW
SDPALADMEQGRELNDLGFGESLRGGGAVCFGNRAVDNFLDVNQFSYIVR
AHEAHAEGVGLSKGARVFTVFSTSKDHGQGTGAVAGCILVDNDAIRVINR
SAKYKNKFVHRRQSATAAGVAPAHVEKAIRLGLVLNVPHEPLDRVVPRMG
LQQQQQVTMTTVSSSVRGSLADAAATFAALALQREHSHSFSSEEGVLGEE
GEDDDDMESGKP* back to topmRNA from alignment at chr2:1345230..1347287- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G05020.1 ID=NO02G05020.1|Name=NO02G05020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2058bp|location=Sequence derived from alignment at chr2:1345230..1347287- (Nannochloropsis oceanica)
ATGTCGTTCCTCAGTAATTCCCCGCGTGGAAAGAAAGCCCTTGAAGGCAA
AGCGGACGCCTTTGGAGGCAGTGTTTGCGACTCCCAAAGGTAATTAGAAA
GTGAAGATGAACAACACCTGGATGTGATTAGGGTGTATGTCCTTAGATGT
CTGCCTCTACCATGCATGCGCGTGTACCTAGGCTGGCAAGTCATTCCCTC
CACATGATGTTTTGAATGGCCGAGCCAAACGGCAAATGACCGCGCTAACA
ATCTTAGTATGTGGCTTCTGCTGTTAAGCCCTTAGGTGGAATGCCACACT
CTCCTCATTCTCTGCCCAAGCTTCTCTGCCTCGCCACACTCTCCTCATTC
TCTGCCCAAGCTTCTCTGCCTCCTCTCCTCTCGCTTTGCATCCCTCCTAC
ATCTCATGAAACACCTTTACCCTGTCTCATTACACTTCCATTTCCACTCT
TACCATAGCTACAAAATGGATCTCCTCATCACGCAACTCAGGGAGTCTGT
CCGCGACAAAGATGCCATCATCAGCTCCATGCAAGCAGAAGCTGAGTCTT
TGCGTGCCTCCCTCGCACAAATGCGCGCCCAAGAAGCTTCAAGGTCCCCC
CGCAACCGCAAAGTCGTCCCTCTTTCCTATGAAGTCGAAGCAGACGGCGT
CCTTTCTCGCACACGCGTCGGGCGCCACGCTTCCGTTGCGACTACACAAA
TCTTAAATACCTTCCCGGTGGAGAGCACGGACGAGCTGGCTAGCAAGATG
ATCGACATGTTCCGCAAACCCCTGGACAAGATCGATTACCTCCACTCCTC
CCGCTTCGCTCACGATTTGATGAAGCTCTGTGCACGGGCAAAGCCTATTT
TTGAGGCCGAGCCCCGGTGCTTGGCGTTGGAGAGTCCTACCTATGTGATT
GGTGATATTCACGGGAATTTGGAAGACTTGAACTTTTTTGCGGATCATCT
ATGGAAGCTCGGGACGCAGCTGACGGCCGGCAAGTTTTTGTTCTTGGGAG
ATTATGTAGATAGGGGGACGAACGGGTTGGAGTGTGTGGCGTACCTATTT
GCGTCGAAGATCTGCTCACCGACCAAGCTGTTTATGCTGCGGGGAAATCA
CGAAACGCGGGATGTGAATGGTTGGGAGGATCATTACGGGGATCGGTCGT
TCCTGAGGCAGTGCAAGGCCCGCTTTGGACGTGACTTGGGAGAGCAGATC
TGGGAGGCGATAAATCAGGTGTTTGATCGGCTGCCTTTGGCGGGAGTGAT
TGACAATGACATCTTTTGCGTGCATGGCGGTCTGCCGAGGCCGACCAAGG
AGGTTGAAGTCGCGACGCGGGTGGAGGACTTGCTGGCTGTGCCACGTGTA
GCGGGCATTTCGCCGGTGTACGACCATGAGTCACGAGTGTCTCAACAATT
GGCTTCCGACTGCATCTGGTCGGACCCGGCCTTGGCGGACATGGAGCAGG
GCAGGGAACTGAACGACTTGGGGTTTGGAGAGAGCCTGAGGGGGGGAGGA
GCGGTGTGTTTTGGGAATCGTGCGGTTGATAATTTTCTGGACGTGAACCA
GTTCTCGTACATCGTTCGCGCGCACGAGGCACATGCGGAGGGAGTGGGGC
TGAGTAAGGGGGCGCGGGTGTTCACGGTATTTTCAACGAGCAAGGACCAT
GGGCAGGGGACGGGCGCGGTGGCTGGATGTATATTGGTGGACAATGATGC
CATTCGCGTCATCAACCGCTCGGCTAAGTACAAGAACAAGTTTGTGCACC
GAAGACAGAGTGCAACAGCCGCGGGGGTTGCCCCGGCTCATGTGGAGAAG
GCCATCCGGTTGGGCTTGGTGTTAAACGTGCCCCATGAGCCCTTGGATAG
GGTGGTGCCCCGGATGGGCCTGCAGCAGCAGCAGCAGGTGACAATGACAA
CGGTTAGCAGCAGTGTGCGGGGGTCACTGGCGGATGCGGCGGCAACGTTT
GCGGCTCTGGCGCTGCAGCGGGAGCACAGTCATTCGTTTTCGAGTGAGGA
GGGAGTATTGGGGGAGGAAGGGGAAGATGACGATGATATGGAAAGTGGGA
AGCCTTAG back to topCoding sequence (CDS) from alignment at chr2:1345230..1347287- >NO02G05020.1 ID=NO02G05020.1|Name=NO02G05020.1|organism=Nannochloropsis oceanica|type=CDS|length=1689bp|location=Sequence derived from alignment at chr2:1345230..1347287- (Nannochloropsis oceanica)
ATGTCGTTCCTCAGTAATTCCCCGCGTGGAAAGAAAGCCCTTGAAGGCAA
AGCGGACGCCTTTGGAGGCAGTGTTTGCGACTCCCAAAGCTACAAAATGG
ATCTCCTCATCACGCAACTCAGGGAGTCTGTCCGCGACAAAGATGCCATC
ATCAGCTCCATGCAAGCAGAAGCTGAGTCTTTGCGTGCCTCCCTCGCACA
AATGCGCGCCCAAGAAGCTTCAAGGTCCCCCCGCAACCGCAAAGTCGTCC
CTCTTTCCTATGAAGTCGAAGCAGACGGCGTCCTTTCTCGCACACGCGTC
GGGCGCCACGCTTCCGTTGCGACTACACAAATCTTAAATACCTTCCCGGT
GGAGAGCACGGACGAGCTGGCTAGCAAGATGATCGACATGTTCCGCAAAC
CCCTGGACAAGATCGATTACCTCCACTCCTCCCGCTTCGCTCACGATTTG
ATGAAGCTCTGTGCACGGGCAAAGCCTATTTTTGAGGCCGAGCCCCGGTG
CTTGGCGTTGGAGAGTCCTACCTATGTGATTGGTGATATTCACGGGAATT
TGGAAGACTTGAACTTTTTTGCGGATCATCTATGGAAGCTCGGGACGCAG
CTGACGGCCGGCAAGTTTTTGTTCTTGGGAGATTATGTAGATAGGGGGAC
GAACGGGTTGGAGTGTGTGGCGTACCTATTTGCGTCGAAGATCTGCTCAC
CGACCAAGCTGTTTATGCTGCGGGGAAATCACGAAACGCGGGATGTGAAT
GGTTGGGAGGATCATTACGGGGATCGGTCGTTCCTGAGGCAGTGCAAGGC
CCGCTTTGGACGTGACTTGGGAGAGCAGATCTGGGAGGCGATAAATCAGG
TGTTTGATCGGCTGCCTTTGGCGGGAGTGATTGACAATGACATCTTTTGC
GTGCATGGCGGTCTGCCGAGGCCGACCAAGGAGGTTGAAGTCGCGACGCG
GGTGGAGGACTTGCTGGCTGTGCCACGTGTAGCGGGCATTTCGCCGGTGT
ACGACCATGAGTCACGAGTGTCTCAACAATTGGCTTCCGACTGCATCTGG
TCGGACCCGGCCTTGGCGGACATGGAGCAGGGCAGGGAACTGAACGACTT
GGGGTTTGGAGAGAGCCTGAGGGGGGGAGGAGCGGTGTGTTTTGGGAATC
GTGCGGTTGATAATTTTCTGGACGTGAACCAGTTCTCGTACATCGTTCGC
GCGCACGAGGCACATGCGGAGGGAGTGGGGCTGAGTAAGGGGGCGCGGGT
GTTCACGGTATTTTCAACGAGCAAGGACCATGGGCAGGGGACGGGCGCGG
TGGCTGGATGTATATTGGTGGACAATGATGCCATTCGCGTCATCAACCGC
TCGGCTAAGTACAAGAACAAGTTTGTGCACCGAAGACAGAGTGCAACAGC
CGCGGGGGTTGCCCCGGCTCATGTGGAGAAGGCCATCCGGTTGGGCTTGG
TGTTAAACGTGCCCCATGAGCCCTTGGATAGGGTGGTGCCCCGGATGGGC
CTGCAGCAGCAGCAGCAGGTGACAATGACAACGGTTAGCAGCAGTGTGCG
GGGGTCACTGGCGGATGCGGCGGCAACGTTTGCGGCTCTGGCGCTGCAGC
GGGAGCACAGTCATTCGTTTTCGAGTGAGGAGGGAGTATTGGGGGAGGAA
GGGGAAGATGACGATGATATGGAAAGTGGGAAGCCTTAG back to top
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