NO02G04790.1, NO02G04790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04790.1
Unique NameNO02G04790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2036
Alignment locationchr2:1292775..1294810 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1292775..1294810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04790.1 vs.
Match: XP_005852720.1 (prolyl 4- alpha subunit domain protein, partial [Nannochloropsis gaditana CCMP526]; EKU23112.1 prolyl 4- alpha subunit domain protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 602.4 bits (1552), Expect = 1.600e-168
Identity = 311/611 (50.90%), Postives = 414/611 (67.76%), Query Frame = 0 
Query:   22 VAHAAAALKAVTEVVNDASVGLDVYWRNEAEGGAYSLIMTVARGARSTVNTFQGHGFLVTAQGTAVSPSDRPNFIQQLEKQALRVRGNSREDLAFENLDISKIMSGTKDNTKKRNATGFTSTSSEDEAKAALSGESQVFVRNDAGKTVYVYWLKPVDGLYILVGTMFDGQELSFDSFIGHDMHVSAFSAVEAAKDDQAPNLPVRRSSHTLRVLPSNNDREDVVLHMDQSPDNLKKKKEKKSPAKASIPRKTQPKESSPPPLTKPAARYLKTVTIEQTKQAIHTCQGEATCIVDALYRGKIAKIQNSIQNAMTKRDDMEDRYRDYACLNHITMGPEEIETSYWNYTDEGVEAAMAATTACENDESGMCKDSSSSLSSSSFNGTQKQIRVDHYFDTDKGNAKIYLLHDIVTPTECAELQKRATGRLAPATTTGDIPGEKVVSATRKAKVAMVRPDLDSDAHDILAPLQRRLFAFVNEHGGGGYENFGLAGQEPFNVIMYNASGDEYRPHCDGYCDSSKFARGGRAATVVLYCEEAVRGGQTSFTAADILLKGQAGQAVFFHYRGEDGYMDSGYTKHSGCPLVEGNKWIATQWIRGGVSAAMPWYYFSPTGDQD 633
            + +  AA  A  E++N ASV LDVYWR+E  GG Y+ I T+ +G    + TFQGHGFL+T +G  V P DRPNF+QQ+++  +R   +S+E+L FE+LD+   +   KD   K++     +++S D     L    Q+ + N AG  +Y+YWL P  G +IL+ TM  GQ    +SF+GH + +S           +APN+ V   S    V+ SN+   DV++           KK ++S ++ ++     P E  PPPL KP A Y K+VT +Q K+A+  C GEA+CIVDALYRGK+A+IQ SIQ +MT+RD++++ YRDYACL+H TMGPE+++ +YW Y ++   A                 DS S +S ++ N   K +RVDHYFD++ GNA+IYLLHDI++P+ECA L+ R++GRL  A+ +G++PG++++S+ RKAK A + PDL  D  DILA LQRR+FAF NEHG GGYE+F LAGQE  N I+Y+ASGDEYR HCDGYCDSSKF RGGRAAT+VLYCEE  RGGQTSFT ADI+LKG+AGQA FFHYRG D YMD GYTKHSGCPLVEGNK I TQWIR GVSAA P+Y ++PTGD+D
Sbjct:    6 IVNLVAAEAAEMELLNQASVDLDVYWRDENSGGTYTRISTIPKGTSGVIQTFQGHGFLLTGKGHVVGPLDRPNFLQQMKRHRVRASDSSQEELIFEDLDLGGEIDAPKDGRGKQHNESTGASTSSDVTAPPLEANVQLQISNQAGGAIYIYWLHPERGSFILLNTMSQGQSFKLNSFVGHRLLISQVPD-NHLDHSKAPNIIVHHDSGAFDVVSSNDITADVIV-----------KKHEESASRKTVA--AFPIEQ-PPPLVKPPATYHKSVTGQQVKEALKQCGGEASCIVDALYRGKLARIQRSIQKSMTERDELQEPYRDYACLHHETMGPEDMKVTYWTYPEDKFGAT----------------DSPSPVSGATPNN--KTVRVDHYFDSEWGNARIYLLHDIISPSECAALKNRSSGRLIHASVSGELPGQRIISSVRKAKSASISPDL-KDPTDILATLQRRVFAFANEHGCGGYESFDLAGQESLNAIVYDASGDEYRMHCDGYCDSSKFVRGGRAATMVLYCEEGARGGQTSFTNADIMLKGKAGQAAFFHYRGPDDYMDVGYTKHSGCPLVEGNKRITTQWIRRGVSAASPYYLYTPTGDRD 582
The following BLAST results are available for this feature:
BLAST of NO02G04790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852720.11.600e-16850.90prolyl 4- alpha subunit domain protein, partial [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04790NO02G04790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04790.1NO02G04790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04790.1.cds1NO02G04790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04790.1 ID=NO02G04790.1|Name=NO02G04790.1|organism=Nannochloropsis oceanica|type=mRNA|length=2036bp
CAACAGGATGAAGCACCTATGGACTAGGAGCCCTCGGCTTTCAGTGTTGG
TTGCAGCAGCCGCATTCCTTGTCGCCCATGCTGCCGCAGCTTTGAAAGCC
GTGACGGAGGTGGTGAATGACGCCTCTGTAGGCTTGGACGTATATTGGCG
AAACGAGGCAGAGGGTGGAGCCTACTCCTTAATAATGACCGTAGCCAGGG
GTGCACGGAGCACTGTCAATACTTTCCAAGGCCATGGTTTCTTGGTGACT
GCGCAAGGGACAGCCGTGAGTCCGTCGGATCGCCCAAACTTTATCCAGCA
GCTGGAGAAGCAAGCCTTGCGCGTCCGGGGCAATTCACGAGAGGATTTGG
CATTCGAAAACCTGGATATAAGCAAGATTATGTCAGGGACCAAGGACAAC
ACGAAGAAGCGCAACGCCACGGGCTTTACCTCTACGTCCTCGGAGGACGA
AGCCAAAGCTGCTCTTTCCGGCGAGTCTCAAGTTTTTGTCCGGAACGATG
CCGGCAAGACGGTATACGTGTACTGGTTGAAACCCGTTGACGGATTATAC
ATATTGGTGGGCACGATGTTCGATGGGCAGGAACTGAGTTTCGATTCGTT
TATCGGCCACGATATGCATGTTTCCGCATTCTCTGCGGTGGAAGCGGCGA
AAGACGATCAAGCTCCCAACCTCCCCGTGCGTCGCTCATCCCACACTCTG
CGTGTCTTGCCCTCCAATAACGATCGGGAGGATGTGGTGCTGCATATGGA
CCAATCGCCGGACAATCTGAAGAAGAAGAAGGAGAAGAAGAGTCCAGCAA
AAGCGTCTATCCCCCGAAAAACACAACCAAAAGAAAGCTCCCCCCCGCCC
CTCACAAAACCCGCCGCACGCTACCTCAAGACCGTCACTATCGAGCAGAC
TAAGCAAGCTATCCATACTTGCCAAGGTGAGGCCACCTGCATTGTAGATG
CGCTCTACCGAGGCAAGATCGCCAAGATTCAAAATAGCATCCAAAATGCC
ATGACCAAGCGGGATGACATGGAAGACAGATACCGTGATTATGCCTGCCT
GAACCACATAACAATGGGTCCCGAAGAAATAGAGACATCCTATTGGAATT
ATACGGACGAGGGGGTCGAAGCGGCAATGGCGGCGACGACGGCGTGTGAA
AACGACGAGAGCGGGATGTGCAAAGATAGTTCTTCGTCTTTATCTTCTTC
ATCTTTCAACGGCACCCAAAAGCAAATCCGCGTTGATCACTATTTTGACA
CTGACAAGGGAAACGCCAAGATCTATTTACTACATGACATCGTCACCCCC
ACCGAGTGTGCTGAGCTCCAAAAGCGAGCCACTGGGCGACTGGCCCCGGC
TACCACTACGGGCGACATCCCAGGGGAGAAGGTCGTGTCGGCAACCCGCA
AAGCCAAGGTGGCGATGGTCAGGCCCGATCTCGACAGCGATGCACACGAC
ATCCTCGCACCCTTGCAGCGTAGATTGTTTGCCTTCGTGAACGAGCATGG
AGGGGGAGGGTACGAGAATTTCGGGTTGGCGGGCCAGGAACCTTTCAATG
TAATCATGTACAATGCGTCGGGGGATGAATATCGACCACACTGTGACGGA
TACTGTGATTCAAGCAAGTTTGCTCGGGGTGGACGGGCGGCGACGGTGGT
GCTGTACTGCGAGGAGGCGGTCAGGGGGGGGCAGACGAGCTTTACGGCTG
CAGATATTTTGTTGAAGGGTCAGGCGGGCCAAGCGGTTTTTTTCCATTAC
CGTGGTGAGGATGGGTATATGGACAGTGGGTATACCAAACATAGTGGTTG
TCCGCTTGTAGAGGGAAATAAGTGGATTGCGACGCAGTGGATTCGGGGCG
GCGTCTCGGCTGCGATGCCCTGGTATTATTTCTCGCCCACTGGGGACCAG
GACTTGGCCGCTGGCAAAGTCTTTTCACAGGACCCACGTTATATGTGAAC
GAGTGGAGATAACACGTGGTTTGTAAGGAATAGAATGAAAAAAATGCACT
GAACAGCAAGATATCTGTGATTGAAGAAAAGGAACC
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protein sequence of NO02G04790.1

>NO02G04790.1-protein ID=NO02G04790.1-protein|Name=NO02G04790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=647bp
MKHLWTRSPRLSVLVAAAAFLVAHAAAALKAVTEVVNDASVGLDVYWRNE
AEGGAYSLIMTVARGARSTVNTFQGHGFLVTAQGTAVSPSDRPNFIQQLE
KQALRVRGNSREDLAFENLDISKIMSGTKDNTKKRNATGFTSTSSEDEAK
AALSGESQVFVRNDAGKTVYVYWLKPVDGLYILVGTMFDGQELSFDSFIG
HDMHVSAFSAVEAAKDDQAPNLPVRRSSHTLRVLPSNNDREDVVLHMDQS
PDNLKKKKEKKSPAKASIPRKTQPKESSPPPLTKPAARYLKTVTIEQTKQ
AIHTCQGEATCIVDALYRGKIAKIQNSIQNAMTKRDDMEDRYRDYACLNH
ITMGPEEIETSYWNYTDEGVEAAMAATTACENDESGMCKDSSSSLSSSSF
NGTQKQIRVDHYFDTDKGNAKIYLLHDIVTPTECAELQKRATGRLAPATT
TGDIPGEKVVSATRKAKVAMVRPDLDSDAHDILAPLQRRLFAFVNEHGGG
GYENFGLAGQEPFNVIMYNASGDEYRPHCDGYCDSSKFARGGRAATVVLY
CEEAVRGGQTSFTAADILLKGQAGQAVFFHYRGEDGYMDSGYTKHSGCPL
VEGNKWIATQWIRGGVSAAMPWYYFSPTGDQDLAAGKVFSQDPRYM*
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mRNA from alignment at chr2:1292775..1294810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04790.1 ID=NO02G04790.1|Name=NO02G04790.1|organism=Nannochloropsis oceanica|type=mRNA|length=2036bp|location=Sequence derived from alignment at chr2:1292775..1294810- (Nannochloropsis oceanica)
CAACAGGATGAAGCACCTATGGACTAGGAGCCCTCGGCTTTCAGTGTTGG
TTGCAGCAGCCGCATTCCTTGTCGCCCATGCTGCCGCAGCTTTGAAAGCC
GTGACGGAGGTGGTGAATGACGCCTCTGTAGGCTTGGACGTATATTGGCG
AAACGAGGCAGAGGGTGGAGCCTACTCCTTAATAATGACCGTAGCCAGGG
GTGCACGGAGCACTGTCAATACTTTCCAAGGCCATGGTTTCTTGGTGACT
GCGCAAGGGACAGCCGTGAGTCCGTCGGATCGCCCAAACTTTATCCAGCA
GCTGGAGAAGCAAGCCTTGCGCGTCCGGGGCAATTCACGAGAGGATTTGG
CATTCGAAAACCTGGATATAAGCAAGATTATGTCAGGGACCAAGGACAAC
ACGAAGAAGCGCAACGCCACGGGCTTTACCTCTACGTCCTCGGAGGACGA
AGCCAAAGCTGCTCTTTCCGGCGAGTCTCAAGTTTTTGTCCGGAACGATG
CCGGCAAGACGGTATACGTGTACTGGTTGAAACCCGTTGACGGATTATAC
ATATTGGTGGGCACGATGTTCGATGGGCAGGAACTGAGTTTCGATTCGTT
TATCGGCCACGATATGCATGTTTCCGCATTCTCTGCGGTGGAAGCGGCGA
AAGACGATCAAGCTCCCAACCTCCCCGTGCGTCGCTCATCCCACACTCTG
CGTGTCTTGCCCTCCAATAACGATCGGGAGGATGTGGTGCTGCATATGGA
CCAATCGCCGGACAATCTGAAGAAGAAGAAGGAGAAGAAGAGTCCAGCAA
AAGCGTCTATCCCCCGAAAAACACAACCAAAAGAAAGCTCCCCCCCGCCC
CTCACAAAACCCGCCGCACGCTACCTCAAGACCGTCACTATCGAGCAGAC
TAAGCAAGCTATCCATACTTGCCAAGGTGAGGCCACCTGCATTGTAGATG
CGCTCTACCGAGGCAAGATCGCCAAGATTCAAAATAGCATCCAAAATGCC
ATGACCAAGCGGGATGACATGGAAGACAGATACCGTGATTATGCCTGCCT
GAACCACATAACAATGGGTCCCGAAGAAATAGAGACATCCTATTGGAATT
ATACGGACGAGGGGGTCGAAGCGGCAATGGCGGCGACGACGGCGTGTGAA
AACGACGAGAGCGGGATGTGCAAAGATAGTTCTTCGTCTTTATCTTCTTC
ATCTTTCAACGGCACCCAAAAGCAAATCCGCGTTGATCACTATTTTGACA
CTGACAAGGGAAACGCCAAGATCTATTTACTACATGACATCGTCACCCCC
ACCGAGTGTGCTGAGCTCCAAAAGCGAGCCACTGGGCGACTGGCCCCGGC
TACCACTACGGGCGACATCCCAGGGGAGAAGGTCGTGTCGGCAACCCGCA
AAGCCAAGGTGGCGATGGTCAGGCCCGATCTCGACAGCGATGCACACGAC
ATCCTCGCACCCTTGCAGCGTAGATTGTTTGCCTTCGTGAACGAGCATGG
AGGGGGAGGGTACGAGAATTTCGGGTTGGCGGGCCAGGAACCTTTCAATG
TAATCATGTACAATGCGTCGGGGGATGAATATCGACCACACTGTGACGGA
TACTGTGATTCAAGCAAGTTTGCTCGGGGTGGACGGGCGGCGACGGTGGT
GCTGTACTGCGAGGAGGCGGTCAGGGGGGGGCAGACGAGCTTTACGGCTG
CAGATATTTTGTTGAAGGGTCAGGCGGGCCAAGCGGTTTTTTTCCATTAC
CGTGGTGAGGATGGGTATATGGACAGTGGGTATACCAAACATAGTGGTTG
TCCGCTTGTAGAGGGAAATAAGTGGATTGCGACGCAGTGGATTCGGGGCG
GCGTCTCGGCTGCGATGCCCTGGTATTATTTCTCGCCCACTGGGGACCAG
GACTTGGCCGCTGGCAAAGTCTTTTCACAGGACCCACGTTATATGTGAAC
GAGTGGAGATAACACGTGGTTTGTAAGGAATAGAATGAAAAAAATGCACT
GAACAGCAAGATATCTGTGATTGAAGAAAAGGAACC
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Coding sequence (CDS) from alignment at chr2:1292775..1294810-

>NO02G04790.1 ID=NO02G04790.1|Name=NO02G04790.1|organism=Nannochloropsis oceanica|type=CDS|length=1941bp|location=Sequence derived from alignment at chr2:1292775..1294810- (Nannochloropsis oceanica)
ATGAAGCACCTATGGACTAGGAGCCCTCGGCTTTCAGTGTTGGTTGCAGC
AGCCGCATTCCTTGTCGCCCATGCTGCCGCAGCTTTGAAAGCCGTGACGG
AGGTGGTGAATGACGCCTCTGTAGGCTTGGACGTATATTGGCGAAACGAG
GCAGAGGGTGGAGCCTACTCCTTAATAATGACCGTAGCCAGGGGTGCACG
GAGCACTGTCAATACTTTCCAAGGCCATGGTTTCTTGGTGACTGCGCAAG
GGACAGCCGTGAGTCCGTCGGATCGCCCAAACTTTATCCAGCAGCTGGAG
AAGCAAGCCTTGCGCGTCCGGGGCAATTCACGAGAGGATTTGGCATTCGA
AAACCTGGATATAAGCAAGATTATGTCAGGGACCAAGGACAACACGAAGA
AGCGCAACGCCACGGGCTTTACCTCTACGTCCTCGGAGGACGAAGCCAAA
GCTGCTCTTTCCGGCGAGTCTCAAGTTTTTGTCCGGAACGATGCCGGCAA
GACGGTATACGTGTACTGGTTGAAACCCGTTGACGGATTATACATATTGG
TGGGCACGATGTTCGATGGGCAGGAACTGAGTTTCGATTCGTTTATCGGC
CACGATATGCATGTTTCCGCATTCTCTGCGGTGGAAGCGGCGAAAGACGA
TCAAGCTCCCAACCTCCCCGTGCGTCGCTCATCCCACACTCTGCGTGTCT
TGCCCTCCAATAACGATCGGGAGGATGTGGTGCTGCATATGGACCAATCG
CCGGACAATCTGAAGAAGAAGAAGGAGAAGAAGAGTCCAGCAAAAGCGTC
TATCCCCCGAAAAACACAACCAAAAGAAAGCTCCCCCCCGCCCCTCACAA
AACCCGCCGCACGCTACCTCAAGACCGTCACTATCGAGCAGACTAAGCAA
GCTATCCATACTTGCCAAGGTGAGGCCACCTGCATTGTAGATGCGCTCTA
CCGAGGCAAGATCGCCAAGATTCAAAATAGCATCCAAAATGCCATGACCA
AGCGGGATGACATGGAAGACAGATACCGTGATTATGCCTGCCTGAACCAC
ATAACAATGGGTCCCGAAGAAATAGAGACATCCTATTGGAATTATACGGA
CGAGGGGGTCGAAGCGGCAATGGCGGCGACGACGGCGTGTGAAAACGACG
AGAGCGGGATGTGCAAAGATAGTTCTTCGTCTTTATCTTCTTCATCTTTC
AACGGCACCCAAAAGCAAATCCGCGTTGATCACTATTTTGACACTGACAA
GGGAAACGCCAAGATCTATTTACTACATGACATCGTCACCCCCACCGAGT
GTGCTGAGCTCCAAAAGCGAGCCACTGGGCGACTGGCCCCGGCTACCACT
ACGGGCGACATCCCAGGGGAGAAGGTCGTGTCGGCAACCCGCAAAGCCAA
GGTGGCGATGGTCAGGCCCGATCTCGACAGCGATGCACACGACATCCTCG
CACCCTTGCAGCGTAGATTGTTTGCCTTCGTGAACGAGCATGGAGGGGGA
GGGTACGAGAATTTCGGGTTGGCGGGCCAGGAACCTTTCAATGTAATCAT
GTACAATGCGTCGGGGGATGAATATCGACCACACTGTGACGGATACTGTG
ATTCAAGCAAGTTTGCTCGGGGTGGACGGGCGGCGACGGTGGTGCTGTAC
TGCGAGGAGGCGGTCAGGGGGGGGCAGACGAGCTTTACGGCTGCAGATAT
TTTGTTGAAGGGTCAGGCGGGCCAAGCGGTTTTTTTCCATTACCGTGGTG
AGGATGGGTATATGGACAGTGGGTATACCAAACATAGTGGTTGTCCGCTT
GTAGAGGGAAATAAGTGGATTGCGACGCAGTGGATTCGGGGCGGCGTCTC
GGCTGCGATGCCCTGGTATTATTTCTCGCCCACTGGGGACCAGGACTTGG
CCGCTGGCAAAGTCTTTTCACAGGACCCACGTTATATGTGA
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Synonyms
Publications