NO02G04770.1, NO02G04770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04770.1
Unique NameNO02G04770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1851
Alignment locationchr2:1286850..1288939 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1286850..1288939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04770.1 vs.
Match: XP_013883210.1 (PREDICTED: zinc finger BED domain-containing protein 4-like [Austrofundulus limnaeus])

HSP 1 Score: 107.8 bits (268), Expect = 1.200e-19
Identity = 96/406 (23.65%), Postives = 174/406 (42.86%), Query Frame = 0 
Query:  187 LYCMACDSWLKGAASQCGDHLRHCHPEEWARVKRLKAGDEEYDTMSALSSGSKKVQTKLHHHQYW-RGDALQRG-HKYLTGFLLRSLRPFNLVSDLGFRDFVGAIGPQYKLPTTRTIKKYVNAMFAKGKGLIKGFLAPLTLDDGAGPACGMTACLQTDAWAGRNGKSYNGTLATTLDDDFRGRLICLDMVECQKKHHTAAVITDLLKASLDDFKIPAANIFRTVHDAGSNVKKGVPDAGLKSSSCTTHALQRTILNSLNHSPAIKTMIKKVKAAVKAVRQSHSQTAYLREARVAAGVFDHQLVQANATRWSSLANACDRLLEQRPALESAYAADDRARTSRRIREVVFPVDKRIDPDTFAGVCDLLAVLDPFRKFTTVLQADFGTAGKVVPAIFKLQALVTADKVK 591
            L  M  D+  K   S    HL+  H E +   ++ K  D++  + S  SS    V       + W + D+  +     +T  +    +PF +VSD+GF+  V  + P+Y   T +T K Y   +  +    +   +  L   D AGP    T    TD W+G   +S        +D D+  + I L+ V+     HT   I+++  + L  + I    +   + D+G+N+ KG+    +   SC+ H LQ  +   +N   A+   + K+K++      S      L   +    +  H+++QA  TRW+S  +  +R+LEQ+ AL + YA D    ++             +  D +  V +L+A L P  + T  +     +   ++P+I  L+  +  +  K
Sbjct:   29 LVSMGADTGKKKNTSNMWTHLKRHHLEAFNDTQKRK--DDQAASSSKESSKQPTVMQXFDAKRKWAKSDSRSKKIDAVITEMIATDNQPFTVVSDIGFQRLVALLEPRY---TLKTEKYYRTDLMDEVHTKVVNKIKELVKLDNAGPYLSFT----TDCWSGET-ESLMSLTCHFIDSDWERKQIVLN-VKAMHGSHTGEYISEMFLSLLRHWDIETERVMLVLRDSGANMVKGLRIIEIPDLSCSAHTLQLVVNEGINSQRAVVDSVAKLKSSASHFNHSVLAKQRLTVIQKDLDLPQHRIIQAVPTRWNSTVHMLERMLEQKRAL-NVYAGDHGKIST-------------LSADQWTLVSNLIATLGPLEQVTLEMSKSDASISCIIPSIAVLKMALETEGPK 409
The following BLAST results are available for this feature:
BLAST of NO02G04770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_013883210.11.200e-1923.65PREDICTED: zinc finger BED domain-containing prote... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04770NO02G04770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04770.1NO02G04770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04770.1.cds1NO02G04770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04770.1.cds2NO02G04770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04770.1.cds3NO02G04770.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04770.1 ID=NO02G04770.1|Name=NO02G04770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1851bp
ATGGCCTGCGATTCGTGGCTGAAGGGAGCCGCGTCGCAGTGTGGCGACCA
CCTGAGGCATTGCCACCCGGAGGAGTGGGCTCGCGTCAAACGCCTCAAAG
CTGGAGACGAAGAGTATGACACCATGTCAGCCTTGTCTTCTGGGTCGAAG
AAGGTGCAGACCAAGCTCCATCACCACCAATACTGGCGGGGGGATGCCCT
CCAGCGCGGGCACAAGTACCTTACAGGCTTCTTGCTCCGCAGCCTCCGAC
CCTTCAACCTCGTCAGCGACCTCGGCTTTAGGGACTTCGTCGGGGCCATC
GGCCCCCAATACAAATTGCCTACGACCCGGACAATCAAGAACATGTCTGA
CATGTCCTCAGACGAAGAAGGCGTTGCTGCCGCGTCCACCACCAGCAGCT
TGGCAGGGTCTGCTCGGGAGGCAGATGCGCGTGAGCGGGGCAAGCGCGCC
AAAGACCTCGACATCTACCCCACGGCACCACGGCAAGACAAGGAGAAATC
CTTCGTGTGGCGTTCCGTCCACATCTACAAGCCCTTCAGAAAGGATTCAA
GGGGAAACCTTTACTGCATGGCCTGCGATTCGTGGCTGAAGGGAGCCGCG
TCGCAGTGTGGCGACCACCTGAGGCATTGCCACCCGGAGGAGTGGGCTCG
CGTCAAACGCCTCAAAGCTGGAGACGAAGAGTATGACACCATGTCAGCCT
TGTCTTCTGGGTCGAAGAAGGTGCAGACCAAGCTCCATCACCACCAATAC
TGGCGGGGGGATGCCCTCCAGCGCGGGCACAAGTACCTTACAGGCTTCTT
GCTCCGCAGCCTCCGACCCTTCAACCTCGTCAGCGACCTCGGCTTTAGGG
ACTTCGTCGGGGCCATCGGCCCCCAATACAAATTGCCTACGACCCGGACA
ATCAAGAAGTACGTGAATGCGATGTTTGCCAAAGGCAAGGGGCTCATCAA
GGGCTTCCTCGCCCCGCTGACCTTGGATGATGGGGCCGGTCCAGCGTGTG
GTATGACTGCCTGCCTTCAAACGGATGCGTGGGCTGGACGCAATGGCAAG
TCCTACAACGGCACGCTTGCCACCACGCTGGACGACGACTTCAGGGGCCG
CCTCATCTGCCTGGACATGGTGGAGTGCCAGAAGAAGCACCACACGGCCG
CGGTGATCACTGATTTGCTGAAGGCGTCGTTGGACGACTTCAAGATTCCT
GCTGCAAACATCTTCCGCACTGTGCACGACGCTGGGTCCAACGTCAAGAA
AGGCGTGCCCGACGCTGGGCTCAAGTCCTCCTCGTGTACCACACATGCCT
TGCAGCGGACCATCCTCAACTCGCTCAACCACAGCCCTGCCATCAAGACC
ATGATCAAGAAGGTAAAGGCAGCTGTGAAGGCCGTCCGTCAAAGCCACTC
CCAGACAGCTTATCTCAGGGAGGCACGAGTGGCAGCAGGCGTTTTCGACC
ACCAGCTTGTCCAAGCTAACGCCACACGTTGGAGCTCTCTCGCGAATGCT
TGTGATCGCTTGCTGGAGCAGCGGCCCGCCCTCGAGTCGGCGTACGCGGC
CGATGATAGGGCCCGCACCAGCCGCCGTATCAGGGAGGTCGTCTTCCCTG
TGGACAAGCGCATCGATCCGGACACCTTCGCCGGTGTGTGCGATCTCCTT
GCCGTGCTTGACCCCTTTCGGAAGTTCACCACGGTTCTTCAGGCGGACTT
TGGCACAGCTGGGAAGGTGGTGCCTGCCATCTTCAAGCTACAGGCGCTCG
TGACTGCTGACAAGGTGAAAGTAGTCACGCCTAGGTCTGGGCCGAACCAT
CCCGGGTCGTCGGCCGAGGTGCTCGCCACGGACCTCCACCCCGCCGTTTA
G
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protein sequence of NO02G04770.1

>NO02G04770.1-protein ID=NO02G04770.1-protein|Name=NO02G04770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=617bp
MACDSWLKGAASQCGDHLRHCHPEEWARVKRLKAGDEEYDTMSALSSGSK
KVQTKLHHHQYWRGDALQRGHKYLTGFLLRSLRPFNLVSDLGFRDFVGAI
GPQYKLPTTRTIKNMSDMSSDEEGVAAASTTSSLAGSAREADARERGKRA
KDLDIYPTAPRQDKEKSFVWRSVHIYKPFRKDSRGNLYCMACDSWLKGAA
SQCGDHLRHCHPEEWARVKRLKAGDEEYDTMSALSSGSKKVQTKLHHHQY
WRGDALQRGHKYLTGFLLRSLRPFNLVSDLGFRDFVGAIGPQYKLPTTRT
IKKYVNAMFAKGKGLIKGFLAPLTLDDGAGPACGMTACLQTDAWAGRNGK
SYNGTLATTLDDDFRGRLICLDMVECQKKHHTAAVITDLLKASLDDFKIP
AANIFRTVHDAGSNVKKGVPDAGLKSSSCTTHALQRTILNSLNHSPAIKT
MIKKVKAAVKAVRQSHSQTAYLREARVAAGVFDHQLVQANATRWSSLANA
CDRLLEQRPALESAYAADDRARTSRRIREVVFPVDKRIDPDTFAGVCDLL
AVLDPFRKFTTVLQADFGTAGKVVPAIFKLQALVTADKVKVVTPRSGPNH
PGSSAEVLATDLHPAV*
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mRNA from alignment at chr2:1286850..1288939-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04770.1 ID=NO02G04770.1|Name=NO02G04770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2090bp|location=Sequence derived from alignment at chr2:1286850..1288939- (Nannochloropsis oceanica)
ATGGCCTGCGATTCGTGGCTGAAGGGAGCCGCGTCGCAGTGTGGCGACCA
CCTGAGGCATTGCCACCCGGAGGAGTGGGCTCGCGTCAAACGCCTCAAAG
CTGGAGACGAAGAGTATGACACCATGTCAGCCTTGTCTTCTGGGTCGAAG
AAGGTGCAGACCAAGCTCCATCACCACCAATACTGGCGGGGGGATGCCCT
CCAGCGCGGGCACAAGTACCTTACAGGCTTCTTGCTCCGCAGCCTCCGAC
CCTTCAACCTCGTCAGCGACCTCGGCTTTAGGGACTTCGTCGGGGCCATC
GGCCCCCAATACAAATTGCCTACGACCCGGACAATCAAGAAGTACGTGAA
TGCGATGTTTGCCAAAGGCAAGGGGCTCATCAAGGGCTTCCTCGCCCCGC
TGACCTTGGATGATGGGGCCGGTCCAGCGTGTGGTATGACACGACTGATT
GCTGACAAATGACACACACACGCACACTTACAGCATGTCTGACATGTCCT
CAGACGAAGAAGGCGTTGCTGCCGCGTCCACCACCAGCAGCTTGGCAGGG
TCTGCTCGGGAGGCAGATGCGCGTGAGCGGGGCAAGCGCGCCAAAGACCT
CGACATCTACCCCACGGCACCACGGCAAGACAAGGAGAAATCCTTCGTGT
GGCGTTCCGTCCACATCTACAAGCCCTTCAGAAAGGATTCAAGGGGAAAC
CTTTACTGCATGGCCTGCGATTCGTGGCTGAAGGGAGCCGCGTCGCAGTG
TGGCGACCACCTGAGGCATTGCCACCCGGAGGAGTGGGCTCGCGTCAAAC
GCCTCAAAGCTGGAGACGAAGAGTATGACACCATGTCAGCCTTGTCTTCT
GGGTCGAAGAAGGTGCAGACCAAGCTCCATCACCACCAATACTGGCGGGG
GGATGCCCTCCAGCGCGGGCACAAGTACCTTACAGGCTTCTTGCTCCGCA
GCCTCCGACCCTTCAACCTCGTCAGCGACCTCGGCTTTAGGGACTTCGTC
GGGGCCATCGGCCCCCAATACAAATTGCCTACGACCCGGACAATCAAGAA
GTACGTGAATGCGATGTTTGCCAAAGGCAAGGGGCTCATCAAGGGCTTCC
TCGCCCCGCTGACCTTGGATGATGGGGCCGGTCCAGCGTGTGGTATGACT
GCCTGCCTTCAAACGGATGCGTGGGCTGGACGCAATGGCAAGTCCTACAA
CGGCACGCTTGCCACCACGCTGGACGACGACTTCAGGGGCCGCCTCATCT
GCCTGGACATGGTGGAGTGCCAGAAGAAGCACCACACGGCCGCGGTGATC
ACTGATTTGCTGAAGGCGTCGTTGGACGACTTCAAGATTCCTGCTGCAAA
CATCTTCCGCACTGTGCACGACGCTGGGTCCAACGTCAAGAAAGGTGAGA
TGCATATATTTAACTATCTATTAAACGTTGCACCTAATGTATTTTCAACT
TGGCGCTCACACACACACACACACATACATACACATGACAGGCGTGCCCG
ACGCTGGGCTCAAGTCCTCCTCGTGTACCACACATGCCTTGCAGCGGACC
ATCCTCAACTCGCTCAACCACAGCCCTGCCATCAAGACCATGATCAAGAA
GGTAAAGGCAGCTGTGAAGGCCGTCCGTCAAAGCCACTCCCAGACAGCTT
ATCTCAGGGAGGCACGAGTGGCAGCAGGCGTTTTCGACCACCAGCTTGTC
CAAGCTAACGCCACACGTTGGAGCTCTCTCGCGAATGCTTGTGATCGCTT
GCTGGAGCAGCGGCCCGCCCTCGAGTCGGCGTACGCGGCCGATGATAGGG
CCCGCACCAGCCGCCGTATCAGGGAGGTCGTCTTCCCTGTGGACAAGCGC
ATCGATCCGGACACCTTCGCCGGTGTGTGCGATCTCCTTGCCGTGCTTGA
CCCCTTTCGGAAGTTCACCACGGTTCTTCAGGCGGACTTTGGCACAGCTG
GGAAGGTGGTGCCTGCCATCTTCAAGCTACAGGCGCTCGTGACTGCTGAC
AAGGTGAAAGTAGTCACGCCTAGGTCTGGGCCGAACCATCCCGGGTCGTC
GGCCGAGGTGCTCGCCACGGACCTCCACCCCGCCGTTTAG
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Coding sequence (CDS) from alignment at chr2:1286850..1288939-

>NO02G04770.1 ID=NO02G04770.1|Name=NO02G04770.1|organism=Nannochloropsis oceanica|type=CDS|length=1851bp|location=Sequence derived from alignment at chr2:1286850..1288939- (Nannochloropsis oceanica)
ATGGCCTGCGATTCGTGGCTGAAGGGAGCCGCGTCGCAGTGTGGCGACCA
CCTGAGGCATTGCCACCCGGAGGAGTGGGCTCGCGTCAAACGCCTCAAAG
CTGGAGACGAAGAGTATGACACCATGTCAGCCTTGTCTTCTGGGTCGAAG
AAGGTGCAGACCAAGCTCCATCACCACCAATACTGGCGGGGGGATGCCCT
CCAGCGCGGGCACAAGTACCTTACAGGCTTCTTGCTCCGCAGCCTCCGAC
CCTTCAACCTCGTCAGCGACCTCGGCTTTAGGGACTTCGTCGGGGCCATC
GGCCCCCAATACAAATTGCCTACGACCCGGACAATCAAGAACATGTCTGA
CATGTCCTCAGACGAAGAAGGCGTTGCTGCCGCGTCCACCACCAGCAGCT
TGGCAGGGTCTGCTCGGGAGGCAGATGCGCGTGAGCGGGGCAAGCGCGCC
AAAGACCTCGACATCTACCCCACGGCACCACGGCAAGACAAGGAGAAATC
CTTCGTGTGGCGTTCCGTCCACATCTACAAGCCCTTCAGAAAGGATTCAA
GGGGAAACCTTTACTGCATGGCCTGCGATTCGTGGCTGAAGGGAGCCGCG
TCGCAGTGTGGCGACCACCTGAGGCATTGCCACCCGGAGGAGTGGGCTCG
CGTCAAACGCCTCAAAGCTGGAGACGAAGAGTATGACACCATGTCAGCCT
TGTCTTCTGGGTCGAAGAAGGTGCAGACCAAGCTCCATCACCACCAATAC
TGGCGGGGGGATGCCCTCCAGCGCGGGCACAAGTACCTTACAGGCTTCTT
GCTCCGCAGCCTCCGACCCTTCAACCTCGTCAGCGACCTCGGCTTTAGGG
ACTTCGTCGGGGCCATCGGCCCCCAATACAAATTGCCTACGACCCGGACA
ATCAAGAAGTACGTGAATGCGATGTTTGCCAAAGGCAAGGGGCTCATCAA
GGGCTTCCTCGCCCCGCTGACCTTGGATGATGGGGCCGGTCCAGCGTGTG
GTATGACTGCCTGCCTTCAAACGGATGCGTGGGCTGGACGCAATGGCAAG
TCCTACAACGGCACGCTTGCCACCACGCTGGACGACGACTTCAGGGGCCG
CCTCATCTGCCTGGACATGGTGGAGTGCCAGAAGAAGCACCACACGGCCG
CGGTGATCACTGATTTGCTGAAGGCGTCGTTGGACGACTTCAAGATTCCT
GCTGCAAACATCTTCCGCACTGTGCACGACGCTGGGTCCAACGTCAAGAA
AGGCGTGCCCGACGCTGGGCTCAAGTCCTCCTCGTGTACCACACATGCCT
TGCAGCGGACCATCCTCAACTCGCTCAACCACAGCCCTGCCATCAAGACC
ATGATCAAGAAGGTAAAGGCAGCTGTGAAGGCCGTCCGTCAAAGCCACTC
CCAGACAGCTTATCTCAGGGAGGCACGAGTGGCAGCAGGCGTTTTCGACC
ACCAGCTTGTCCAAGCTAACGCCACACGTTGGAGCTCTCTCGCGAATGCT
TGTGATCGCTTGCTGGAGCAGCGGCCCGCCCTCGAGTCGGCGTACGCGGC
CGATGATAGGGCCCGCACCAGCCGCCGTATCAGGGAGGTCGTCTTCCCTG
TGGACAAGCGCATCGATCCGGACACCTTCGCCGGTGTGTGCGATCTCCTT
GCCGTGCTTGACCCCTTTCGGAAGTTCACCACGGTTCTTCAGGCGGACTT
TGGCACAGCTGGGAAGGTGGTGCCTGCCATCTTCAAGCTACAGGCGCTCG
TGACTGCTGACAAGGTGAAAGTAGTCACGCCTAGGTCTGGGCCGAACCAT
CCCGGGTCGTCGGCCGAGGTGCTCGCCACGGACCTCCACCCCGCCGTTTA
G
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Synonyms
Publications