NO02G04700.1, NO02G04700.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G04700.1
Unique Name	NO02G04700.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2522
Alignment location	chr2:1275562..1278083 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:1275562..1278083 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO02G04700.1 vs.
Match: KZS95077.1 (kinase-like protein [Sistotremastrum niveocremeum HHB9708])

HSP 1 Score: 87.8 bits (216), Expect = 1.700e-13
Identity = 72/249 (28.92%), Postives = 107/249 (42.97%), Query Frame = 0

Query:  284 IAMELCLHGSLRDALHPSLRPARPPTLPLTWLHKVRIASDIAEGLTFLHAHHLLHRDLKTTNILLSSLPSSSSSPRAQICDHAFVSSSLSPDIS---LFTCGTFEFQAPELLLNEPGVVIGDKVDVFSLGVILCEMITGTIPGGAAVGAEEGRDGCEEEGDINTRIALHDLAEGGRERGVGGIFMERRAEELFAVRGEEVEERVVEGCPPSLLMLALQCVGQEWEDRPTAREAWEWAEALWKEMKEEEE 530
            I  E    G++R  +H   +P         W  +V  A D+A  L +LHA   +HRDLK  N+LL++      + R +I D  F   +   D     +  CGT  + +PE+LL E     G   D+FSLGVI CE+I+ T                              LA+  R     G F  RR    + +  +EV ++  +GCP   + L+L C+  E  DRP  RE  E    +  E+ + E+
Sbjct:   86 IVSEFVEGGNMRSYIHHKRKP-------FPWTMRVSFAIDVARALAYLHARKCIHRDLKPENLLLTA------NGRVKITDFGFARIAPRNDDEQKRITFCGTDAYMSPEILLGES---FGLSTDIFSLGVIFCEVISRT------------------------------LADDSR-----GDF--RRNPATWGLDAQEVRQKANDGCPEDFVQLSLDCLKLEPNDRPDCREILERLSRIEVEILQREK 281

The following BLAST results are available for this feature:

BLAST of NO02G04700.1 vs.

BLAST of NO02G04700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
KZS95077.1	1.700e-13	28.92	kinase-like protein [Sistotremastrum niveocremeum ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G04700	NO02G04700	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G04700.1	NO02G04700.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G04700.1.cds1	NO02G04700.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:1275562..1278083+
coding sequence from alignment at chr2:1275562..1278083+

mRNA sequence

>NO02G04700.1 ID=NO02G04700.1|Name=NO02G04700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2522bp
ACAGGATCTCATCGAGTTATTCTTAAGTTGATATCCATGAGCATCCGGGC
TTGACTTCACTTTTCAAAAGACAGCAACATCACGCAATCATCATGTCCTC
CCGGCCGCCCACAACGCCTTCCCGTGGAAACAGCGCCCCCCTCATGTGCA
GTCCTTTTACGCCCAGGGCACGGCAGACAGCTTTGGACCGATTGCCGCAC
CATTTGGGCTCCCTGAGCTTTGACACGGAGGACGGAGATGACGAGGATGT
GGAGGAGATGATGTCCATGACCCCTTTGGAGTCGCAGCAGCAGCAGCCCC
CCCTAACACTCAACAAAACACGCACTGTGTTGCCATTACCCGCAGCGTCG
CCCACCACACAGCAGGCTCTGTCCCCGCGTGCATGGTCTCCGTCGTTCCG
CCCGTCGACCCCGGTGGGGAAGGGGTTTCACCTGAACCCGCAAGACCTGA
CGTTCGGGGATCGCTTGGCTGAAGGTGCTTATGGCGTGGTTTGGCTCGCT
CGAATGCGTCGACCTCGTCGTGCTTCAGTAGGAGAGAAGGAGGAAGAGGT
GGCTGTGAAAGTGCAAAGAGTTCCATGGAATGAACAAGAGCAGGCGAACC
TTTTGATTGAATTGTCGATTCTGCATGGGTTGGTGCATCCGCGGCTGGTC
CGTTACTATGGTGCAGCCTTGCTGTCGGAAGAGGAGGCGATGGGGAAGGA
AGAATGGAGGCCATTGTTACACGGGCCTAAGAATCCGTTCTGTGAGGCGA
GGGAGGAAGGATGGATTGTGGGGATGGAGAAGGAGGAGGAGAAAGGGAAG
GGGGCGGACGAGGAGGAGGAGGAGGCGGAGGAGGAGGAGGAGGAGGGAGA
AGACACGATTCTCAAGGATAATGTGGGCATTCACACCCTTTCCCGACTCC
AATCTCCCACTAACAACTCCCCCGTCCCCTTTCTCGTCCTCATCGCCATG
GAGCTGTGTCTCCACGGCTCCCTTCGCGATGCTCTCCACCCCTCCCTCCG
CCCCGCCCGCCCCCCCACCCTCCCTCTCACCTGGCTCCACAAAGTTCGGA
TCGCAAGCGACATTGCCGAAGGCCTCACGTTTCTCCATGCCCATCACCTG
CTTCATCGCGACCTGAAAACCACCAACATCCTCCTCTCCTCCCTCCCTTC
CTCCTCCTCCTCCCCCCGCGCCCAAATATGCGACCACGCATTCGTGTCCT
CCTCCCTCTCGCCTGATATTTCCCTCTTTACCTGTGGGACCTTCGAATTT
CAAGCGCCCGAACTACTGCTGAACGAGCCTGGGGTGGTGATAGGCGACAA
GGTTGATGTCTTCAGCCTGGGAGTGATCCTGTGTGAAATGATCACGGGTA
CTATACCCGGAGGTGCTGCCGTGGGAGCGGAGGAGGGACGGGATGGATGT
GAGGAAGAGGGTGACATCAATACGAGGATAGCCCTCCATGATTTGGCCGA
GGGCGGGAGGGAGCGCGGGGTGGGGGGAATCTTCATGGAGCGCAGAGCCG
AGGAGTTGTTCGCAGTCCGGGGGGAGGAGGTGGAGGAGAGAGTGGTGGAA
GGTTGCCCCCCGTCGTTGTTGATGCTGGCATTGCAGTGTGTGGGGCAGGA
ATGGGAGGACAGACCGACGGCCAGGGAGGCTTGGGAGTGGGCCGAAGCGC
TGTGGAAGGAGATGAAGGAGGAGGAGGAGGGAGGGAGGGAGAGAGGGGTG
CCGGTGGTGGAGGACGAGAGGTCGCCGTCGGAGGGAGGGGAGGAGGAAGG
GAGGGGGGAAGGAGGAGAATGGGAAGAGATGGACTTAGAAGCTACAGGGG
AGAGAGATGAAAGAGTGGATAGAGTGAGGGAGGTTGGCGGAAGCGGCAGC
AACAGCGACCGCAATCAGAGGCGTGCTGAGAGGAAGCGGAAGAAGAAACG
ACGACAACAGCAACGACGACAGCGGCTGCTTCAGCAGCAGCAGCAGCAGC
AGCAGCAACAACAACAACAACAGCAGCAACAACTCCAACAAGAGAGTAGA
GGTGAAGGTGAAGATGAAAAGCAGCAGCAGCGTCAGTTGAAGGATGATGC
TTCCCAGAAACAGCCGGCGTCAACAGGAGCAGGACGGGGTGGTGGTGGTG
GTGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGAAGAA
GAACAAGAAGAAGAAGAGAGGCACCAAGGAGTAACCAGCACAGCGCCGGC
TGCAGCTGCAGATGGATTCACAGGAAAAAGAAAAGAGGAGAAAGGGGGAG
AAGGAAGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGA
AGAGGAGGAGGAGGGAAGCGTCGCGGGGCTCGACAGCGGAACAGAAAACA
GGACCGTGACGAGAGCGACTTAAACCATTCATCCTCTATTCCTGGCATTC
CTCCCCTTCCTCCCCCCTCGACCTCCCCCTCCCCCTCCTCCTCCCCCCCC
CTTCCCTCCCATCCCCTTCTTCCCCCCCTGCCCCCTCCGTGGAGCAACCC
ATCACCCAAGGGAGTGTGTTAG

protein sequence of NO02G04700.1

>NO02G04700.1-protein ID=NO02G04700.1-protein|Name=NO02G04700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=810bp
MSSRPPTTPSRGNSAPLMCSPFTPRARQTALDRLPHHLGSLSFDTEDGDD
EDVEEMMSMTPLESQQQQPPLTLNKTRTVLPLPAASPTTQQALSPRAWSP
SFRPSTPVGKGFHLNPQDLTFGDRLAEGAYGVVWLARMRRPRRASVGEKE
EEVAVKVQRVPWNEQEQANLLIELSILHGLVHPRLVRYYGAALLSEEEAM
GKEEWRPLLHGPKNPFCEAREEGWIVGMEKEEEKGKGADEEEEEAEEEEE
EGEDTILKDNVGIHTLSRLQSPTNNSPVPFLVLIAMELCLHGSLRDALHP
SLRPARPPTLPLTWLHKVRIASDIAEGLTFLHAHHLLHRDLKTTNILLSS
LPSSSSSPRAQICDHAFVSSSLSPDISLFTCGTFEFQAPELLLNEPGVVI
GDKVDVFSLGVILCEMITGTIPGGAAVGAEEGRDGCEEEGDINTRIALHD
LAEGGRERGVGGIFMERRAEELFAVRGEEVEERVVEGCPPSLLMLALQCV
GQEWEDRPTAREAWEWAEALWKEMKEEEEGGRERGVPVVEDERSPSEGGE
EEGRGEGGEWEEMDLEATGERDERVDRVREVGGSGSNSDRNQRRAERKRK
KKRRQQQRRQRLLQQQQQQQQQQQQQQQQQLQQESRGEGEDEKQQQRQLK
DDASQKQPASTGAGRGGGGGEGGGGGGGGGGEGGEEEQEEEERHQGVTST
APAAAADGFTGKRKEEKGGEGRGEGGGGGGGEGGGGRGGGGKRRGARQRN
RKQDRDESDLNHSSSIPGIPPLPPPSTSPSPSSSPPLPSHPLLPPLPPPW
SNPSPKGVC*

mRNA from alignment at chr2:1275562..1278083+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G04700.1 ID=NO02G04700.1|Name=NO02G04700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2522bp|location=Sequence derived from alignment at chr2:1275562..1278083+ (Nannochloropsis oceanica)
ACAGGATCTCATCGAGTTATTCTTAAGTTGATATCCATGAGCATCCGGGC
TTGACTTCACTTTTCAAAAGACAGCAACATCACGCAATCATCATGTCCTC
CCGGCCGCCCACAACGCCTTCCCGTGGAAACAGCGCCCCCCTCATGTGCA
GTCCTTTTACGCCCAGGGCACGGCAGACAGCTTTGGACCGATTGCCGCAC
CATTTGGGCTCCCTGAGCTTTGACACGGAGGACGGAGATGACGAGGATGT
GGAGGAGATGATGTCCATGACCCCTTTGGAGTCGCAGCAGCAGCAGCCCC
CCCTAACACTCAACAAAACACGCACTGTGTTGCCATTACCCGCAGCGTCG
CCCACCACACAGCAGGCTCTGTCCCCGCGTGCATGGTCTCCGTCGTTCCG
CCCGTCGACCCCGGTGGGGAAGGGGTTTCACCTGAACCCGCAAGACCTGA
CGTTCGGGGATCGCTTGGCTGAAGGTGCTTATGGCGTGGTTTGGCTCGCT
CGAATGCGTCGACCTCGTCGTGCTTCAGTAGGAGAGAAGGAGGAAGAGGT
GGCTGTGAAAGTGCAAAGAGTTCCATGGAATGAACAAGAGCAGGCGAACC
TTTTGATTGAATTGTCGATTCTGCATGGGTTGGTGCATCCGCGGCTGGTC
CGTTACTATGGTGCAGCCTTGCTGTCGGAAGAGGAGGCGATGGGGAAGGA
AGAATGGAGGCCATTGTTACACGGGCCTAAGAATCCGTTCTGTGAGGCGA
GGGAGGAAGGATGGATTGTGGGGATGGAGAAGGAGGAGGAGAAAGGGAAG
GGGGCGGACGAGGAGGAGGAGGAGGCGGAGGAGGAGGAGGAGGAGGGAGA
AGACACGATTCTCAAGGATAATGTGGGCATTCACACCCTTTCCCGACTCC
AATCTCCCACTAACAACTCCCCCGTCCCCTTTCTCGTCCTCATCGCCATG
GAGCTGTGTCTCCACGGCTCCCTTCGCGATGCTCTCCACCCCTCCCTCCG
CCCCGCCCGCCCCCCCACCCTCCCTCTCACCTGGCTCCACAAAGTTCGGA
TCGCAAGCGACATTGCCGAAGGCCTCACGTTTCTCCATGCCCATCACCTG
CTTCATCGCGACCTGAAAACCACCAACATCCTCCTCTCCTCCCTCCCTTC
CTCCTCCTCCTCCCCCCGCGCCCAAATATGCGACCACGCATTCGTGTCCT
CCTCCCTCTCGCCTGATATTTCCCTCTTTACCTGTGGGACCTTCGAATTT
CAAGCGCCCGAACTACTGCTGAACGAGCCTGGGGTGGTGATAGGCGACAA
GGTTGATGTCTTCAGCCTGGGAGTGATCCTGTGTGAAATGATCACGGGTA
CTATACCCGGAGGTGCTGCCGTGGGAGCGGAGGAGGGACGGGATGGATGT
GAGGAAGAGGGTGACATCAATACGAGGATAGCCCTCCATGATTTGGCCGA
GGGCGGGAGGGAGCGCGGGGTGGGGGGAATCTTCATGGAGCGCAGAGCCG
AGGAGTTGTTCGCAGTCCGGGGGGAGGAGGTGGAGGAGAGAGTGGTGGAA
GGTTGCCCCCCGTCGTTGTTGATGCTGGCATTGCAGTGTGTGGGGCAGGA
ATGGGAGGACAGACCGACGGCCAGGGAGGCTTGGGAGTGGGCCGAAGCGC
TGTGGAAGGAGATGAAGGAGGAGGAGGAGGGAGGGAGGGAGAGAGGGGTG
CCGGTGGTGGAGGACGAGAGGTCGCCGTCGGAGGGAGGGGAGGAGGAAGG
GAGGGGGGAAGGAGGAGAATGGGAAGAGATGGACTTAGAAGCTACAGGGG
AGAGAGATGAAAGAGTGGATAGAGTGAGGGAGGTTGGCGGAAGCGGCAGC
AACAGCGACCGCAATCAGAGGCGTGCTGAGAGGAAGCGGAAGAAGAAACG
ACGACAACAGCAACGACGACAGCGGCTGCTTCAGCAGCAGCAGCAGCAGC
AGCAGCAACAACAACAACAACAGCAGCAACAACTCCAACAAGAGAGTAGA
GGTGAAGGTGAAGATGAAAAGCAGCAGCAGCGTCAGTTGAAGGATGATGC
TTCCCAGAAACAGCCGGCGTCAACAGGAGCAGGACGGGGTGGTGGTGGTG
GTGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGAAGAA
GAACAAGAAGAAGAAGAGAGGCACCAAGGAGTAACCAGCACAGCGCCGGC
TGCAGCTGCAGATGGATTCACAGGAAAAAGAAAAGAGGAGAAAGGGGGAG
AAGGAAGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGA
AGAGGAGGAGGAGGGAAGCGTCGCGGGGCTCGACAGCGGAACAGAAAACA
GGACCGTGACGAGAGCGACTTAAACCATTCATCCTCTATTCCTGGCATTC
CTCCCCTTCCTCCCCCCTCGACCTCCCCCTCCCCCTCCTCCTCCCCCCCC
CTTCCCTCCCATCCCCTTCTTCCCCCCCTGCCCCCTCCGTGGAGCAACCC
ATCACCCAAGGGAGTGTGTTAG

Coding sequence (CDS) from alignment at chr2:1275562..1278083+

>NO02G04700.1 ID=NO02G04700.1|Name=NO02G04700.1|organism=Nannochloropsis oceanica|type=CDS|length=2430bp|location=Sequence derived from alignment at chr2:1275562..1278083+ (Nannochloropsis oceanica)
ATGTCCTCCCGGCCGCCCACAACGCCTTCCCGTGGAAACAGCGCCCCCCT
CATGTGCAGTCCTTTTACGCCCAGGGCACGGCAGACAGCTTTGGACCGAT
TGCCGCACCATTTGGGCTCCCTGAGCTTTGACACGGAGGACGGAGATGAC
GAGGATGTGGAGGAGATGATGTCCATGACCCCTTTGGAGTCGCAGCAGCA
GCAGCCCCCCCTAACACTCAACAAAACACGCACTGTGTTGCCATTACCCG
CAGCGTCGCCCACCACACAGCAGGCTCTGTCCCCGCGTGCATGGTCTCCG
TCGTTCCGCCCGTCGACCCCGGTGGGGAAGGGGTTTCACCTGAACCCGCA
AGACCTGACGTTCGGGGATCGCTTGGCTGAAGGTGCTTATGGCGTGGTTT
GGCTCGCTCGAATGCGTCGACCTCGTCGTGCTTCAGTAGGAGAGAAGGAG
GAAGAGGTGGCTGTGAAAGTGCAAAGAGTTCCATGGAATGAACAAGAGCA
GGCGAACCTTTTGATTGAATTGTCGATTCTGCATGGGTTGGTGCATCCGC
GGCTGGTCCGTTACTATGGTGCAGCCTTGCTGTCGGAAGAGGAGGCGATG
GGGAAGGAAGAATGGAGGCCATTGTTACACGGGCCTAAGAATCCGTTCTG
TGAGGCGAGGGAGGAAGGATGGATTGTGGGGATGGAGAAGGAGGAGGAGA
AAGGGAAGGGGGCGGACGAGGAGGAGGAGGAGGCGGAGGAGGAGGAGGAG
GAGGGAGAAGACACGATTCTCAAGGATAATGTGGGCATTCACACCCTTTC
CCGACTCCAATCTCCCACTAACAACTCCCCCGTCCCCTTTCTCGTCCTCA
TCGCCATGGAGCTGTGTCTCCACGGCTCCCTTCGCGATGCTCTCCACCCC
TCCCTCCGCCCCGCCCGCCCCCCCACCCTCCCTCTCACCTGGCTCCACAA
AGTTCGGATCGCAAGCGACATTGCCGAAGGCCTCACGTTTCTCCATGCCC
ATCACCTGCTTCATCGCGACCTGAAAACCACCAACATCCTCCTCTCCTCC
CTCCCTTCCTCCTCCTCCTCCCCCCGCGCCCAAATATGCGACCACGCATT
CGTGTCCTCCTCCCTCTCGCCTGATATTTCCCTCTTTACCTGTGGGACCT
TCGAATTTCAAGCGCCCGAACTACTGCTGAACGAGCCTGGGGTGGTGATA
GGCGACAAGGTTGATGTCTTCAGCCTGGGAGTGATCCTGTGTGAAATGAT
CACGGGTACTATACCCGGAGGTGCTGCCGTGGGAGCGGAGGAGGGACGGG
ATGGATGTGAGGAAGAGGGTGACATCAATACGAGGATAGCCCTCCATGAT
TTGGCCGAGGGCGGGAGGGAGCGCGGGGTGGGGGGAATCTTCATGGAGCG
CAGAGCCGAGGAGTTGTTCGCAGTCCGGGGGGAGGAGGTGGAGGAGAGAG
TGGTGGAAGGTTGCCCCCCGTCGTTGTTGATGCTGGCATTGCAGTGTGTG
GGGCAGGAATGGGAGGACAGACCGACGGCCAGGGAGGCTTGGGAGTGGGC
CGAAGCGCTGTGGAAGGAGATGAAGGAGGAGGAGGAGGGAGGGAGGGAGA
GAGGGGTGCCGGTGGTGGAGGACGAGAGGTCGCCGTCGGAGGGAGGGGAG
GAGGAAGGGAGGGGGGAAGGAGGAGAATGGGAAGAGATGGACTTAGAAGC
TACAGGGGAGAGAGATGAAAGAGTGGATAGAGTGAGGGAGGTTGGCGGAA
GCGGCAGCAACAGCGACCGCAATCAGAGGCGTGCTGAGAGGAAGCGGAAG
AAGAAACGACGACAACAGCAACGACGACAGCGGCTGCTTCAGCAGCAGCA
GCAGCAGCAGCAGCAACAACAACAACAACAGCAGCAACAACTCCAACAAG
AGAGTAGAGGTGAAGGTGAAGATGAAAAGCAGCAGCAGCGTCAGTTGAAG
GATGATGCTTCCCAGAAACAGCCGGCGTCAACAGGAGCAGGACGGGGTGG
TGGTGGTGGTGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAG
GAGAAGAAGAACAAGAAGAAGAAGAGAGGCACCAAGGAGTAACCAGCACA
GCGCCGGCTGCAGCTGCAGATGGATTCACAGGAAAAAGAAAAGAGGAGAA
AGGGGGAGAAGGAAGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGAAGGAG
GAGGAGGAAGAGGAGGAGGAGGGAAGCGTCGCGGGGCTCGACAGCGGAAC
AGAAAACAGGACCGTGACGAGAGCGACTTAAACCATTCATCCTCTATTCC
TGGCATTCCTCCCCTTCCTCCCCCCTCGACCTCCCCCTCCCCCTCCTCCT
CCCCCCCCCTTCCCTCCCATCCCCTTCTTCCCCCCCTGCCCCCTCCGTGG
AGCAACCCATCACCCAAGGGAGTGTGTTAG

Synonyms

Publications