NO02G04130.1, NO02G04130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G04130.1
Unique NameNO02G04130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1583
Alignment locationchr2:1126722..1128367 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1126722..1128367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G04130.1 vs.
Match: EWM30351.1 (cyclin h [Nannochloropsis gaditana])

HSP 1 Score: 519.6 bits (1337), Expect = 8.400e-144
Identity = 281/399 (70.43%), Postives = 309/399 (77.44%), Query Frame = 0 
Query:    1 MFDWTQGTQSRAWLFKSAEELAELRAKAHQLAKEGIREGRGVPMPRSFASRLSTESSSSSSS---------SSSGSSGRLPPHPTTTAGVKRPRPNEE----DNKFKADDKGVPTAELEALTPGDEEALLQYFGYMIQDSCGHRSESIKRGLSVQATALTFFYRFFLSNSMLDFDPKVVLMACMFLAGKVEYDYIRLSELKDVFGEKYGRHIIEFEGSLLQGLGFCLKTYHPYNPFFGLVNGLENVNHVKKLGLTAADLSRIYAAGQETIDLLLPTDLPLLHTPARIALAVLLVCAVDLGMVEPVESYLSYCFEEEDEYASIMNEVALIRPAVEKARHDVPKTLEERKQSRMETWKEAMAGLKKAARWGTKGEGKKRKKSKGSAGGGDNGSVASMGGSG 387
            MFDWTQGTQ RAWL++SAEELA LRAKAH LAK+ I EG+ VPMP  +ASRLS +    SSS         S SG     P  P   +G+KRPRP+ E    D    A  K     EL+AL P DEEALLQYF YMIQD+CGHRSESIKRGL VQATALTFF RFFLSNSMLDFDPKVVLMAC+FLAGKVEY+YIRLSELKDVFGEKYGR IIEFEG LLQGLGFCLK YHPYNPFFGL+NGLE VNHVKKLGLT   LSR+  AGQETIDL+LPTDLPLLH PARIALAVL+ CA +  ++EPV  YLSYCFEEEDEY +IM EVALIRPAVE A+ +VPK+  ERK+SR+E W+ AM  LKKAARWG KGEGKKRKKSKG A G  NGS   +G  G
Sbjct:   16 MFDWTQGTQFRAWLYRSAEELAALRAKAHHLAKQAIHEGKAVPMPHCYASRLSPDVGKGSSSTTTEGNPSRSPSGHPSMDPTKPKLVSGIKRPRPDGEEETQDGLCLASAKDGQMRELDALAPEDEEALLQYFAYMIQDACGHRSESIKRGLHVQATALTFFKRFFLSNSMLDFDPKVVLMACVFLAGKVEYEYIRLSELKDVFGEKYGRKIIEFEGCLLQGLGFCLKAYHPYNPFFGLINGLEKVNHVKKLGLTPDSLSRLCTAGQETIDLILPTDLPLLHAPARIALAVLVTCAAECDLMEPVAEYLSYCFEEEDEYDTIMKEVALIRPAVEAAQEEVPKSPTERKESRIEVWRAAMTRLKKAARWGGKGEGKKRKKSKGGAAGECNGSATDLGKYG 414
The following BLAST results are available for this feature:
BLAST of NO02G04130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30351.18.400e-14470.43cyclin h [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G04130NO02G04130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G04130.1NO02G04130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G04130.1.cds1NO02G04130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G04130.1.cds2NO02G04130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G04130.1 ID=NO02G04130.1|Name=NO02G04130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1583bp
GCGTAGGACAGCAGGAAGACCTGTGTGTAGCGAGCGTGGTCGAGTAGATT
GGACTTGCATGAGGAGGGGCTGGATGATAACAACGGTTCCCAACGCCATG
CTCAATAGGGCTTGGGGCTCAGAACACATATGGCAGCCAAGTGGACACTA
GTGGACACTAGCACAGCTTCTTGTTAAGCGTCCTCCAGCCCTGATATATA
TGCTTTAAAGGAATGCAAAAATATTGTGGTTTTGGGTCGGCGGATTTGGA
CAGGGAGGTGCAACATGATGCCACTGGACTGCGGAGCATCATGAAACGAA
GCACTTCGATTCTCCTTCTCCCACGCTCAGTACCCATACATTTCCACACA
CCAGGCATCAAGAAGAAGTAGTATGTTTGACTGGACGCAAGGGACGCAAT
CACGGGCCTGGCTGTTCAAGAGCGCGGAGGAACTAGCCGAGCTTCGGGCC
AAGGCACATCAACTGGCCAAGGAAGGCATTCGGGAGGGCAGAGGCGTGCC
TATGCCTCGCAGTTTCGCCTCGCGGCTGAGCACCGAAAGCAGCAGCAGTA
GCAGCAGCAGCAGTAGCGGCAGCAGTGGCCGCCTTCCCCCTCACCCCACC
ACGACGGCAGGTGTCAAGCGCCCTCGCCCGAACGAAGAGGATAATAAATT
TAAAGCTGATGACAAAGGAGTGCCGACCGCAGAGCTGGAAGCATTGACTC
CCGGAGACGAGGAAGCCTTACTGCAGTATTTTGGGTACATGATTCAAGAC
TCATGCGGGCACCGTTCCGAGAGCATCAAGCGGGGATTGAGCGTCCAAGC
GACTGCCTTGACTTTTTTCTATCGCTTCTTCCTCAGTAATTCCATGCTGG
ATTTTGACCCAAAGGTGGTGCTGATGGCGTGCATGTTCTTGGCGGGCAAG
GTGGAATATGATTATATACGACTGAGTGAGCTCAAGGACGTGTTTGGGGA
GAAATACGGACGGCACATAATTGAGTTCGAAGGCAGTTTATTACAAGGCC
TGGGGTTTTGCCTGAAGACCTATCACCCATACAATCCCTTTTTTGGATTG
GTCAATGGTTTGGAGAATGTCAACCACGTCAAAAAGCTCGGGCTGACGGC
CGCGGACTTGAGTCGTATATATGCTGCGGGCCAAGAAACGATCGATCTCC
TCTTGCCAACCGACTTGCCGTTGCTGCATACACCCGCACGTATTGCCTTG
GCGGTATTGTTGGTGTGTGCGGTGGATCTGGGAATGGTTGAGCCGGTTGA
AAGTTACTTATCTTATTGCTTTGAAGAGGAGGATGAGTACGCGAGTATTA
TGAACGAGGTCGCGCTTATTCGTCCTGCTGTAGAGAAGGCTCGACATGAC
GTGCCCAAAACTTTGGAGGAACGGAAGCAGAGTCGGATGGAGACGTGGAA
GGAGGCGATGGCAGGCTTGAAAAAAGCGGCACGGTGGGGGACGAAGGGGG
AAGGGAAGAAGCGGAAAAAAAGTAAAGGCAGTGCAGGAGGAGGAGACAAT
GGGTCGGTTGCCAGTATGGGGGGTAGTGGACCAGAAGAGGTTGCGGAAGA
TGGTTGAAAAAGTACTGAAATAACGAAACAGCT
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protein sequence of NO02G04130.1

>NO02G04130.1-protein ID=NO02G04130.1-protein|Name=NO02G04130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MFDWTQGTQSRAWLFKSAEELAELRAKAHQLAKEGIREGRGVPMPRSFAS
RLSTESSSSSSSSSSGSSGRLPPHPTTTAGVKRPRPNEEDNKFKADDKGV
PTAELEALTPGDEEALLQYFGYMIQDSCGHRSESIKRGLSVQATALTFFY
RFFLSNSMLDFDPKVVLMACMFLAGKVEYDYIRLSELKDVFGEKYGRHII
EFEGSLLQGLGFCLKTYHPYNPFFGLVNGLENVNHVKKLGLTAADLSRIY
AAGQETIDLLLPTDLPLLHTPARIALAVLLVCAVDLGMVEPVESYLSYCF
EEEDEYASIMNEVALIRPAVEKARHDVPKTLEERKQSRMETWKEAMAGLK
KAARWGTKGEGKKRKKSKGSAGGGDNGSVASMGGSGPEEVAEDG*
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mRNA from alignment at chr2:1126722..1128367+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04130.1 ID=NO02G04130.1|Name=NO02G04130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1646bp|location=Sequence derived from alignment at chr2:1126722..1128367+ (Nannochloropsis oceanica)
GCGTAGGACAGCAGGAAGACCTGTGTGTAGCGAGCGTGGTCGAGTAGATT
GGACTTGCATGAGGAGGGGCTGGATGATAACAACGGTTCCCAACGCCATG
CTCAATAGGGCTTGGGGCTCAGAACACATATGGCAGCCAAGTGGACACTA
GTGGACACTAGCACAGCTTCTTGTTAAGCGTCCTCCAGCCCTGATATATA
TGCTTTAAAGGAATGCAAAAATATTGTGGTTTTGGGTCGGCGGATTTGGA
CAGGGAGGTGCAACATGATGCCACTGGACTGCGGAGCATCATGAAACGAA
GCACTTCGATTCTCCTTCTCCCACGCTCAGTACCCATACATTTCCACACA
CCAGGCATCAAGAAGAAGTAGTATGTTTGACTGGACGCAAGGGACGCAAT
CACGGGCCTGGCTGTTCAAGAGCGCGGAGGAACTAGGTACGTGTTGCTCC
CCATTTCCAATTCCCATCCTCCCTTCCTTACCCCGTTTGCTACATACAGC
CGAGCTTCGGGCCAAGGCACATCAACTGGCCAAGGAAGGCATTCGGGAGG
GCAGAGGCGTGCCTATGCCTCGCAGTTTCGCCTCGCGGCTGAGCACCGAA
AGCAGCAGCAGTAGCAGCAGCAGCAGTAGCGGCAGCAGTGGCCGCCTTCC
CCCTCACCCCACCACGACGGCAGGTGTCAAGCGCCCTCGCCCGAACGAAG
AGGATAATAAATTTAAAGCTGATGACAAAGGAGTGCCGACCGCAGAGCTG
GAAGCATTGACTCCCGGAGACGAGGAAGCCTTACTGCAGTATTTTGGGTA
CATGATTCAAGACTCATGCGGGCACCGTTCCGAGAGCATCAAGCGGGGAT
TGAGCGTCCAAGCGACTGCCTTGACTTTTTTCTATCGCTTCTTCCTCAGT
AATTCCATGCTGGATTTTGACCCAAAGGTGGTGCTGATGGCGTGCATGTT
CTTGGCGGGCAAGGTGGAATATGATTATATACGACTGAGTGAGCTCAAGG
ACGTGTTTGGGGAGAAATACGGACGGCACATAATTGAGTTCGAAGGCAGT
TTATTACAAGGCCTGGGGTTTTGCCTGAAGACCTATCACCCATACAATCC
CTTTTTTGGATTGGTCAATGGTTTGGAGAATGTCAACCACGTCAAAAAGC
TCGGGCTGACGGCCGCGGACTTGAGTCGTATATATGCTGCGGGCCAAGAA
ACGATCGATCTCCTCTTGCCAACCGACTTGCCGTTGCTGCATACACCCGC
ACGTATTGCCTTGGCGGTATTGTTGGTGTGTGCGGTGGATCTGGGAATGG
TTGAGCCGGTTGAAAGTTACTTATCTTATTGCTTTGAAGAGGAGGATGAG
TACGCGAGTATTATGAACGAGGTCGCGCTTATTCGTCCTGCTGTAGAGAA
GGCTCGACATGACGTGCCCAAAACTTTGGAGGAACGGAAGCAGAGTCGGA
TGGAGACGTGGAAGGAGGCGATGGCAGGCTTGAAAAAAGCGGCACGGTGG
GGGACGAAGGGGGAAGGGAAGAAGCGGAAAAAAAGTAAAGGCAGTGCAGG
AGGAGGAGACAATGGGTCGGTTGCCAGTATGGGGGGTAGTGGACCAGAAG
AGGTTGCGGAAGATGGTTGAAAAAGTACTGAAATAACGAAACAGCT
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Coding sequence (CDS) from alignment at chr2:1126722..1128367+

>NO02G04130.1 ID=NO02G04130.1|Name=NO02G04130.1|organism=Nannochloropsis oceanica|type=CDS|length=1185bp|location=Sequence derived from alignment at chr2:1126722..1128367+ (Nannochloropsis oceanica)
ATGTTTGACTGGACGCAAGGGACGCAATCACGGGCCTGGCTGTTCAAGAG
CGCGGAGGAACTAGCCGAGCTTCGGGCCAAGGCACATCAACTGGCCAAGG
AAGGCATTCGGGAGGGCAGAGGCGTGCCTATGCCTCGCAGTTTCGCCTCG
CGGCTGAGCACCGAAAGCAGCAGCAGTAGCAGCAGCAGCAGTAGCGGCAG
CAGTGGCCGCCTTCCCCCTCACCCCACCACGACGGCAGGTGTCAAGCGCC
CTCGCCCGAACGAAGAGGATAATAAATTTAAAGCTGATGACAAAGGAGTG
CCGACCGCAGAGCTGGAAGCATTGACTCCCGGAGACGAGGAAGCCTTACT
GCAGTATTTTGGGTACATGATTCAAGACTCATGCGGGCACCGTTCCGAGA
GCATCAAGCGGGGATTGAGCGTCCAAGCGACTGCCTTGACTTTTTTCTAT
CGCTTCTTCCTCAGTAATTCCATGCTGGATTTTGACCCAAAGGTGGTGCT
GATGGCGTGCATGTTCTTGGCGGGCAAGGTGGAATATGATTATATACGAC
TGAGTGAGCTCAAGGACGTGTTTGGGGAGAAATACGGACGGCACATAATT
GAGTTCGAAGGCAGTTTATTACAAGGCCTGGGGTTTTGCCTGAAGACCTA
TCACCCATACAATCCCTTTTTTGGATTGGTCAATGGTTTGGAGAATGTCA
ACCACGTCAAAAAGCTCGGGCTGACGGCCGCGGACTTGAGTCGTATATAT
GCTGCGGGCCAAGAAACGATCGATCTCCTCTTGCCAACCGACTTGCCGTT
GCTGCATACACCCGCACGTATTGCCTTGGCGGTATTGTTGGTGTGTGCGG
TGGATCTGGGAATGGTTGAGCCGGTTGAAAGTTACTTATCTTATTGCTTT
GAAGAGGAGGATGAGTACGCGAGTATTATGAACGAGGTCGCGCTTATTCG
TCCTGCTGTAGAGAAGGCTCGACATGACGTGCCCAAAACTTTGGAGGAAC
GGAAGCAGAGTCGGATGGAGACGTGGAAGGAGGCGATGGCAGGCTTGAAA
AAAGCGGCACGGTGGGGGACGAAGGGGGAAGGGAAGAAGCGGAAAAAAAG
TAAAGGCAGTGCAGGAGGAGGAGACAATGGGTCGGTTGCCAGTATGGGGG
GTAGTGGACCAGAAGAGGTTGCGGAAGATGGTTGA
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Synonyms
Publications