NO02G03940.1, NO02G03940.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G03940.1
Unique Name	NO02G03940.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1001
Alignment location	chr2:1078520..1079520 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:1078520..1079520 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO02G03940.1 vs.

BLAST of NO02G03940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G03940	NO02G03940	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G03940.1	NO02G03940.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G03940.1.cds1	NO02G03940.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:1078520..1079520-
coding sequence from alignment at chr2:1078520..1079520-

mRNA sequence

>NO02G03940.1 ID=NO02G03940.1|Name=NO02G03940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1001bp
ATGCAAGTGGAGAACGGAGGGAATCCTGGCCATCAGGGCTTTGCAATCGC
ACCAGTCTCCAGCATCAAGCGCCATTTTATGGTGGTCGACAACAAGACTT
CTTATCTTATACTGAAGGTGGTGAGAGGTACGCCGGAAGAGATGGACGAG
GCAGAGTCGGAGGCAGAATGTCCCGCCTGGTTAAAGCGTCTGGCAGGGAT
GAGTGAGAGTGATCTTCGCGCGGATGTTGTTCTTGTAAAGACTGCATGGG
ACGAGACCTTCAGAGTCAGAGACCTTCGGAATCGGGGTGAGTTTAATGAC
CGGATTGCGACGGATGGTTTCTCGTTGTCGGTCTATTTAAGCGTGGCGAA
AGAGAAACGGGAGAAGGAGCGACAACAGAAGTGGGAATACCCGCAACAGG
ATGGAGACCCACGCATTGTCGCGATCGATCCCGGTGGTGTCAACCTGGTT
ACGGCACTGGACTCTCGGACCGGTAAAATTAAAAAGTTGACGCGGAATGA
GTATGATGAGAAGGGGTGGATCAACGAGTGCAACGGGAAGTTCAAATCTT
GAGAGATTCCACTCCGCGACATAATCAATGCTTTGTCGAAGACTTCGATG
AAGATCTGTTATCCTGATCTTCGAAGTGCACATCGGGAGCTGATTAGACA
GCATTGCCAATGAGTGTGGGATGCTAGGTGTGAGGAGAAGTTGGCGCGCG
AGAGGACTGTATAAGCGGGGAAGCTTTGATAGTTTCTTCGCGGGTTTGAA
GAGGCCAGGATAAACAAAACAAGTCCGTCATTGCACATGGGGTAGCAACC
TTGCATCACAGCGGCAAGGGAGAGATTCCCGTCAAGAGGGTGATCAAGGC
GTACGAAAAGCATTACAAGACAGTGCGTGTTCCCGAGTACCTGACAACAA
AGGTTTATCATGTTTGTGGACACACCTCGATCCAATCGCGAGAAAGGCAG
GAGAAGAAGGAGCAGGAGAGGTAGGGGAAGGGCGAGGAGGAGAAGGAGGA
G

protein sequence of NO02G03940.1

>NO02G03940.1-protein ID=NO02G03940.1-protein|Name=NO02G03940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MQVENGGNPGHQGFAIAPVSSIKRHFMVVDNKTSYLILKVVRGTPEEMDE
AESEAECPAWLKRLAGMSESDLRADVVLVKTAWDETFRVRDLRNRGEFND
RIATDGFSLSVYLSVAKEKREKERQQKWEYPQQDGDPRIVAIDPGGVNLV
TALDSRTGKIKKLTRNEYDEKGWINECNGKFKS*

mRNA from alignment at chr2:1078520..1079520-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G03940.1 ID=NO02G03940.1|Name=NO02G03940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1001bp|location=Sequence derived from alignment at chr2:1078520..1079520- (Nannochloropsis oceanica)
ATGCAAGTGGAGAACGGAGGGAATCCTGGCCATCAGGGCTTTGCAATCGC
ACCAGTCTCCAGCATCAAGCGCCATTTTATGGTGGTCGACAACAAGACTT
CTTATCTTATACTGAAGGTGGTGAGAGGTACGCCGGAAGAGATGGACGAG
GCAGAGTCGGAGGCAGAATGTCCCGCCTGGTTAAAGCGTCTGGCAGGGAT
GAGTGAGAGTGATCTTCGCGCGGATGTTGTTCTTGTAAAGACTGCATGGG
ACGAGACCTTCAGAGTCAGAGACCTTCGGAATCGGGGTGAGTTTAATGAC
CGGATTGCGACGGATGGTTTCTCGTTGTCGGTCTATTTAAGCGTGGCGAA
AGAGAAACGGGAGAAGGAGCGACAACAGAAGTGGGAATACCCGCAACAGG
ATGGAGACCCACGCATTGTCGCGATCGATCCCGGTGGTGTCAACCTGGTT
ACGGCACTGGACTCTCGGACCGGTAAAATTAAAAAGTTGACGCGGAATGA
GTATGATGAGAAGGGGTGGATCAACGAGTGCAACGGGAAGTTCAAATCTT
GAGAGATTCCACTCCGCGACATAATCAATGCTTTGTCGAAGACTTCGATG
AAGATCTGTTATCCTGATCTTCGAAGTGCACATCGGGAGCTGATTAGACA
GCATTGCCAATGAGTGTGGGATGCTAGGTGTGAGGAGAAGTTGGCGCGCG
AGAGGACTGTATAAGCGGGGAAGCTTTGATAGTTTCTTCGCGGGTTTGAA
GAGGCCAGGATAAACAAAACAAGTCCGTCATTGCACATGGGGTAGCAACC
TTGCATCACAGCGGCAAGGGAGAGATTCCCGTCAAGAGGGTGATCAAGGC
GTACGAAAAGCATTACAAGACAGTGCGTGTTCCCGAGTACCTGACAACAA
AGGTTTATCATGTTTGTGGACACACCTCGATCCAATCGCGAGAAAGGCAG
GAGAAGAAGGAGCAGGAGAGGTAGGGGAAGGGCGAGGAGGAGAAGGAGGA
G

Coding sequence (CDS) from alignment at chr2:1078520..1079520-

>NO02G03940.1 ID=NO02G03940.1|Name=NO02G03940.1|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at chr2:1078520..1079520- (Nannochloropsis oceanica)
ATGCAAGTGGAGAACGGAGGGAATCCTGGCCATCAGGGCTTTGCAATCGC
ACCAGTCTCCAGCATCAAGCGCCATTTTATGGTGGTCGACAACAAGACTT
CTTATCTTATACTGAAGGTGGTGAGAGGTACGCCGGAAGAGATGGACGAG
GCAGAGTCGGAGGCAGAATGTCCCGCCTGGTTAAAGCGTCTGGCAGGGAT
GAGTGAGAGTGATCTTCGCGCGGATGTTGTTCTTGTAAAGACTGCATGGG
ACGAGACCTTCAGAGTCAGAGACCTTCGGAATCGGGGTGAGTTTAATGAC
CGGATTGCGACGGATGGTTTCTCGTTGTCGGTCTATTTAAGCGTGGCGAA
AGAGAAACGGGAGAAGGAGCGACAACAGAAGTGGGAATACCCGCAACAGG
ATGGAGACCCACGCATTGTCGCGATCGATCCCGGTGGTGTCAACCTGGTT
ACGGCACTGGACTCTCGGACCGGTAAAATTAAAAAGTTGACGCGGAATGA
GTATGATGAGAAGGGGTGGATCAACGAGTGCAACGGGAAGTTCAAATCTT
GA

Synonyms

Publications