NO02G03710.1, NO02G03710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03710.1
Unique NameNO02G03710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2364
Alignment locationchr2:999782..1002145 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:999782..1002145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03710.1 vs.
Match: EWM30221.1 (p21-activated protein kinase [Nannochloropsis gaditana])

HSP 1 Score: 932.2 bits (2408), Expect = 7.700e-268
Identity = 470/553 (84.99%), Postives = 497/553 (89.87%), Query Frame = 0 
Query:   15 KEMMGSLSLEEATTPPPNNRSGID-------TSAGAPAADAVSTPSTATTVDMTNSESFSLSLSGRAGGGEQL---VRGASVSKPMQVKHHIHVSFDPASGAFKGLPPEWGRHLPDGVSKDETKVTATDRHVAPPKPTAEVKKTLNPLRKFSWWGGPGKSSSDKNAPLAGTVIGAPFNVQHTTHVRPDLTSSTGFSGLPPAWRAVLKVSGITKQEAVDHPQAVLAALNFHMQGPTHTRGPLPTRAAVEQAMAKALRIVQDDPRQYFTDLKRLGQGASGTVYAATDRRTGERRALKIAPVSELADLTNEIGLQSMSDHPNIVRIYEAFVTTSEVCIVMELMMGGSLTDVLGKQVVDFKEPHIAYVAKAVLSALSYMHGSYRMHRDIKSDNVLVDKEGQVKIADFGFAIALTKETSKRHSVVGTPYWMAPELIRGTDYDSKVDIWSCGITCIEMAEGEPPHLHEPPLRALLMISISGSPTLKDPSRWSSQFLHFLAQTTSIDAEARPTAEQLLNHPFITMASTQEEYGQFVRGQLEARRRRKQQQAQQIQAAHHK 558
            +EMMG+LSLEE  +PPP+N  G+        T  G PAAD V TP T  T  +T+++SF LS S     G++     RG SVSKPMQVKHHIHVSFDP SGAFKGLPPEWG+HLP GVSK+E  VTATDRHVAPPKPTAEVKKTLNPLRKF+WW    K   D+N PLAGTVIGAPFNVQHTTHVRPD TSSTGFSGLPPAWRAVLKVSGITKQEAVDHPQAVLAALNFHMQGPTHTRGPLP+RAAVEQAMAKALRIV+DDPRQYF+DLKRLGQGASGTVYAATDRRTGERRALKIAPVSELADLTNEIGLQSMSDHPN+VRIYEAFVTTSEVCIVMELM+GGSLTDVLGK VVDFKEPHIAYVAKAVLSAL+YMH SYRMHRDIKSDNVLVDKEGQVKIADFGFAIALTKETSKRHSVVGTPYWMAPELIRGTDYDSKVD+WS GITCIEMAEGEPPHLHEPPLRALLMISISGSP LKDPSRWSSQFLHFLAQ+TS+DAEARPTAEQLLNHPF+TMASTQEEYG FVR QLEARRRR+QQQA Q QAAH+K
Sbjct:   26 EEMMGTLSLEEIPSPPPDNNGGVPHAGSDSLTGEGEPAADTVGTPKTVITAPITSTDSFRLSASESELAGDRSNEPARGTSVSKPMQVKHHIHVSFDPTSGAFKGLPPEWGKHLPVGVSKEEANVTATDRHVAPPKPTAEVKKTLNPLRKFTWWSSGSKGGGDRNPPLAGTVIGAPFNVQHTTHVRPDPTSSTGFSGLPPAWRAVLKVSGITKQEAVDHPQAVLAALNFHMQGPTHTRGPLPSRAAVEQAMAKALRIVKDDPRQYFSDLKRLGQGASGTVYAATDRRTGERRALKIAPVSELADLTNEIGLQSMSDHPNVVRIYEAFVTTSEVCIVMELMLGGSLTDVLGKHVVDFKEPHIAYVAKAVLSALAYMHSSYRMHRDIKSDNVLVDKEGQVKIADFGFAIALTKETSKRHSVVGTPYWMAPELIRGTDYDSKVDVWSLGITCIEMAEGEPPHLHEPPLRALLMISISGSPALKDPSRWSSQFLHFLAQSTSVDAEARPTAEQLLNHPFLTMASTQEEYGAFVRAQLEARRRRRQQQA-QAQAAHNK 577
The following BLAST results are available for this feature:
BLAST of NO02G03710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30221.17.700e-26884.99p21-activated protein kinase [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03710NO02G03710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03710.1NO02G03710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03710.1.cds1NO02G03710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03710.1 ID=NO02G03710.1|Name=NO02G03710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2364bp
ACAGAGGCTCTTTCATCTGCTCAAGGTCGGGGAGCACGAGAGTCGTTCCG
GCACACCTCACAACCTTGCGCCCGCCGCTTGTTGTTCTGTGAAAGAAACG
GAAGGATCGACCCTGGCCCAACCCGCCCCTGCCCTCTCCCCACGCACCAC
CGCCGCAACACCACCACTTTCGTCGACGACCATGTCTACAGGAACTACAC
AGCAGACCAGTGGTTGTGGCGTGAAGGAGATGATGGGCTCTTTGTCTCTA
GAGGAAGCCACCACGCCTCCCCCCAACAACAGGAGCGGGATCGACACCTC
GGCGGGTGCACCTGCCGCGGACGCCGTATCCACGCCCAGCACAGCCACCA
CGGTCGACATGACCAATTCTGAGTCCTTCAGTCTCTCTCTCTCTGGGAGA
GCAGGGGGTGGTGAACAGCTTGTCCGTGGCGCTTCGGTATCTAAGCCGAT
GCAGGTCAAGCACCACATCCACGTCTCCTTCGATCCTGCCAGCGGGGCCT
TCAAGGGCCTGCCCCCCGAGTGGGGCAGACATTTACCTGACGGCGTTTCA
AAAGATGAGACCAAGGTGACGGCGACGGATCGGCATGTGGCCCCGCCCAA
ACCCACGGCCGAGGTAAAGAAGACCTTAAACCCTCTAAGGAAATTTAGTT
GGTGGGGCGGACCAGGCAAGAGCAGCAGTGACAAGAATGCCCCATTGGCC
GGAACCGTGATTGGCGCACCATTCAATGTACAACACACCACGCACGTTCG
CCCGGATTTGACCTCGTCCACGGGGTTTAGTGGCCTCCCTCCTGCGTGGC
GCGCCGTACTTAAGGTCTCAGGTATCACAAAGCAGGAAGCGGTCGATCAC
CCTCAAGCTGTGCTGGCTGCTTTGAACTTCCACATGCAAGGCCCCACGCA
TACTAGAGGGCCACTCCCAACGCGGGCTGCGGTGGAGCAGGCAATGGCTA
AGGCGCTGCGGATAGTCCAGGATGACCCTAGGCAGTACTTCACTGATTTG
AAGCGGTTGGGGCAGGGGGCGAGTGGGACAGTCTATGCCGCTACGGATCG
AAGAACGGGAGAGAGGAGGGCGTTGAAAATTGCACCAGTGAGCGAATTAG
CTGATTTGACGAACGAAATTGGGTTGCAGAGTATGAGTGATCACCCGAAT
ATTGTGAGAATTTATGAGGCGTTTGTAACAACGTCGGAGGTGTGCATTGT
CATGGAGTTGATGATGGGGGGGAGTTTGACCGATGTCCTTGGGAAGCAAG
TCGTTGATTTCAAGGAGCCACACATTGCATATGTGGCGAAGGCGGTGTTG
TCTGCCTTATCGTACATGCACGGGTCTTATCGAATGCATCGGGATATAAA
ATCCGATAACGTGTTGGTAGATAAGGAGGGACAGGTTAAGATTGCAGATT
TCGGGTTTGCGATCGCCTTGACCAAGGAAACGAGTAAGAGGCATTCAGTG
GTGGGGACGCCGTACTGGATGGCACCAGAGCTAATTCGGGGGACGGATTA
TGATTCGAAGGTGGATATCTGGTCGTGTGGGATAACCTGTATTGAGATGG
CGGAAGGCGAACCTCCCCATTTGCATGAACCCCCCCTCCGTGCCTTGCTC
ATGATCTCGATTTCAGGCTCCCCGACGTTGAAAGACCCCTCGCGATGGTC
CTCGCAGTTTTTGCATTTTCTGGCCCAGACCACATCAATAGATGCGGAAG
CCCGCCCGACGGCCGAGCAGTTGCTAAACCATCCGTTTATTACCATGGCA
TCCACTCAGGAGGAGTATGGGCAGTTTGTCCGAGGACAGCTTGAGGCACG
ACGACGACGAAAACAACAGCAGGCTCAGCAAATTCAAGCCGCGCACCATA
AGAAATAATCCCAGGGAAGGAGGTAAGGAGGATTGGAGGGGAGTTGTATT
CTTTTGGTGGTTGTGGTCACGAAGGGTTGTGTGTGTTGGTGTGTGATGTT
TTGCTCCACACGTACCGTATGAACATACGCTCGCATTTGGCATGAGGGAA
GAAGGCTGTCTGATCAGCACCAGAGGGGTTACTAGGTGAGAAGAAGGACT
GTGGGACTGTGGGTGTATGAATGCATGGAGGAAGGAAGGGAGGGAAATGC
CGCTTGCCGTCAAGGTGTAAGAGCGTCGTCAAGGCAGGCGGGGCGGGGAG
GGAAACGAGTTGCTTTTATGTGCAAACAAATATTTAAAGCTTGTTCACGA
CAAAAAGAAGAAGGAAAGCGAAGATGATGAAAAAGACGACGAGGAGAAGA
AAGAAAGAGGAAGAGAACAACGAAGAAAAGGAGAAGGAGAAGAGAAGACG
ACAAAGAAGAGGGAGGTCAAGAGCGATTAGAAGAGGAAAATCAATTCCAT
CACGAAAGTCTCAT
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protein sequence of NO02G03710.1

>NO02G03710.1-protein ID=NO02G03710.1-protein|Name=NO02G03710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=559bp
MSTGTTQQTSGCGVKEMMGSLSLEEATTPPPNNRSGIDTSAGAPAADAVS
TPSTATTVDMTNSESFSLSLSGRAGGGEQLVRGASVSKPMQVKHHIHVSF
DPASGAFKGLPPEWGRHLPDGVSKDETKVTATDRHVAPPKPTAEVKKTLN
PLRKFSWWGGPGKSSSDKNAPLAGTVIGAPFNVQHTTHVRPDLTSSTGFS
GLPPAWRAVLKVSGITKQEAVDHPQAVLAALNFHMQGPTHTRGPLPTRAA
VEQAMAKALRIVQDDPRQYFTDLKRLGQGASGTVYAATDRRTGERRALKI
APVSELADLTNEIGLQSMSDHPNIVRIYEAFVTTSEVCIVMELMMGGSLT
DVLGKQVVDFKEPHIAYVAKAVLSALSYMHGSYRMHRDIKSDNVLVDKEG
QVKIADFGFAIALTKETSKRHSVVGTPYWMAPELIRGTDYDSKVDIWSCG
ITCIEMAEGEPPHLHEPPLRALLMISISGSPTLKDPSRWSSQFLHFLAQT
TSIDAEARPTAEQLLNHPFITMASTQEEYGQFVRGQLEARRRRKQQQAQQ
IQAAHHKK*
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mRNA from alignment at chr2:999782..1002145+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03710.1 ID=NO02G03710.1|Name=NO02G03710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2364bp|location=Sequence derived from alignment at chr2:999782..1002145+ (Nannochloropsis oceanica)
ACAGAGGCTCTTTCATCTGCTCAAGGTCGGGGAGCACGAGAGTCGTTCCG
GCACACCTCACAACCTTGCGCCCGCCGCTTGTTGTTCTGTGAAAGAAACG
GAAGGATCGACCCTGGCCCAACCCGCCCCTGCCCTCTCCCCACGCACCAC
CGCCGCAACACCACCACTTTCGTCGACGACCATGTCTACAGGAACTACAC
AGCAGACCAGTGGTTGTGGCGTGAAGGAGATGATGGGCTCTTTGTCTCTA
GAGGAAGCCACCACGCCTCCCCCCAACAACAGGAGCGGGATCGACACCTC
GGCGGGTGCACCTGCCGCGGACGCCGTATCCACGCCCAGCACAGCCACCA
CGGTCGACATGACCAATTCTGAGTCCTTCAGTCTCTCTCTCTCTGGGAGA
GCAGGGGGTGGTGAACAGCTTGTCCGTGGCGCTTCGGTATCTAAGCCGAT
GCAGGTCAAGCACCACATCCACGTCTCCTTCGATCCTGCCAGCGGGGCCT
TCAAGGGCCTGCCCCCCGAGTGGGGCAGACATTTACCTGACGGCGTTTCA
AAAGATGAGACCAAGGTGACGGCGACGGATCGGCATGTGGCCCCGCCCAA
ACCCACGGCCGAGGTAAAGAAGACCTTAAACCCTCTAAGGAAATTTAGTT
GGTGGGGCGGACCAGGCAAGAGCAGCAGTGACAAGAATGCCCCATTGGCC
GGAACCGTGATTGGCGCACCATTCAATGTACAACACACCACGCACGTTCG
CCCGGATTTGACCTCGTCCACGGGGTTTAGTGGCCTCCCTCCTGCGTGGC
GCGCCGTACTTAAGGTCTCAGGTATCACAAAGCAGGAAGCGGTCGATCAC
CCTCAAGCTGTGCTGGCTGCTTTGAACTTCCACATGCAAGGCCCCACGCA
TACTAGAGGGCCACTCCCAACGCGGGCTGCGGTGGAGCAGGCAATGGCTA
AGGCGCTGCGGATAGTCCAGGATGACCCTAGGCAGTACTTCACTGATTTG
AAGCGGTTGGGGCAGGGGGCGAGTGGGACAGTCTATGCCGCTACGGATCG
AAGAACGGGAGAGAGGAGGGCGTTGAAAATTGCACCAGTGAGCGAATTAG
CTGATTTGACGAACGAAATTGGGTTGCAGAGTATGAGTGATCACCCGAAT
ATTGTGAGAATTTATGAGGCGTTTGTAACAACGTCGGAGGTGTGCATTGT
CATGGAGTTGATGATGGGGGGGAGTTTGACCGATGTCCTTGGGAAGCAAG
TCGTTGATTTCAAGGAGCCACACATTGCATATGTGGCGAAGGCGGTGTTG
TCTGCCTTATCGTACATGCACGGGTCTTATCGAATGCATCGGGATATAAA
ATCCGATAACGTGTTGGTAGATAAGGAGGGACAGGTTAAGATTGCAGATT
TCGGGTTTGCGATCGCCTTGACCAAGGAAACGAGTAAGAGGCATTCAGTG
GTGGGGACGCCGTACTGGATGGCACCAGAGCTAATTCGGGGGACGGATTA
TGATTCGAAGGTGGATATCTGGTCGTGTGGGATAACCTGTATTGAGATGG
CGGAAGGCGAACCTCCCCATTTGCATGAACCCCCCCTCCGTGCCTTGCTC
ATGATCTCGATTTCAGGCTCCCCGACGTTGAAAGACCCCTCGCGATGGTC
CTCGCAGTTTTTGCATTTTCTGGCCCAGACCACATCAATAGATGCGGAAG
CCCGCCCGACGGCCGAGCAGTTGCTAAACCATCCGTTTATTACCATGGCA
TCCACTCAGGAGGAGTATGGGCAGTTTGTCCGAGGACAGCTTGAGGCACG
ACGACGACGAAAACAACAGCAGGCTCAGCAAATTCAAGCCGCGCACCATA
AGAAATAATCCCAGGGAAGGAGGTAAGGAGGATTGGAGGGGAGTTGTATT
CTTTTGGTGGTTGTGGTCACGAAGGGTTGTGTGTGTTGGTGTGTGATGTT
TTGCTCCACACGTACCGTATGAACATACGCTCGCATTTGGCATGAGGGAA
GAAGGCTGTCTGATCAGCACCAGAGGGGTTACTAGGTGAGAAGAAGGACT
GTGGGACTGTGGGTGTATGAATGCATGGAGGAAGGAAGGGAGGGAAATGC
CGCTTGCCGTCAAGGTGTAAGAGCGTCGTCAAGGCAGGCGGGGCGGGGAG
GGAAACGAGTTGCTTTTATGTGCAAACAAATATTTAAAGCTTGTTCACGA
CAAAAAGAAGAAGGAAAGCGAAGATGATGAAAAAGACGACGAGGAGAAGA
AAGAAAGAGGAAGAGAACAACGAAGAAAAGGAGAAGGAGAAGAGAAGACG
ACAAAGAAGAGGGAGGTCAAGAGCGATTAGAAGAGGAAAATCAATTCCAT
CACGAAAGTCTCAT
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Coding sequence (CDS) from alignment at chr2:999782..1002145+

>NO02G03710.1 ID=NO02G03710.1|Name=NO02G03710.1|organism=Nannochloropsis oceanica|type=CDS|length=1677bp|location=Sequence derived from alignment at chr2:999782..1002145+ (Nannochloropsis oceanica)
ATGTCTACAGGAACTACACAGCAGACCAGTGGTTGTGGCGTGAAGGAGAT
GATGGGCTCTTTGTCTCTAGAGGAAGCCACCACGCCTCCCCCCAACAACA
GGAGCGGGATCGACACCTCGGCGGGTGCACCTGCCGCGGACGCCGTATCC
ACGCCCAGCACAGCCACCACGGTCGACATGACCAATTCTGAGTCCTTCAG
TCTCTCTCTCTCTGGGAGAGCAGGGGGTGGTGAACAGCTTGTCCGTGGCG
CTTCGGTATCTAAGCCGATGCAGGTCAAGCACCACATCCACGTCTCCTTC
GATCCTGCCAGCGGGGCCTTCAAGGGCCTGCCCCCCGAGTGGGGCAGACA
TTTACCTGACGGCGTTTCAAAAGATGAGACCAAGGTGACGGCGACGGATC
GGCATGTGGCCCCGCCCAAACCCACGGCCGAGGTAAAGAAGACCTTAAAC
CCTCTAAGGAAATTTAGTTGGTGGGGCGGACCAGGCAAGAGCAGCAGTGA
CAAGAATGCCCCATTGGCCGGAACCGTGATTGGCGCACCATTCAATGTAC
AACACACCACGCACGTTCGCCCGGATTTGACCTCGTCCACGGGGTTTAGT
GGCCTCCCTCCTGCGTGGCGCGCCGTACTTAAGGTCTCAGGTATCACAAA
GCAGGAAGCGGTCGATCACCCTCAAGCTGTGCTGGCTGCTTTGAACTTCC
ACATGCAAGGCCCCACGCATACTAGAGGGCCACTCCCAACGCGGGCTGCG
GTGGAGCAGGCAATGGCTAAGGCGCTGCGGATAGTCCAGGATGACCCTAG
GCAGTACTTCACTGATTTGAAGCGGTTGGGGCAGGGGGCGAGTGGGACAG
TCTATGCCGCTACGGATCGAAGAACGGGAGAGAGGAGGGCGTTGAAAATT
GCACCAGTGAGCGAATTAGCTGATTTGACGAACGAAATTGGGTTGCAGAG
TATGAGTGATCACCCGAATATTGTGAGAATTTATGAGGCGTTTGTAACAA
CGTCGGAGGTGTGCATTGTCATGGAGTTGATGATGGGGGGGAGTTTGACC
GATGTCCTTGGGAAGCAAGTCGTTGATTTCAAGGAGCCACACATTGCATA
TGTGGCGAAGGCGGTGTTGTCTGCCTTATCGTACATGCACGGGTCTTATC
GAATGCATCGGGATATAAAATCCGATAACGTGTTGGTAGATAAGGAGGGA
CAGGTTAAGATTGCAGATTTCGGGTTTGCGATCGCCTTGACCAAGGAAAC
GAGTAAGAGGCATTCAGTGGTGGGGACGCCGTACTGGATGGCACCAGAGC
TAATTCGGGGGACGGATTATGATTCGAAGGTGGATATCTGGTCGTGTGGG
ATAACCTGTATTGAGATGGCGGAAGGCGAACCTCCCCATTTGCATGAACC
CCCCCTCCGTGCCTTGCTCATGATCTCGATTTCAGGCTCCCCGACGTTGA
AAGACCCCTCGCGATGGTCCTCGCAGTTTTTGCATTTTCTGGCCCAGACC
ACATCAATAGATGCGGAAGCCCGCCCGACGGCCGAGCAGTTGCTAAACCA
TCCGTTTATTACCATGGCATCCACTCAGGAGGAGTATGGGCAGTTTGTCC
GAGGACAGCTTGAGGCACGACGACGACGAAAACAACAGCAGGCTCAGCAA
ATTCAAGCCGCGCACCATAAGAAATAA
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Synonyms
Publications