NO02G03170.2, NO02G03170.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03170.2
Unique NameNO02G03170.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2191
Alignment locationchr2:851715..854613 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:851715..854613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G03170.2 vs.
Match: EWM30268.1 (udp-sugar transporter ust74c [Nannochloropsis gaditana])

HSP 1 Score: 466.1 bits (1198), Expect = 1.100e-127
Identity = 245/312 (78.53%), Postives = 278/312 (89.10%), Query Frame = 0 
Query:   67 MAP-VGATAWQKGGSALLYGSASLSIMVINKVVLTIYHFPSFAFLAACQFLFTTLVIFCLKVVGRVQVTAMSWEVLRVMAPLVIISLVNVLSGLGGTQKISLPMFTALRRFSILMTMLLEAYVFGTRPSVAVKLSVFLMIFGALVAALSDLTFDTVGYFMIFLSDLFTALNGVVMKRTLTACPSVNKMAVLYYNSLFGVIIMVGLLSTREEEMEAVRSFTHWNEPRFLLSFCLAAGMGSILNYSIFLCTLYNSALTTTVVGCLKNILTTYIGMIFMSDYIFSWENFVGLHISIVGSLVYSFVELQSILKGRE 378
            MAP VGA+ WQKGGSAL+YG ASLSIMV+NK+VLT Y FPSFAFLAA QFLFTT++IF L  VGR+QVTAMSWEV+RVMAPLV+ISLVNVL+GLGGTQK+SLPMFTALRRFSILMTMLLEAYVFGT PS AVK+SVF+MI GALVAA+SDL+FDTVGY MI LSDLFTALNGVVMK+TL++  +VNKMAVLYYNSLFGV++M  L++ R+EE+  VR F HW +P F+L F LA  MGS+LNYSIFLCTLYNSALTTTVVGCLKNILTTYIGM  +SDYIFSWENF+G+HISI GSLVYS+VELQSIL  +E
Sbjct:    1 MAPNVGASPWQKGGSALMYGMASLSIMVVNKIVLTSYQFPSFAFLAASQFLFTTMIIFILDRVGRLQVTAMSWEVVRVMAPLVVISLVNVLAGLGGTQKVSLPMFTALRRFSILMTMLLEAYVFGTSPSTAVKMSVFMMIIGALVAAMSDLSFDTVGYAMILLSDLFTALNGVVMKKTLSSSSTVNKMAVLYYNSLFGVVMMGLLMTLRDEELARVREFRHWQDPHFVLYFFLAGAMGSVLNYSIFLCTLYNSALTTTVVGCLKNILTTYIGMFLISDYIFSWENFLGIHISIAGSLVYSYVELQSILNNKE 312
The following BLAST results are available for this feature:
BLAST of NO02G03170.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30268.11.100e-12778.53udp-sugar transporter ust74c [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03170NO02G03170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03170.2NO02G03170.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03170.2.cds1NO02G03170.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03170.2.cds2NO02G03170.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03170.2.cds3NO02G03170.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03170.2.cds4NO02G03170.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03170.2 ID=NO02G03170.2|Name=NO02G03170.2|organism=Nannochloropsis oceanica|type=mRNA|length=2191bp
CTGCATCGGGGACATCTTTGCTGTATATGCGTAGTGAGATAGATTATCAG
TTGAGAGGGGTTCTCGAGAGAGGAGTCGGTGCGGCATGAAATGGTTTTGT
ACAAGGCACAAGGTAGCCCAGGAATTTTGTTCCTTCTCTCTATTCAAAAC
CGCCCCCATGCCTTTGGCACGCAACAGCATAACCATGGGCGGACAGCACT
CTCCTTGAATTTGCGCCAGCCGAGGGCTAAGGACTGATAAATAGACTGGT
AAAGACAGATCAAAGGGGGCGCCATGGTTTTAGCTTTCGGTGGTGTGCCC
ATCGAAGCACCGAAGCATCTCGGTCGCTCTCTGAGGGGCACCCCATGGTG
AAGGCCGACCAGATCAGGCGATCGAGCCCTGCCCTAGCTGCTGGCTTTTT
GTCCTTACTTAAAACAGCTCTCACGCGTCCCCACCCAACCCAAAAGTTAC
AGGTGCTAGGTGCGGTACCTGGATCGCCATCTCCTACTCCTATTTCTGTA
GCCTGTCTCCTACCTCTCCCGCCTCCCAACTCCACAAGCATTATGGCCCC
CGTGGGCGCGACGGCATGGCAAAAGGGCGGCTCGGCGCTACTGTACGGGA
GCGCCTCCCTCTCCATCATGGTCATCAACAAGGTCGTCCTAACAATCTAC
CACTTCCCTTCCTTCGCCTTCCTGGCCGCCTGTCAATTCCTGTTCACTAC
CCTCGTCATTTTCTGTCTGAAAGTCGTCGGACGCGTGCAAGTCACGGCCA
TGTCCTGGGAGGTTTTGCGCGTCATGGCGCCACTCGTGATCATCTCCCTC
GTCAACGTCTTGTCCGGCCTAGGTGGTACGCAAAAGATCTCCTTGCCCAT
GTTTACGGCCCTGCGTCGATTTTCCATATTGATGACGATGCTGCTTGAAG
CATATGTTTTTGGCACCAGACCGTCGGTGGCCGTGAAATTAAGTGTGTTC
CTCATGATTTTTGGGGCCCTCGTGGCGGCGCTTTCCGACTTGACGTTCGA
CACAGTGGGGTACTTCATGATTTTTTTGTCGGATTTGTTTACGGCTTTGA
ATGGGGTGGTGATGAAGAGGACGCTGACTGCTTGCCCTTCTGTCAACAAG
ATGGCAGTTCTGTACTATAACAGTCTGTTTGGCGTAATAATCATGGTGGG
GTTGCTGAGCACGCGAGAAGAAGAGATGGAGGCTGTTCGAAGCTTTACTC
ATTGGAATGAGCCCCGATTTCTGCTCTCCTTCTGCCTTGCTGCCGGCATG
GGCTCCATCCTCAACTACTCCATTTTCCTCTGCACCCTATACAATAGTGC
GCTCACCACCACTGTCGTTGGCTGTCTCAAGAACATCTTGACCACGTACA
TTGGCATGATCTTCATGAGTGACTATATCTTCTCGTGGGAGAACTTCGTG
GGCTTGCACATCTCCATTGTTGGTTCCTTGGTCTACTCGTTCGTTGAGCT
CCAGTCCATCCTCAAGGGCAGAGAGGTATGAAGTGAGGGAATGAAAGAGG
ATTGGGTATGCTGATAGTTTCCCTTTGGGAGAAATGGTTGAAGAGAGGGG
TAGGTGCGGGCCCTTTCCTGCTGAGGTGGTTTCGGTCCTCCACTACCTTT
TCCTCCTTTCACGAACCCCTTGTCATTCCACTCTTCTTTTTTCCACAGCG
AGCAGTCATGGACATGAAAAGCCGTAAGCACGCGGGAGGGCGCATTCACG
TGCCCGTGGGCGGCGGCAAGGGGGCGAGCAAGCGGGAAGCAGAGCTGGTG
CGTCTGCTCGACCAGCGGCCGCCTTCGGGTGGCGGCAACACAGGACCCGA
GGAGAAAGAAGACGCTGTTTTGGTCTAACGGCGACTTTCTCTTCTTAATG
GCCCTCCCCTTTCCACCTTTTTTTCGGTTTTCCCGTTCGATGCTTCATAT
TTGTCCTGCCCCGAACATCCAAATAGTATTTTAAAAACTCTGAACCAAAG
CGAATGGAAGACTAAAATCACAAAGAATCAGTGTGTTTTGGGGCGAGAGG
CCGTGAGAGAGGGAACAAGGACTGTAAGATGTTATGGAAGTGTACATCAG
TCAAAAATAAAAAAATAGAGGTAGACAACCCTAGATCCGCCTTCGCCCCT
CCGACCTCCTGGGATCCGAATTAGCAGACCCAATCAAAACGTCCCGCCAC
AAAGACGAAAAGAGCAGGAGAAAAAGAATAAAAGTACCATG
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protein sequence of NO02G03170.2

>NO02G03170.2-protein ID=NO02G03170.2-protein|Name=NO02G03170.2|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MVKADQIRRSSPALAAGFLSLLKTALTRPHPTQKLQVLGAVPGSPSPTPI
SVACLLPLPPPNSTSIMAPVGATAWQKGGSALLYGSASLSIMVINKVVLT
IYHFPSFAFLAACQFLFTTLVIFCLKVVGRVQVTAMSWEVLRVMAPLVII
SLVNVLSGLGGTQKISLPMFTALRRFSILMTMLLEAYVFGTRPSVAVKLS
VFLMIFGALVAALSDLTFDTVGYFMIFLSDLFTALNGVVMKRTLTACPSV
NKMAVLYYNSLFGVIIMVGLLSTREEEMEAVRSFTHWNEPRFLLSFCLAA
GMGSILNYSIFLCTLYNSALTTTVVGCLKNILTTYIGMIFMSDYIFSWEN
FVGLHISIVGSLVYSFVELQSILKGREV*
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mRNA from alignment at chr2:851715..854613+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03170.2 ID=NO02G03170.2|Name=NO02G03170.2|organism=Nannochloropsis oceanica|type=mRNA|length=2899bp|location=Sequence derived from alignment at chr2:851715..854613+ (Nannochloropsis oceanica)
CTGCATCGGGGACATCTTTGCTGTATATGCGTAGTGAGATAGATTATCAG
TTGAGAGGGGTTCTCGAGAGAGGAGTCGGTGCGGCATGAAATGGTTTTGT
ACAAGGCACAAGGTAGCCCAGGAATTTTGTTCCTTCTCTCTATTCAAAAC
CGCCCCCATGCCTTTGGCACGCAACAGCATAACCATGGGCGGACAGCACT
CTCCTTGAATTTGCGCCAGCCGAGGGCTAAGGACTGATAAATAGACTGGT
AAAGACAGATCAAAGGGGGCGCCATGGTTTTAGCTTTCGGTGGTGTGCCC
ATCGAAGCACCGAAGCATCTCGGTCGCTCTCTGAGGGGCACCCCATGGTG
AAGGCCGACCAGATCAGGCGATCGAGCCCTGCCCTAGCTGCTGGCTTTTT
GTCCTTACTTAAAACAGCTCTCACGCGTCCCCACCCAACCCAAAAGTTAC
AGGTGCTAGGTGCGGTACCTGGATCGCCATCTCCTACTCCTATTTCTGTA
GCCTGTCTCCTACCTCTCCCGCCTCCCAACTCCACAAGCATTATGGCCCC
CGTGGGCGCGACGGCATGGCAAAAGGGCGGCTCGGCGCTACTGTACGGGA
GCGCCTCCCTCTCCATCATGGTCATCAACAAGGTATGTACGTGTCTAAGA
GCTCGGATTGACGCTGGACGGGCAGCTAGGAGTGGTTGAAACGAAAAGCA
GGATGGCGTGGGCGTCGTGTGCAAGCTCCGGAGCTTCTCGTCGAAGCACG
ACGGAGCCTGCCCAAAGCCGATGCGGCTGCTCCATACTGTTGAAACGTGC
AGAGTAGAGGTCGAAGGGGGCTTCTTCGTTTTGAGCCGGCGGACAACGGC
TTCATCGAGCGCTTACGATCCACTGGCTGCGCCCGATGGGGCATGCCGCA
TCCTCTCCTGATCTTCACAAGGCTATTTACGTATGCATTGCTTTCTGTTG
AAAAGCTTGCCATAAATCTTGCGTGTTCATTCCTAGATCTGTGTCGATCA
TGCCTTTCTGAACACTAACATGAATCACGCTTATAACACCTTGCTCCTTC
CCTCCCTCGGGCTAGGTCGTCCTAACAATCTACCACTTCCCTTCCTTCGC
CTTCCTGGCCGCCTGTCAATTCCTGTTCACTACCCTCGTCATTTTCTGTC
TGAAAGTCGTCGGACGCGTGCAAGTCACGGCCATGTCCTGGGAGGTTTTG
CGCGTCATGGCGCCACTCGTGATCATCTCCCTCGTCAACGTCTTGTCCGG
CCTAGGTGGTACGCAAAAGATCTCCTTGCCCATGTTTACGGCCCTGCGTC
GATTTTCCATATTGATGACGATGCTGCTTGAAGCATATGTTTTTGGCACC
AGACCGTCGGTGGCCGTGAAATTAAGTGTGTTCCTCATGATTTTTGGGGC
CCTCGTGGCGGCGCTTTCCGACTTGACGTTCGACACAGTGGGGTACTTCA
TGATTTTTTTGTCGGATTTGTTTACGGCTTTGAATGGGGTGGTGATGAAG
AGGACGCTGACTGCTTGCCCTTCTGTCAACAAGATGGCAGTTCTGTACTA
TAACAGTCTGTTTGGGTAGGTGACGAAAGGAGGGAGGGGGAGGAAAGGGG
TGAGGGGGAGGACCTTGCTTCACGACGAAGCTAATTACGTAGAGACGGGT
ATTCGTCTGTCTCTTACCACATTCTTCACTTCCCGTCTTCATTTGAACAC
CTTTTCCGTCGCTCACAGCGTAATAATCATGGTGGGGTTGCTGAGCACGC
GAGAAGAAGAGATGGAGGCTGTTCGAAGCTTTACTCATTGGAATGAGCCC
CGATTTCTGCTCTCCTTCTGCCTTGCTGCCGGCATGGGCTCCATCCTCAA
CTACTCCATTTTCCTCTGCACCCTATACAATAGTGCGCTCACCACCACTG
TCGTTGGCTGTCTCAAGGTAACTAAAGCCCCTTTCTCCCTCTGATATTTT
TTTCTCATCTCACACTACATCTATGGGCGTCAAATATTCATCTACCTACA
CACCTCCCTCCCTCCTCCCTCCCTCCCTCCCCCCTGAAGAACATCTTGAC
CACGTACATTGGCATGATCTTCATGAGTGACTATATCTTCTCGTGGGAGA
ACTTCGTGGGCTTGCACATCTCCATTGTTGGTTCCTTGGTCTACTCGTTC
GTTGAGCTCCAGTCCATCCTCAAGGGCAGAGAGGTATGAAGTGAGGGAAT
GAAAGAGGATTGGGTATGCTGATAGTTTCCCTTTGGGAGAAATGGTTGAA
GAGAGGGGTAGGTGCGGGCCCTTTCCTGCTGAGGTGGTTTCGGTCCTCCA
CTACCTTTTCCTCCTTTCACGAACCCCTTGTCATTCCACTCTTCTTTTTT
CCACAGCGAGCAGTCATGGACATGAAAAGCCGTAAGCACGCGGGAGGGCG
CATTCACGTGCCCGTGGGCGGCGGCAAGGGGGCGAGCAAGCGGGAAGCAG
AGCTGGTGCGTCTGCTCGACCAGCGGCCGCCTTCGGGTGGCGGCAACACA
GGACCCGAGGAGAAAGAAGACGCTGTTTTGGTCTAACGGCGACTTTCTCT
TCTTAATGGCCCTCCCCTTTCCACCTTTTTTTCGGTTTTCCCGTTCGATG
CTTCATATTTGTCCTGCCCCGAACATCCAAATAGTATTTTAAAAACTCTG
AACCAAAGCGAATGGAAGACTAAAATCACAAAGAATCAGTGTGTTTTGGG
GCGAGAGGCCGTGAGAGAGGGAACAAGGACTGTAAGATGTTATGGAAGTG
TACATCAGTCAAAAATAAAAAAATAGAGGTAGACAACCCTAGATCCGCCT
TCGCCCCTCCGACCTCCTGGGATCCGAATTAGCAGACCCAATCAAAACGT
CCCGCCACAAAGACGAAAAGAGCAGGAGAAAAAGAATAAAAGTACCATG
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Coding sequence (CDS) from alignment at chr2:851715..854613+

>NO02G03170.2 ID=NO02G03170.2|Name=NO02G03170.2|organism=Nannochloropsis oceanica|type=CDS|length=1137bp|location=Sequence derived from alignment at chr2:851715..854613+ (Nannochloropsis oceanica)
ATGGTGAAGGCCGACCAGATCAGGCGATCGAGCCCTGCCCTAGCTGCTGG
CTTTTTGTCCTTACTTAAAACAGCTCTCACGCGTCCCCACCCAACCCAAA
AGTTACAGGTGCTAGGTGCGGTACCTGGATCGCCATCTCCTACTCCTATT
TCTGTAGCCTGTCTCCTACCTCTCCCGCCTCCCAACTCCACAAGCATTAT
GGCCCCCGTGGGCGCGACGGCATGGCAAAAGGGCGGCTCGGCGCTACTGT
ACGGGAGCGCCTCCCTCTCCATCATGGTCATCAACAAGGTCGTCCTAACA
ATCTACCACTTCCCTTCCTTCGCCTTCCTGGCCGCCTGTCAATTCCTGTT
CACTACCCTCGTCATTTTCTGTCTGAAAGTCGTCGGACGCGTGCAAGTCA
CGGCCATGTCCTGGGAGGTTTTGCGCGTCATGGCGCCACTCGTGATCATC
TCCCTCGTCAACGTCTTGTCCGGCCTAGGTGGTACGCAAAAGATCTCCTT
GCCCATGTTTACGGCCCTGCGTCGATTTTCCATATTGATGACGATGCTGC
TTGAAGCATATGTTTTTGGCACCAGACCGTCGGTGGCCGTGAAATTAAGT
GTGTTCCTCATGATTTTTGGGGCCCTCGTGGCGGCGCTTTCCGACTTGAC
GTTCGACACAGTGGGGTACTTCATGATTTTTTTGTCGGATTTGTTTACGG
CTTTGAATGGGGTGGTGATGAAGAGGACGCTGACTGCTTGCCCTTCTGTC
AACAAGATGGCAGTTCTGTACTATAACAGTCTGTTTGGCGTAATAATCAT
GGTGGGGTTGCTGAGCACGCGAGAAGAAGAGATGGAGGCTGTTCGAAGCT
TTACTCATTGGAATGAGCCCCGATTTCTGCTCTCCTTCTGCCTTGCTGCC
GGCATGGGCTCCATCCTCAACTACTCCATTTTCCTCTGCACCCTATACAA
TAGTGCGCTCACCACCACTGTCGTTGGCTGTCTCAAGAACATCTTGACCA
CGTACATTGGCATGATCTTCATGAGTGACTATATCTTCTCGTGGGAGAAC
TTCGTGGGCTTGCACATCTCCATTGTTGGTTCCTTGGTCTACTCGTTCGT
TGAGCTCCAGTCCATCCTCAAGGGCAGAGAGGTATGA
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Synonyms
Publications