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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:851715..854613 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G03170.1 vs.
Match: EWM30268.1 (udp-sugar transporter ust74c [Nannochloropsis gaditana]) HSP 1 Score: 488.0 bits (1255), Expect = 3.000e-134 Identity = 262/347 (75.50%), Postives = 299/347 (86.17%), Query Frame = 0
Query: 67 MAP-VGATAWQKGGSALLYGSASLSIMVINKVVLTIYHFPSFAFLAACQFLFTTLVIFCLKVVGRVQVTAMSWEVLRVMAPLVIISLVNVLSGLGGTQKISLPMFTALRRFSILMTMLLEAYVFGTRPSVAVKLSVFLMIFGALVAALSDLTFDTVGYFMIFLSDLFTALNGVVMKRTLTACPSVNKMAVLYYNSLFGVIIMVGLLSTREEEMEAVRSFTHWNEPRFLLSFCLAAGMGSILNYSIFLCTLYNSALTTTVVGCLKNILTTYIGMIFMSDYIFSWENFVGLHISIVGSLVYSFVELQSILKGRERAVMDMKSRKHAGGRIHVPVGGGKGASKREAELVR 413
MAP VGA+ WQKGGSAL+YG ASLSIMV+NK+VLT Y FPSFAFLAA QFLFTT++IF L VGR+QVTAMSWEV+RVMAPLV+ISLVNVL+GLGGTQK+SLPMFTALRRFSILMTMLLEAYVFGT PS AVK+SVF+MI GALVAA+SDL+FDTVGY MI LSDLFTALNGVVMK+TL++ +VNKMAVLYYNSLFGV++M L++ R+EE+ VR F HW +P F+L F LA MGS+LNYSIFLCTLYNSALTTTVVGCLKNILTTYIGM +SDYIFSWENF+G+HISI GSLVYS+VELQSIL +ER D+ SRK GRIH P +SKREAE++R
Sbjct: 1 MAPNVGASPWQKGGSALMYGMASLSIMVVNKIVLTSYQFPSFAFLAASQFLFTTMIIFILDRVGRLQVTAMSWEVVRVMAPLVVISLVNVLAGLGGTQKVSLPMFTALRRFSILMTMLLEAYVFGTSPSTAVKMSVFMMIIGALVAAMSDLSFDTVGYAMILLSDLFTALNGVVMKKTLSSSSTVNKMAVLYYNSLFGVVMMGLLMTLRDEELARVREFRHWQDPHFVLYFFLAGAMGSVLNYSIFLCTLYNSALTTTVVGCLKNILTTYIGMFLISDYIFSWENFLGIHISIAGSLVYSYVELQSILNNKERPGTDLTSRKKL-GRIHHPGKLADRSSKREAEMIR 346
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G03170.1 ID=NO02G03170.1|Name=NO02G03170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2018bp CTGCATCGGGGACATCTTTGCTGTATATGCGTAGTGAGATAGATTATCAG TTGAGAGGGGTTCTCGAGAGAGGAGTCGGTGCGGCATGAAATGGTTTTGT ACAAGGCACAAGGTAGCCCAGGAATTTTGTTCCTTCTCTCTATTCAAAAC CGCCCCCATGCCTTTGGCACGCAACAGCATAACCATGGGCGGACAGCACT CTCCTTGAATTTGCGCCAGCCGAGGGCTAAGGACTGATAAATAGACTGGT AAAGACAGATCAAAGGGGGCGCCATGGTTTTAGCTTTCGGTGGTGTGCCC ATCGAAGCACCGAAGCATCTCGGTCGCTCTCTGAGGGGCACCCCATGGTG AAGGCCGACCAGATCAGGCGATCGAGCCCTGCCCTAGCTGCTGGCTTTTT GTCCTTACTTAAAACAGCTCTCACGCGTCCCCACCCAACCCAAAAGTTAC AGGTGCTAGGTGCGGTACCTGGATCGCCATCTCCTACTCCTATTTCTGTA GCCTGTCTCCTACCTCTCCCGCCTCCCAACTCCACAAGCATTATGGCCCC CGTGGGCGCGACGGCATGGCAAAAGGGCGGCTCGGCGCTACTGTACGGGA GCGCCTCCCTCTCCATCATGGTCATCAACAAGGTCGTCCTAACAATCTAC CACTTCCCTTCCTTCGCCTTCCTGGCCGCCTGTCAATTCCTGTTCACTAC CCTCGTCATTTTCTGTCTGAAAGTCGTCGGACGCGTGCAAGTCACGGCCA TGTCCTGGGAGGTTTTGCGCGTCATGGCGCCACTCGTGATCATCTCCCTC GTCAACGTCTTGTCCGGCCTAGGTGGTACGCAAAAGATCTCCTTGCCCAT GTTTACGGCCCTGCGTCGATTTTCCATATTGATGACGATGCTGCTTGAAG CATATGTTTTTGGCACCAGACCGTCGGTGGCCGTGAAATTAAGTGTGTTC CTCATGATTTTTGGGGCCCTCGTGGCGGCGCTTTCCGACTTGACGTTCGA CACAGTGGGGTACTTCATGATTTTTTTGTCGGATTTGTTTACGGCTTTGA ATGGGGTGGTGATGAAGAGGACGCTGACTGCTTGCCCTTCTGTCAACAAG ATGGCAGTTCTGTACTATAACAGTCTGTTTGGCGTAATAATCATGGTGGG GTTGCTGAGCACGCGAGAAGAAGAGATGGAGGCTGTTCGAAGCTTTACTC ATTGGAATGAGCCCCGATTTCTGCTCTCCTTCTGCCTTGCTGCCGGCATG GGCTCCATCCTCAACTACTCCATTTTCCTCTGCACCCTATACAATAGTGC GCTCACCACCACTGTCGTTGGCTGTCTCAAGAACATCTTGACCACGTACA TTGGCATGATCTTCATGAGTGACTATATCTTCTCGTGGGAGAACTTCGTG GGCTTGCACATCTCCATTGTTGGTTCCTTGGTCTACTCGTTCGTTGAGCT CCAGTCCATCCTCAAGGGCAGAGAGCGAGCAGTCATGGACATGAAAAGCC GTAAGCACGCGGGAGGGCGCATTCACGTGCCCGTGGGCGGCGGCAAGGGG GCGAGCAAGCGGGAAGCAGAGCTGGTGCGTCTGCTCGACCAGCGGCCGCC TTCGGGTGGCGGCAACACAGGACCCGAGGAGAAAGAAGACGCTGTTTTGG TCTAACGGCGACTTTCTCTTCTTAATGGCCCTCCCCTTTCCACCTTTTTT TCGGTTTTCCCGTTCGATGCTTCATATTTGTCCTGCCCCGAACATCCAAA TAGTATTTTAAAAACTCTGAACCAAAGCGAATGGAAGACTAAAATCACAA AGAATCAGTGTGTTTTGGGGCGAGAGGCCGTGAGAGAGGGAACAAGGACT GTAAGATGTTATGGAAGTGTACATCAGTCAAAAATAAAAAAATAGAGGTA GACAACCCTAGATCCGCCTTCGCCCCTCCGACCTCCTGGGATCCGAATTA GCAGACCCAATCAAAACGTCCCGCCACAAAGACGAAAAGAGCAGGAGAAA AAGAATAAAAGTACCATG back to topprotein sequence of NO02G03170.1 >NO02G03170.1-protein ID=NO02G03170.1-protein|Name=NO02G03170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp MVKADQIRRSSPALAAGFLSLLKTALTRPHPTQKLQVLGAVPGSPSPTPI SVACLLPLPPPNSTSIMAPVGATAWQKGGSALLYGSASLSIMVINKVVLT IYHFPSFAFLAACQFLFTTLVIFCLKVVGRVQVTAMSWEVLRVMAPLVII SLVNVLSGLGGTQKISLPMFTALRRFSILMTMLLEAYVFGTRPSVAVKLS VFLMIFGALVAALSDLTFDTVGYFMIFLSDLFTALNGVVMKRTLTACPSV NKMAVLYYNSLFGVIIMVGLLSTREEEMEAVRSFTHWNEPRFLLSFCLAA GMGSILNYSIFLCTLYNSALTTTVVGCLKNILTTYIGMIFMSDYIFSWEN FVGLHISIVGSLVYSFVELQSILKGRERAVMDMKSRKHAGGRIHVPVGGG KGASKREAELVRLLDQRPPSGGGNTGPEEKEDAVLV* back to topmRNA from alignment at chr2:851715..854613+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G03170.1 ID=NO02G03170.1|Name=NO02G03170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2899bp|location=Sequence derived from alignment at chr2:851715..854613+ (Nannochloropsis oceanica) CTGCATCGGGGACATCTTTGCTGTATATGCGTAGTGAGATAGATTATCAG
TTGAGAGGGGTTCTCGAGAGAGGAGTCGGTGCGGCATGAAATGGTTTTGT
ACAAGGCACAAGGTAGCCCAGGAATTTTGTTCCTTCTCTCTATTCAAAAC
CGCCCCCATGCCTTTGGCACGCAACAGCATAACCATGGGCGGACAGCACT
CTCCTTGAATTTGCGCCAGCCGAGGGCTAAGGACTGATAAATAGACTGGT
AAAGACAGATCAAAGGGGGCGCCATGGTTTTAGCTTTCGGTGGTGTGCCC
ATCGAAGCACCGAAGCATCTCGGTCGCTCTCTGAGGGGCACCCCATGGTG
AAGGCCGACCAGATCAGGCGATCGAGCCCTGCCCTAGCTGCTGGCTTTTT
GTCCTTACTTAAAACAGCTCTCACGCGTCCCCACCCAACCCAAAAGTTAC
AGGTGCTAGGTGCGGTACCTGGATCGCCATCTCCTACTCCTATTTCTGTA
GCCTGTCTCCTACCTCTCCCGCCTCCCAACTCCACAAGCATTATGGCCCC
CGTGGGCGCGACGGCATGGCAAAAGGGCGGCTCGGCGCTACTGTACGGGA
GCGCCTCCCTCTCCATCATGGTCATCAACAAGGTATGTACGTGTCTAAGA
GCTCGGATTGACGCTGGACGGGCAGCTAGGAGTGGTTGAAACGAAAAGCA
GGATGGCGTGGGCGTCGTGTGCAAGCTCCGGAGCTTCTCGTCGAAGCACG
ACGGAGCCTGCCCAAAGCCGATGCGGCTGCTCCATACTGTTGAAACGTGC
AGAGTAGAGGTCGAAGGGGGCTTCTTCGTTTTGAGCCGGCGGACAACGGC
TTCATCGAGCGCTTACGATCCACTGGCTGCGCCCGATGGGGCATGCCGCA
TCCTCTCCTGATCTTCACAAGGCTATTTACGTATGCATTGCTTTCTGTTG
AAAAGCTTGCCATAAATCTTGCGTGTTCATTCCTAGATCTGTGTCGATCA
TGCCTTTCTGAACACTAACATGAATCACGCTTATAACACCTTGCTCCTTC
CCTCCCTCGGGCTAGGTCGTCCTAACAATCTACCACTTCCCTTCCTTCGC
CTTCCTGGCCGCCTGTCAATTCCTGTTCACTACCCTCGTCATTTTCTGTC
TGAAAGTCGTCGGACGCGTGCAAGTCACGGCCATGTCCTGGGAGGTTTTG
CGCGTCATGGCGCCACTCGTGATCATCTCCCTCGTCAACGTCTTGTCCGG
CCTAGGTGGTACGCAAAAGATCTCCTTGCCCATGTTTACGGCCCTGCGTC
GATTTTCCATATTGATGACGATGCTGCTTGAAGCATATGTTTTTGGCACC
AGACCGTCGGTGGCCGTGAAATTAAGTGTGTTCCTCATGATTTTTGGGGC
CCTCGTGGCGGCGCTTTCCGACTTGACGTTCGACACAGTGGGGTACTTCA
TGATTTTTTTGTCGGATTTGTTTACGGCTTTGAATGGGGTGGTGATGAAG
AGGACGCTGACTGCTTGCCCTTCTGTCAACAAGATGGCAGTTCTGTACTA
TAACAGTCTGTTTGGGTAGGTGACGAAAGGAGGGAGGGGGAGGAAAGGGG
TGAGGGGGAGGACCTTGCTTCACGACGAAGCTAATTACGTAGAGACGGGT
ATTCGTCTGTCTCTTACCACATTCTTCACTTCCCGTCTTCATTTGAACAC
CTTTTCCGTCGCTCACAGCGTAATAATCATGGTGGGGTTGCTGAGCACGC
GAGAAGAAGAGATGGAGGCTGTTCGAAGCTTTACTCATTGGAATGAGCCC
CGATTTCTGCTCTCCTTCTGCCTTGCTGCCGGCATGGGCTCCATCCTCAA
CTACTCCATTTTCCTCTGCACCCTATACAATAGTGCGCTCACCACCACTG
TCGTTGGCTGTCTCAAGGTAACTAAAGCCCCTTTCTCCCTCTGATATTTT
TTTCTCATCTCACACTACATCTATGGGCGTCAAATATTCATCTACCTACA
CACCTCCCTCCCTCCTCCCTCCCTCCCTCCCCCCTGAAGAACATCTTGAC
CACGTACATTGGCATGATCTTCATGAGTGACTATATCTTCTCGTGGGAGA
ACTTCGTGGGCTTGCACATCTCCATTGTTGGTTCCTTGGTCTACTCGTTC
GTTGAGCTCCAGTCCATCCTCAAGGGCAGAGAGGTATGAAGTGAGGGAAT
GAAAGAGGATTGGGTATGCTGATAGTTTCCCTTTGGGAGAAATGGTTGAA
GAGAGGGGTAGGTGCGGGCCCTTTCCTGCTGAGGTGGTTTCGGTCCTCCA
CTACCTTTTCCTCCTTTCACGAACCCCTTGTCATTCCACTCTTCTTTTTT
CCACAGCGAGCAGTCATGGACATGAAAAGCCGTAAGCACGCGGGAGGGCG
CATTCACGTGCCCGTGGGCGGCGGCAAGGGGGCGAGCAAGCGGGAAGCAG
AGCTGGTGCGTCTGCTCGACCAGCGGCCGCCTTCGGGTGGCGGCAACACA
GGACCCGAGGAGAAAGAAGACGCTGTTTTGGTCTAACGGCGACTTTCTCT
TCTTAATGGCCCTCCCCTTTCCACCTTTTTTTCGGTTTTCCCGTTCGATG
CTTCATATTTGTCCTGCCCCGAACATCCAAATAGTATTTTAAAAACTCTG
AACCAAAGCGAATGGAAGACTAAAATCACAAAGAATCAGTGTGTTTTGGG
GCGAGAGGCCGTGAGAGAGGGAACAAGGACTGTAAGATGTTATGGAAGTG
TACATCAGTCAAAAATAAAAAAATAGAGGTAGACAACCCTAGATCCGCCT
TCGCCCCTCCGACCTCCTGGGATCCGAATTAGCAGACCCAATCAAAACGT
CCCGCCACAAAGACGAAAAGAGCAGGAGAAAAAGAATAAAAGTACCATG back to topCoding sequence (CDS) from alignment at chr2:851715..854613+ >NO02G03170.1 ID=NO02G03170.1|Name=NO02G03170.1|organism=Nannochloropsis oceanica|type=CDS|length=1311bp|location=Sequence derived from alignment at chr2:851715..854613+ (Nannochloropsis oceanica) ATGGTGAAGGCCGACCAGATCAGGCGATCGAGCCCTGCCCTAGCTGCTGG CTTTTTGTCCTTACTTAAAACAGCTCTCACGCGTCCCCACCCAACCCAAA AGTTACAGGTGCTAGGTGCGGTACCTGGATCGCCATCTCCTACTCCTATT TCTGTAGCCTGTCTCCTACCTCTCCCGCCTCCCAACTCCACAAGCATTAT GGCCCCCGTGGGCGCGACGGCATGGCAAAAGGGCGGCTCGGCGCTACTGT ACGGGAGCGCCTCCCTCTCCATCATGGTCATCAACAAGGTCGTCCTAACA ATCTACCACTTCCCTTCCTTCGCCTTCCTGGCCGCCTGTCAATTCCTGTT CACTACCCTCGTCATTTTCTGTCTGAAAGTCGTCGGACGCGTGCAAGTCA CGGCCATGTCCTGGGAGGTTTTGCGCGTCATGGCGCCACTCGTGATCATC TCCCTCGTCAACGTCTTGTCCGGCCTAGGTGGTACGCAAAAGATCTCCTT GCCCATGTTTACGGCCCTGCGTCGATTTTCCATATTGATGACGATGCTGC TTGAAGCATATGTTTTTGGCACCAGACCGTCGGTGGCCGTGAAATTAAGT GTGTTCCTCATGATTTTTGGGGCCCTCGTGGCGGCGCTTTCCGACTTGAC GTTCGACACAGTGGGGTACTTCATGATTTTTTTGTCGGATTTGTTTACGG CTTTGAATGGGGTGGTGATGAAGAGGACGCTGACTGCTTGCCCTTCTGTC AACAAGATGGCAGTTCTGTACTATAACAGTCTGTTTGGCGTAATAATCAT GGTGGGGTTGCTGAGCACGCGAGAAGAAGAGATGGAGGCTGTTCGAAGCT TTACTCATTGGAATGAGCCCCGATTTCTGCTCTCCTTCTGCCTTGCTGCC GGCATGGGCTCCATCCTCAACTACTCCATTTTCCTCTGCACCCTATACAA TAGTGCGCTCACCACCACTGTCGTTGGCTGTCTCAAGAACATCTTGACCA CGTACATTGGCATGATCTTCATGAGTGACTATATCTTCTCGTGGGAGAAC TTCGTGGGCTTGCACATCTCCATTGTTGGTTCCTTGGTCTACTCGTTCGT TGAGCTCCAGTCCATCCTCAAGGGCAGAGAGCGAGCAGTCATGGACATGA AAAGCCGTAAGCACGCGGGAGGGCGCATTCACGTGCCCGTGGGCGGCGGC AAGGGGGCGAGCAAGCGGGAAGCAGAGCTGGTGCGTCTGCTCGACCAGCG GCCGCCTTCGGGTGGCGGCAACACAGGACCCGAGGAGAAAGAAGACGCTG TTTTGGTCTAA back to top
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