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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:840775..842546 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G03130.3 vs.
Match: EWM30358.1 (dolichol-phosphate mannosyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 324.3 bits (830), Expect = 2.400e-85 Identity = 162/183 (88.52%), Postives = 172/183 (93.99%), Query Frame = 0
Query: 2 LQTLYGPEIIQIRQRPGKLGLGSAYMDGLALVRGNLVVLMDADLSHHPKFIPAMYRKQLEGGFDVVTGTRYALGGGVSGWDLRRKLISRGANFLAAFLLQPGVSDLTGSFRLYRKSALAAVMARVRSRGYVFQMEVIVRARQLGFKIAEVPITFVDRIYGESKLGALEIVAYLRGLGQLFISI 185
LQ LYGP++IQI QRPGKLGLGSAY+DGLAL R + VVLMDADLSHHPKFIP ++RKQ EG FDVVTGTRYA+GGGVSGWDLRRKLISRGANFLAAFLLQPGVSDLTGSFRLYRKSALAAVM RVRS+GYVFQMEVIVRARQLG +IAEVPITFVDRIYGESKLGA EIVAYLRGLGQLF+SI
Sbjct: 75 LQELYGPQVIQIHQRPGKLGLGSAYVDGLALARADRVVLMDADLSHHPKFIPELFRKQQEGDFDVVTGTRYAMGGGVSGWDLRRKLISRGANFLAAFLLQPGVSDLTGSFRLYRKSALAAVMGRVRSKGYVFQMEVIVRARQLGLRIAEVPITFVDRIYGESKLGAGEIVAYLRGLGQLFLSI 257
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G03130.3 ID=NO02G03130.3|Name=NO02G03130.3|organism=Nannochloropsis oceanica|type=mRNA|length=1496bp CCACAGCCATCCACAGCCACCCGCAGCATAATCATGGCTTCATCATCATT CGCCAGACGAGGGAAGGGGGTGCAGCAGGTATCATCGCCGTCGCCGCCCG AGCTTTCCATCTTGCTACCTACCTACAACGAGCGGGAAAACTTGCCGCTA GTGCTGTGGCTGGTGTACAAGCACTTGACGGCAAGGTGCGTGCGGGTAAA TAATTGGCAGGAGGGCGCTGGAAAGAGGGAGGATGAGGAATATGGGCTCT GCGATGATTCAACGGAGACACAGGGCGTCTCGCCGCCTGTGGTGTGTGTC TGTACAGGGCGCACACACACAAGTCCTCGCAATCGTTGATCGGAGATAGA ACAGGATGGAGTGAGATCGGTGCATTATTATAGCTTCTCTCTTTACCTTC GGCAGTGTCAAGAGCGGATGATGCCAAACTCCCTTCCATTAAGGGGTGAT TGTGGTGGGATTGGCTTCTGCTTTGCGCATCCCCTCACGGATCTGTACTT TCTCCAACTGTGCACCAAGCCTATTTCTCCCCCTCTATCTCTTAACAACA TTTATAGTCACATTTCGTACGAGGTGATAATCATTGAGGACAACAGCCCT GACGGCACTCTGGAAGTAGCGCAGCAGTTGCAGGTAAGTAGGAGTTGATG TTGGGCAAGGAGACGGGCATCTTTGTCAGAATATAAAAGTCGGGTCAAGT TTGCCAGGAAGATGGCTATATATATGGATATGGATAAATATCTAGATGTA GATATCAGCAAACATAGATGGAGATAGATCAAGATAGACAGATAAGGACA TATGCACACATAAGAAACAGACATAGACAACACAGACTCTCGCCTCTTGT ACATTCATACACCCCCAAATGTTGCAGACATTGTACGGCCCCGAGATAAT CCAAATACGCCAGCGGCCGGGCAAGTTGGGCTTGGGCAGCGCCTATATGG ACGGGCTGGCCTTGGTGCGGGGGAATCTGGTAGTGCTGATGGACGCGGAT CTCTCCCACCATCCCAAGTTTATCCCAGCGATGTACCGAAAGCAGCTAGA AGGAGGCTTTGATGTGGTGACGGGGACACGTTACGCCTTGGGCGGAGGCG TAAGTGGGTGGGACCTAAGACGGAAGCTCATCAGCCGAGGCGCCAACTTC CTCGCTGCCTTTCTGCTGCAACCGGGCGTGTCGGATTTGACAGGCTCCTT CCGCTTGTACCGGAAATCGGCATTGGCGGCAGTCATGGCGCGCGTACGAT CGCGGGGTTATGTGTTTCAAATGGAGGTGATTGTGCGAGCCCGGCAATTG GGCTTCAAAATTGCTGAGGTGCCGATTACTTTTGTAGATCGCATCTACGG AGAGAGCAAATTGGGGGCCTTGGAAATTGTGGCGTACCTACGCGGATTAG GCCAGCTTTTTATTTCGATATAAATGAAGGGCATTAGTGAATTGGGCTCA GCGTAGAACGAAGACGGGGAAAAGACGTGTTTACATACGTAGATAG back to topprotein sequence of NO02G03130.3 >NO02G03130.3-protein ID=NO02G03130.3-protein|Name=NO02G03130.3|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp MLQTLYGPEIIQIRQRPGKLGLGSAYMDGLALVRGNLVVLMDADLSHHPK FIPAMYRKQLEGGFDVVTGTRYALGGGVSGWDLRRKLISRGANFLAAFLL QPGVSDLTGSFRLYRKSALAAVMARVRSRGYVFQMEVIVRARQLGFKIAE VPITFVDRIYGESKLGALEIVAYLRGLGQLFISI* back to topmRNA from alignment at chr2:840775..842546+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G03130.3 ID=NO02G03130.3|Name=NO02G03130.3|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp|location=Sequence derived from alignment at chr2:840775..842546+ (Nannochloropsis oceanica) CCACAGCCATCCACAGCCACCCGCAGCATAATCATGGCTTCATCATCATT
CGCCAGACGAGGGAAGGGGGTGCAGCAGGTATCATCGCCGTCGCCGCCCG
AGCTTTCCATCTTGCTACCTACCTACAACGAGCGGGAAAACTTGCCGCTA
GTGCTGTGGCTGGTGTACAAGCACTTGACGGCAAGGTGCGTGCGGGTAAA
TAATTGGCAGGAGGGCGCTGGAAAGAGGGAGGATGAGGAATATGGGCTCT
GCGATGATTCAACGGAGACACAGGGCGTCTCGCCGCCTGTGGTGTGTGTC
TGTACAGGGCGCACACACACAAGTCCTCGCAATCGTTGATCGGAGATAGA
ACAGGATGGAGTGAGATCGGTGCATTATTATAGCTTCTCTCTTTACCTTC
GGCAGTGTCAAGAGCGGATGATGCCAAACTCCCTTCCATTAAGGGGTGAT
TGTGGTGGGATTGGCTTCTGCTTTGCGCATCCCCTCACGGATCTGTACTT
TCTCCAACTGTGCACCAAGCCTATTTCTCCCCCTCTATCTCTTAACAACA
TTTATAGTCACATTTCGTACGAGGTGATAATCATTGAGGACAACAGCCCT
GACGGCACTCTGGAAGTAGCGCAGCAGTTGCAGGTAAGTAGGAGTTGATG
TTGGGCAAGGAGACGGGCATCTTTGTCAGAATATAAAAGTCGGGTCAAGT
TTGCCAGGAAGATGGCTATATATATGGATATGGATAAATATCTAGATGTA
GATATCAGCAAACATAGATGGAGATAGATCAAGATAGACAGATAAGGACA
TATGCACACATAAGAAACAGACATAGACAACACAGACTCTCGCCTCTTGT
ACATTCATACACCCCCAAATGTTGCAGACATTGTACGGCCCCGAGATAAT
CCAAATACGCCAGCGGCCGGGCAAGTTGGGCTTGGGCAGCGCCTATATGG
ACGGGCTGGCCTTGGTGCGGGGGAATCTGGTAGTGCTGATGGACGCGGAT
CTCTCCCACCATCCCAAGTTTATCCCAGCGATGTACCGGTGCGTGTTTGT
GGGTTGATTGCGATTGAACGCAAGGGTAGTCACAGAAGGGGATATTTGGT
ACGAATTAATGAAATACAAAAAAAAATCGGCGGGCAATAGTTCATCAGGA
AATACGGGCTGGAGCACGGCCTCCACATGCTGCCGCCAGGTTATACCACG
TACCTTGGGGAAGGTGGTTAGGTGTCATGAATGTGTTCATAGTATTTCAT
GCGCGATTTACTCACGTCCATCTACGGCACGCACTTCCACACATGCTGAT
CCACAATATGACAGAAAGCAGCTAGAAGGAGGCTTTGATGTGGTGACGGG
GACACGTTACGCCTTGGGCGGAGGCGTAAGTGGGTGGGACCTAAGACGGA
AGCTCATCAGCCGAGGCGCCAACTTCCTCGCTGCCTTTCTGCTGCAACCG
GGCGTGTCGGATTTGACAGGCTCCTTCCGCTTGTACCGGAAATCGGCATT
GGCGGCAGTCATGGCGCGCGTACGATCGCGGGGTTATGTGTTTCAAATGG
AGGTGATTGTGCGAGCCCGGCAATTGGGCTTCAAAATTGCTGAGGTGCCG
ATTACTTTTGTAGATCGCATCTACGGAGAGAGCAAATTGGGGGCCTTGGA
AATTGTGGCGTACCTACGCGGATTAGGCCAGCTTTTTATTTCGATATAAA
TGAAGGGCATTAGTGAATTGGGCTCAGCGTAGAACGAAGACGGGGAAAAG
ACGTGTTTACATACGTAGATAG back to topCoding sequence (CDS) from alignment at chr2:840775..842546+ >NO02G03130.3 ID=NO02G03130.3|Name=NO02G03130.3|organism=Nannochloropsis oceanica|type=CDS|length=555bp|location=Sequence derived from alignment at chr2:840775..842546+ (Nannochloropsis oceanica) ATGTTGCAGACATTGTACGGCCCCGAGATAATCCAAATACGCCAGCGGCC GGGCAAGTTGGGCTTGGGCAGCGCCTATATGGACGGGCTGGCCTTGGTGC GGGGGAATCTGGTAGTGCTGATGGACGCGGATCTCTCCCACCATCCCAAG TTTATCCCAGCGATGTACCGAAAGCAGCTAGAAGGAGGCTTTGATGTGGT GACGGGGACACGTTACGCCTTGGGCGGAGGCGTAAGTGGGTGGGACCTAA GACGGAAGCTCATCAGCCGAGGCGCCAACTTCCTCGCTGCCTTTCTGCTG CAACCGGGCGTGTCGGATTTGACAGGCTCCTTCCGCTTGTACCGGAAATC GGCATTGGCGGCAGTCATGGCGCGCGTACGATCGCGGGGTTATGTGTTTC AAATGGAGGTGATTGTGCGAGCCCGGCAATTGGGCTTCAAAATTGCTGAG GTGCCGATTACTTTTGTAGATCGCATCTACGGAGAGAGCAAATTGGGGGC CTTGGAAATTGTGGCGTACCTACGCGGATTAGGCCAGCTTTTTATTTCGA TATAA back to top
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